Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

46471537 .. 46473283

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG361200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGCAAAAGCGAGAGTTGCCAGAAAGACCCGAAACCCAGATCTGATCCGCGGTGTGGGTAAGTACTCGAGGTCCAAGATGTACCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGCGTCTTCCCACGCCACGACGCCAAGCCGGCAGCTGAGGCTCCATCGGTGAAGCCCCCAAAGTTCTACCCTGCCGAAGATGTCAAGAAGCCCCTCGTCAACAAGCACAAGCCTAAGCCTACCAAGCTCAGGGGGAGTATTACACCCGGGACAGTGTTGATTATATTGGCTGGAAGATTTAAGGGAAAGAGAGTTGTTTTCCTTAAGCAACTTCCATCTGGCTTGCTTCTTGTTACTGGGCCGTTTAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTATGTGATCGGCACTTCCACCAAGGTCAACATTTCTGGGGTTAATGTGGATAAGTTTGATGACAAGTATTTCGCAAAGGCATTGGAAAAGAAGAAGAAGAAGGGTGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAACAAGCTCCCAGAAGAAAGGAAAGATGATCAGAAGAGTGTGGATGCTTCTTTGATAAAGTCTATTGAGGCTGTCCCAGACTTGAAGACATACTTGGCTGCCAGATTCTCTCTTAGGTCTGGCATGAAGCCTCATGAGCTCGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

233

Amino Acids

26.02

Weight (kDa)

