Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

27849217 .. 27851437

Gene Structure 2221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCGGCGAAACAGAGGACAGCTAAGGTCAACAGGAATCCTGATCTGATCAGGGGAGTTGGTAAATACTCAAGGTCTCAGATGTACCATAAGAGAGGTTTGTGGGCAATCAAGGCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGAGAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCACGGCAAAACCAGCCAAGCTCAGAGCTAGCATCACTCCAGGGACAGTGCTTATCATCCTTGCTGGTAGATTTAAGGGCAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCCGGTTTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTCTGAGACGTGTTAACCAGGCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTTACCCTCGACAAATTCGATGATAAGTACTTCGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACTGAAGGAGAGTTCTTCGAGGCTGAGAAAGAGGAGAAGAAAGAGATTCCACAGGGAAAGAAAGATGACCAGAAAGCCGTGGACGCAGCTTTGATCAAAGCTATTGAAGCAGTTCCAGAGTTGAAGACTTACCTCGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

233

Amino Acids

26.01

Weight (kDa)

10.18

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	5.2e-19	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	2.1e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	222, 537
AfaI	GTAC	3 cut(s)	86, 424, 479
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	373, 620, 637, 667
AjiI	CACGTC	2 cut(s)	208, 398
AjnI	CCWGG	2 cut(s)	271, 405
AluBI	AGCT	8 cut(s)	23, 200, 253, 260, 337, 602, 614, 691
AluI	AGCT	8 cut(s)	23, 200, 253, 260, 337, 602, 614, 691
Alw26I	GTCTC	2 cut(s)	81, 388
AoxI	GGCC	2 cut(s)	114, 408
ApeKI	GCWGC	2 cut(s)	334, 599
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	365
BbsI	GAAGAC	4 cut(s)	210, 316, 518, 644
BbvI	GCAGC	2 cut(s)	346, 611
BceAI	ACGGC	2 cut(s)	252, 575
BciT130I	CCWGG	2 cut(s)	273, 407
BclI	TGATCA	2 cut(s)	48, 606
BcoDI	GTCTC	2 cut(s)	81, 388
BfaI	CTAG	2 cut(s)	261, 700
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	335, 600
BlsI	GCNGC	2 cut(s)	336, 601
BmcAI	AGTACT	1 cut(s)	479
Bme1390I	CCNGG	2 cut(s)	273, 407
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	2 cut(s)	208, 398
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	2 cut(s)	273, 407
BmsI	GCATC	2 cut(s)	154, 273
BmtI	GCTAGC	1 cut(s)	264
BpiI	GAAGAC	4 cut(s)	210, 316, 518, 644
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	2 cut(s)	255, 468
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	272, 591, 646
BsaWI	WCCGGW	2 cut(s)	169, 344
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	273, 407
BseDI	CCNNGG	3 cut(s)	272, 591, 646
BseGI	GGATG	1 cut(s)	288
BseMII	CTCAG	5 cut(s)	92, 268, 383, 486, 528
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	346, 611
BshFI	GGCC	2 cut(s)	116, 410
BsiSI	CCGG	3 cut(s)	5, 170, 345
BslFI	GGGAC	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	81, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	116, 410
Bso31I	GGTCTC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	43, 48, 375, 606
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	116, 410
BspCNI	CTCAG	5 cut(s)	91, 267, 384, 487, 529
BspOI	GCTAGC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	272, 591, 646
BssMI	GATC	4 cut(s)	43, 48, 375, 606
Bst2UI	CCWGG	2 cut(s)	273, 407
Bst4CI	ACNGT	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	6, 262, 339
BstDEI	CTNAG	7 cut(s)	24, 78, 156, 254, 392, 495, 537
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	46, 51, 378, 609
BstMAI	GTCTC	2 cut(s)	81, 388
BstMBI	GATC	4 cut(s)	43, 48, 375, 606
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 245, 596, 620, 688
BstNI	CCWGG	2 cut(s)	273, 407
BstSCI	CCNGG	2 cut(s)	271, 405
BstV1I	GCAGC	2 cut(s)	346, 611
BstV2I	GAAGAC	4 cut(s)	210, 316, 518, 644
BsuRI	GGCC	2 cut(s)	116, 410
BtgI	CCRYGG	1 cut(s)	591
BtrI	CACGTC	2 cut(s)	208, 398
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	6, 262, 339
