Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

1130329 .. 1132013

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGCCGAAGAAGGAGAGGACGGCTCAGGTGAGCAGGAACCCGAATCTGATAAGAGGGATCGGGAAGTATTCTCGGTCGAAGATGTATCACAAGAGAGGGCTTTGGGCTATCAAGGCCAAGAACGGCGGCTCTTTCCCTCGCCACGATAAGAAACCCGCCGCCGATGTCCCCGCCGTCAAGCCCCCCAAGTTCTACCCTGCCGACGATGTCAAGAAGCCTCTTATCAATAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCAAGCATTACCCCTGGAACTGTGCTGATCATTCTGGCCGGAAGGTTCAAGGGCAAGAGGGTTGTCTTCTTGAAGCAGCTTTCCTCTGGCTTGCTTTTGGTCACTGGGCCATTCAAGATTAACGGTGTTCCTCTTAGACGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACATCTCCGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTTCCAAGGAGGTTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAATTCTTCGAAGCAGAGAAGGAGGAGAAAAATGTACTCCCACAGGACAAGAAAGATGACCAGAAAATTGTCGATACTCCATTGATTAAAGCCATCGAAGGAGTTACAGACTTGAAGACTTACTTGGCTGCAAGGTTTTCTCTCAAGCAAGGAATGAAGCCACATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

10.17

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 62	4.1e-17	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	127 - 234	2.1e-39	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	4 cut(s)	129, 159, 162, 174
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	482, 561
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	6 cut(s)	310, 334, 376, 432, 500, 640
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	3 cut(s)	256, 340, 694
AluI	AGCT	3 cut(s)	256, 340, 694
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	3 cut(s)	117, 297, 368
ApeKI	GCWGC	2 cut(s)	337, 653
ApoI	RAATTY	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	43, 415
AsuII	TTCGAA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	319, 647
BbvI	GCAGC	2 cut(s)	349, 640
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	3 cut(s)	39, 142, 161
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	288
BfaI	CTAG	1 cut(s)	703
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	130, 162, 338, 654
BlsI	GCNGC	4 cut(s)	131, 163, 339, 655
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	6, 41
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
BpiI	GAAGAC	2 cut(s)	319, 647
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu10I	CCTNAGC	2 cut(s)	27, 257
Bpu14I	TTCGAA	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	274, 435, 489
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	274, 435, 489
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	41, 271
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	349, 640
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	119, 299, 370
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	300, 450
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	119, 299, 370
Bsp119I	TTCGAA	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	60, 288
BspACI	CCGC	4 cut(s)	129, 159, 162, 174
BspANI	GGCC	3 cut(s)	119, 299, 370
BspCNI	CTCAG	2 cut(s)	40, 270
BspLI	GGNNCC	2 cut(s)	6, 41
BspPI	GGATC	1 cut(s)	68
BspT104I	TTCGAA	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	274, 435, 489
BssMI	GATC	2 cut(s)	60, 288
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	435, 489
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	283, 386
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	265, 353
BstDEI	CTNAG	3 cut(s)	27, 257, 395
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	63, 291
BstMBI	GATC	2 cut(s)	60, 288
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 253, 691
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	349, 640
BstV2I	GAAGAC	2 cut(s)	319, 647
BsuRI	GGCC	3 cut(s)	119, 299, 370
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	265, 353
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	481, 560
CviAII	CATG	1 cut(s)	689
CviQI	GTAC	2 cut(s)	481, 560
DdeI	CTNAG	3 cut(s)	27, 257, 395
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	62, 290
DpnII	GATC	2 cut(s)	60, 288
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	435, 489
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	435, 489
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	435, 489
FaeI	CATG	1 cut(s)	692
FaiI	YATR	2 cut(s)	417, 690
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	688
FauI	CCCGC	2 cut(s)	166, 181
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	130, 162, 338, 654
Fsp4HI	GCNGC	4 cut(s)	130, 162, 338, 654
FspBI	CTAG	1 cut(s)	703
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	130, 162, 338, 654
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	119, 299, 370
HapII	CCGG	2 cut(s)	300, 450
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	692
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	442, 457
HindII	GTYRAC	2 cut(s)	442, 457
HinfI	GANTC	1 cut(s)	46
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	300, 450
HphI	GGTGA	2 cut(s)	43, 415
Hpy166II	GTNNAC	3 cut(s)	406, 442, 457
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	4 cut(s)	64, 214, 331, 376
Hpy8I	GTNNAC	3 cut(s)	406, 442, 457
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	6 cut(s)	7, 297, 508, 515, 538, 617
HpyCH4III	ACNGT	2 cut(s)	283, 386
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 253, 691
HpyF3I	CTNAG	3 cut(s)	27, 257, 395
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	692
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	60, 288
Lsp1109I	GCAGC	2 cut(s)	349, 640
MaeI	CTAG	1 cut(s)	703
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	361, 628
MalI	GATC	2 cut(s)	62, 290
MboI	GATC	2 cut(s)	60, 288
MboII	GAAGA	6 cut(s)	22, 94, 319, 517, 523, 652
MluCI	AATT	2 cut(s)	527, 591
Mly113I	GGCGCC	1 cut(s)	5
MseI	TTAA	3 cut(s)	381, 456, 612
MspI	CCGG	2 cut(s)	300, 450
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	116, 253, 691
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	60, 288
NlaIII	CATG	1 cut(s)	692
NlaIV	GGNNCC	2 cut(s)	6, 41
NmuCI	GTSAC	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	46
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	131, 163, 339, 655
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	6, 41
PspPI	GGNCC	1 cut(s)	368
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	482, 561
RsaNI	GTAC	2 cut(s)	481, 560
SaqAI	TTAA	3 cut(s)	381, 456, 612
SatI	GCNGC	4 cut(s)	130, 162, 338, 654
Sau3AI	GATC	2 cut(s)	60, 288
Sau96I	GGNCC	1 cut(s)	368
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	9 cut(s)	33, 258, 308, 342, 441, 462, 498, 662, 696
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	2 cut(s)	527, 591
SsiI	CCGC	4 cut(s)	129, 159, 162, 174
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	703
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	435, 489
TaaI	ACNGT	2 cut(s)	283, 386
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	4 cut(s)	80, 534, 597, 621
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	527, 591
TatI	WGTACW	2 cut(s)	480, 559
TauI	GCSGC	2 cut(s)	132, 164
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	381, 456, 612
Tru9I	TTAA	3 cut(s)	381, 456, 612
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	337, 653
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	527
XspI	CTAG	1 cut(s)	703
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.