10.26

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	4 - 61	1.1e-15	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	7e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	52, 54, 126
AclWI	GGATC	1 cut(s)	43
AcyI	GRCGYC	2 cut(s)	129, 147
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	2 cut(s)	58, 255
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	637
AjiI	CACGTC	1 cut(s)	398
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	4 cut(s)	161, 253, 559, 691
AluI	AGCT	4 cut(s)	161, 253, 559, 691
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	43
Ama87I	CYCGRG	2 cut(s)	70, 272
AoxI	GGCC	3 cut(s)	105, 114, 365
ApeKI	GCWGC	3 cut(s)	5, 158, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	75, 105, 365
AsuC2I	CCSGG	2 cut(s)	273, 274
AsuHPI	GGTGA	2 cut(s)	187, 527
AvaI	CYCGRG	2 cut(s)	70, 272
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	2 cut(s)	124, 644
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	17, 170, 637
BccI	CCATC	3 cut(s)	116, 178, 349
BceAI	ACGGC	2 cut(s)	139, 352
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	273, 274
BcoDI	GTCTC	1 cut(s)	388
BfrI	CTTAAG	1 cut(s)	329
BglI	GCCNNNNNGGC	2 cut(s)	113, 155
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	4 cut(s)	6, 127, 159, 651
BlsI	GCNGC	4 cut(s)	7, 128, 160, 652
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	273, 274
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	2 cut(s)	70, 272
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	75, 105, 365
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	273, 274
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	124, 644
Bpu10I	CCTNAGC	3 cut(s)	162, 240, 254
BpuMI	CCSGG	2 cut(s)	273, 274
BsaHI	GRCGYC	2 cut(s)	129, 147
BsaJI	CCNNGG	3 cut(s)	52, 272, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 255
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	52, 272, 432
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	58, 255
BseMII	CTCAG	2 cut(s)	153, 268
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	17, 170, 637
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	107, 116, 367
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	70, 272
BsiSI	CCGG	2 cut(s)	155, 273
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	2 cut(s)	58, 255
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	3 cut(s)	107, 116, 367
BsoBI	CYCGRG	2 cut(s)	70, 272
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	43, 48, 417, 580
BspACI	CCGC	3 cut(s)	52, 54, 126
BspANI	GGCC	3 cut(s)	107, 116, 367
BspCNI	CTCAG	2 cut(s)	154, 267
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	52, 272, 432
BssMI	GATC	4 cut(s)	43, 48, 417, 580
BssNI	GRCGYC	2 cut(s)	129, 147
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	2 cut(s)	129, 147
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	156, 350
BstDEI	CTNAG	4 cut(s)	162, 240, 254, 665
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	46, 51, 420, 583
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	43, 48, 417, 580
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 20, 113, 155, 164, 250, 688
BstSCI	CCNGG	2 cut(s)	271, 272
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	17, 170, 637
BstV2I	GAAGAC	2 cut(s)	124, 644
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	107, 116, 367
BtgI	CCRYGG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	156, 350
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	75, 105, 365
Cfr42I	CCGCGG	1 cut(s)	55
Cfr9I	CCCGGG	1 cut(s)	272
CseI	GACGC	2 cut(s)	118, 155
Csp6I	GTAC	2 cut(s)	67, 85
CviAII	CATG	2 cut(s)	676, 686
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	4 cut(s)	162, 240, 254, 665
DpnI	GATC	4 cut(s)	45, 50, 419, 582
DpnII	GATC	4 cut(s)	43, 48, 417, 580
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	691
Eco88I	CYCGRG	2 cut(s)	70, 272
EcoICRI	GAGCTC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	679, 689
FaiI	YATR	5 cut(s)	290, 414, 643, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	2 cut(s)	675, 685
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	4 cut(s)	6, 127, 159, 651
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	4 cut(s)	6, 127, 159, 651
GluI	GCNGC	4 cut(s)	6, 127, 159, 651
HaeIII	GGCC	3 cut(s)	107, 116, 367
HapII	CCGG	2 cut(s)	155, 273
HgaI	GACGC	2 cut(s)	118, 155
Hin1I	GRCGYC	2 cut(s)	129, 147
Hin1II	CATG	2 cut(s)	679, 689
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HinfI	GANTC	2 cut(s)	403, 657
HpaII	CCGG	2 cut(s)	155, 273
HphI	GGTGA	2 cut(s)	187, 527
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188I	TCNGA	2 cut(s)	48, 585
Hpy188III	TCNNGA	2 cut(s)	211, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 20, 113, 155, 164, 250, 688
HpyF3I	CTNAG	4 cut(s)	162, 240, 254, 665
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	2 cut(s)	129, 147
Hsp92II	CATG	2 cut(s)	679, 689
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	580
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	43, 48, 417, 580
LmnI	GCTCC	2 cut(s)	172, 564
Lsp1109I	GCAGC	3 cut(s)	17, 170, 637
LweI	GCATC	1 cut(s)	586
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	45, 50, 419, 582
MboI	GATC	4 cut(s)	43, 48, 417, 580
MboII	GAAGA	9 cut(s)	124, 215, 312, 514, 517, 520, 578, 598, 649
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	693
MnlI	CCTC	9 cut(s)	66, 89, 157, 230, 511, 526, 538, 613, 693
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	5 cut(s)	306, 330, 372, 378, 453
MspA1I	CMGCKG	2 cut(s)	54, 161
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	155, 273
MspR9I	CCNGG	2 cut(s)	273, 274
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	7 cut(s)	11, 20, 113, 155, 164, 250, 688
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	2 cut(s)	273, 274
NdeII	GATC	4 cut(s)	43, 48, 417, 580
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	679, 689
NlaIV	GGNNCC	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	403, 657
PkrI	GCNGC	4 cut(s)	7, 128, 160, 652
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	3 cut(s)	75, 105, 365
PspXI	VCTCGAGB	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SacI	GAGCTC	1 cut(s)	693
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	5 cut(s)	306, 330, 372, 378, 453
SatI	GCNGC	4 cut(s)	6, 127, 159, 651
Sau3AI	GATC	4 cut(s)	43, 48, 417, 580
Sau96I	GGNCC	3 cut(s)	75, 105, 365
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	273, 274
SduI	GDGCHC	1 cut(s)	693
SetI	ASST	9 cut(s)	77, 100, 163, 255, 400, 438, 561, 671, 693
SfaNI	GCATC	1 cut(s)	586
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	70
SmaI	CCCGGG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	70, 329
SmoI	CTYRAG	2 cut(s)	70, 329
SsiI	CCGC	3 cut(s)	52, 54, 126
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	271, 272
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	71
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	403, 657
Tru1I	TTAA	5 cut(s)	306, 330, 372, 378, 453
Tru9I	TTAA	5 cut(s)	306, 330, 372, 378, 453
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	3 cut(s)	5, 158, 650
TspDTI	ATGAA	1 cut(s)	692
TspMI	CCCGGG	1 cut(s)	272
TspRI	CASTG	1 cut(s)	285
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.