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	2 cut(s)	155, 605
Csp6I	GTAC	3 cut(s)	85, 423, 478
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	3 cut(s)	85, 423, 478
DdeI	CTNAG	7 cut(s)	24, 78, 156, 254, 392, 495, 537
DpnI	GATC	4 cut(s)	45, 50, 377, 608
DpnII	GATC	4 cut(s)	43, 48, 375, 606
Eco147I	AGGCCT	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	222, 537
EcoRII	CCWGG	2 cut(s)	271, 405
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	1 cut(s)	689
FaiI	YATR	3 cut(s)	90, 414, 687
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	685
FauI	CCCGC	1 cut(s)	146
FbaI	TGATCA	2 cut(s)	48, 606
Fnu4HI	GCNGC	2 cut(s)	335, 600
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	335, 600
FspBI	CTAG	2 cut(s)	261, 700
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	335, 600
GsuI	CTGGAG	2 cut(s)	255, 468
HaeIII	GGCC	2 cut(s)	116, 410
HapII	CCGG	3 cut(s)	5, 170, 345
HgaI	GACGC	2 cut(s)	155, 605
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	689
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	3 cut(s)	31, 403, 439
HindII	GTYRAC	3 cut(s)	31, 403, 439
HinfI	GANTC	2 cut(s)	37, 559
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	3 cut(s)	5, 170, 345
Hpy166II	GTNNAC	4 cut(s)	31, 403, 439, 595
Hpy188I	TCNGA	5 cut(s)	48, 81, 257, 393, 650
Hpy188III	TCNNGA	4 cut(s)	41, 373, 447, 629
Hpy8I	GTNNAC	4 cut(s)	31, 403, 439, 595
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	207, 397
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 245, 596, 620, 688
HpyF3I	CTNAG	7 cut(s)	24, 78, 156, 254, 392, 495, 537
HpySE526I	ACGT	2 cut(s)	207, 397
Hsp92II	CATG	1 cut(s)	689
HspAI	GCGC	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	2 cut(s)	48, 606
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	43, 48, 375, 606
LmnI	GCTCC	2 cut(s)	172, 650
Lsp1109I	GCAGC	2 cut(s)	346, 611
LweI	GCATC	2 cut(s)	154, 273
MaeI	CTAG	2 cut(s)	261, 700
MaeII	ACGT	2 cut(s)	207, 397
MaeIII	GTNAC	2 cut(s)	358, 451
MalI	GATC	4 cut(s)	45, 50, 377, 608
MboI	GATC	4 cut(s)	43, 48, 375, 606
MboII	GAAGA	9 cut(s)	215, 223, 316, 511, 520, 520, 523, 562, 649
MluCI	AATT	1 cut(s)	464
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	3 cut(s)	306, 330, 402
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	3 cut(s)	5, 170, 345
MspR9I	CCNGG	2 cut(s)	273, 407
MvaI	CCWGG	2 cut(s)	273, 407
MwoI	GCNNNNNNNGC	5 cut(s)	113, 245, 596, 620, 688
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	4 cut(s)	43, 48, 375, 606
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	37, 559
PkrI	GCNGC	2 cut(s)	336, 601
Psp6I	CCWGG	2 cut(s)	271, 405
PspGI	CCWGG	2 cut(s)	271, 405
PspPI	GGNCC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	86, 424, 479
RsaNI	GTAC	3 cut(s)	85, 423, 478
SaqAI	TTAA	3 cut(s)	306, 330, 402
SatI	GCNGC	2 cut(s)	335, 600
Sau3AI	GATC	4 cut(s)	43, 48, 375, 606
Sau96I	GGNCC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	273, 407
SfaNI	GCATC	2 cut(s)	154, 273
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	70, 329
SmoI	CTYRAG	2 cut(s)	70, 329
Sse9I	AATT	1 cut(s)	464
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	261, 700
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	271, 405
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	210, 400
TaqI	TCGA	3 cut(s)	459, 468, 531
TasI	AATT	1 cut(s)	464
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	37, 559
Tru1I	TTAA	3 cut(s)	306, 330, 402
Tru9I	TTAA	3 cut(s)	306, 330, 402
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	334, 599
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	651, 692
TspRI	CASTG	1 cut(s)	285
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	261, 700
ZrmI	AGTACT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.