Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

549299 .. 551810

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1005300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGCCTAAGCAGAGGACTCCAAAGGTCACCAGAAACCCGGATCTCATCCGAGGGATTGGGAAATACTCGAGGTCCAAGATGTACCACAAACGAGGCCTTTGGGCTATCAAGGCCAAGAACGGCGGCGTTTTTCCCTGCCACGACAAGAAGCCCGCCGCCGACACCCCGGCTGTCAAACCCCCCAAGTTTTACGCCGCCGACGATGTCAAGAAGCCTCTTGTGAACAAGCGCAAGCCCAAGCCCACAAAGCTCAGGGCCAGCATTACACCTGGTACTGTGTTGATTCTTCTTGCCGGGAGGTTCAAGGGGAAGAGGGTTGTGTTTCTGAAGCAGCTTTCTTCTGGCTTGCTTTTGGTCACTGGACCATTCAAGATTAACGGAGTTCCTCTAAGACGTGTGAACCAATCTTACGTTATTGGAACTTCAACTAAGATTGACATCTGCGGGGTTAATGTTGATAAGTTTGATGACAAGTATTTTGCAAAGGAAGTCCGGGCGAAAAAGAAGAAGGGAGAAGGCGAATTCTTTGAAGCAGAGAAGGAGGATAAAAATGTACTGCCCCAGGAGAAAAAAGAAGACCAGAAGGCTGTTGATACACCCTTAATTAACTCCATAGAGAAAATTGCAGATTTGAAGACTTATTTGGCCGCGAGGTTTTCTCTCAAGCAAGGCATGAAGCCTCATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

26.14

Weight (kDa)

10.12

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	1.1e-15	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	4.1e-39	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	653
AciI	CCGC	6 cut(s)	126, 156, 159, 198, 447, 651
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	86, 277, 558
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	5 cut(s)	307, 373, 429, 533, 637
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	271, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
AlwI	GGATC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	4 cut(s)	97, 114, 258, 648
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	2 cut(s)	7, 234
AspS9I	GGNCC	3 cut(s)	75, 258, 365
AsuC2I	CCSGG	4 cut(s)	41, 170, 298, 497
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	75, 365
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	585, 644
BbvI	GCAGC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	273, 566
BcnI	CCSGG	4 cut(s)	41, 170, 298, 497
BfaI	CTAG	1 cut(s)	700
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	5 cut(s)	127, 159, 198, 335, 651
BlsI	GCNGC	5 cut(s)	128, 160, 199, 336, 652
Bme1390I	CCNGG	6 cut(s)	41, 170, 273, 298, 497, 566
Bme18I	GGWCC	2 cut(s)	75, 365
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	75, 258, 365
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	6 cut(s)	41, 170, 273, 298, 497, 566
BpiI	GAAGAC	2 cut(s)	585, 644
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
Bpu10I	CCTNAGC	2 cut(s)	9, 254
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	4 cut(s)	41, 170, 298, 497
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	52, 168, 564
Bse1I	ACTGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	273, 566
BseDI	CCNNGG	3 cut(s)	52, 168, 564
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	653
BshFI	GGCC	4 cut(s)	99, 116, 260, 650
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	4 cut(s)	41, 170, 297, 496
BsnI	GGCC	4 cut(s)	99, 116, 260, 650
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	6 cut(s)	126, 156, 159, 198, 447, 651
BspANI	GGCC	4 cut(s)	99, 116, 260, 650
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	653
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	52, 168, 564
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	273, 566
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	156, 236, 262, 350
BstDEI	CTNAG	4 cut(s)	9, 254, 392, 432
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	653
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 234
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 250, 688
BstNI	CCWGG	2 cut(s)	273, 566
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	6 cut(s)	39, 168, 271, 296, 495, 564
BstUI	CGCG	1 cut(s)	653
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	2 cut(s)	585, 644
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	99, 116, 260, 650
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	4 cut(s)	156, 236, 262, 350
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	7, 234
Cfr13I	GGNCC	3 cut(s)	75, 258, 365
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	85, 276, 557
CviAII	CATG	2 cut(s)	676, 686
CviQI	GTAC	3 cut(s)	85, 276, 557
DdeI	CTNAG	4 cut(s)	9, 254, 392, 432
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco147I	AGGCCT	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	75, 365
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	271, 564
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	2 cut(s)	679, 689
FaiI	YATR	3 cut(s)	617, 677, 687
FatI	CATG	2 cut(s)	675, 685
FauI	CCCGC	2 cut(s)	163, 440
Fnu4HI	GCNGC	5 cut(s)	127, 159, 198, 335, 651
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	127, 159, 198, 335, 651
FspBI	CTAG	1 cut(s)	700
GlaI	GCGC	2 cut(s)	6, 233
GluI	GCNGC	5 cut(s)	127, 159, 198, 335, 651
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	99, 116, 260, 650
HapII	CCGG	4 cut(s)	41, 170, 297, 496
HhaI	GCGC	2 cut(s)	7, 234
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	679, 689
Hin6I	GCGC	2 cut(s)	5, 232
HinP1I	GCGC	2 cut(s)	5, 232
HinfI	GANTC	2 cut(s)	19, 286
HpaII	CCGG	4 cut(s)	41, 170, 297, 496
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	226, 403
Hpy188I	TCNGA	2 cut(s)	53, 330
Hpy188III	TCNNGA	3 cut(s)	211, 373, 686
Hpy8I	GTNNAC	2 cut(s)	226, 403
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	4 cut(s)	505, 512, 535, 580
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	397, 414
HpyCH4V	TGCA	2 cut(s)	485, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 250, 688
HpyF3I	CTNAG	4 cut(s)	9, 254, 392, 432
HpySE526I	ACGT	2 cut(s)	397, 414
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	679, 689
HspAI	GCGC	2 cut(s)	5, 232
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	43
Lsp1109I	GCAGC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	1 cut(s)	700
MaeII	ACGT	2 cut(s)	397, 414
MaeIII	GTNAC	2 cut(s)	28, 358
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	6 cut(s)	281, 325, 333, 520, 590, 649
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	3 cut(s)	524, 606, 624
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	4 cut(s)	378, 453, 605, 609
MspI	CCGG	4 cut(s)	41, 170, 297, 496
MspR9I	CCNGG	6 cut(s)	41, 170, 273, 298, 497, 566
MvaI	CCWGG	2 cut(s)	273, 566
MvnI	CGCG	1 cut(s)	653
MwoI	GCNNNNNNNGC	3 cut(s)	113, 250, 688
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	4 cut(s)	41, 170, 298, 497
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	679, 689
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	28, 358
PacI	TTAATTAA	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	286
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	128, 160, 199, 336, 652
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	271, 564
PspEI	GGTNACC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	271, 564
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	75, 258, 365
PspXI	VCTCGAGB	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	86, 277, 558
RsaNI	GTAC	3 cut(s)	85, 276, 557
SaqAI	TTAA	4 cut(s)	378, 453, 605, 609
SatI	GCNGC	5 cut(s)	127, 159, 198, 335, 651
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	3 cut(s)	75, 258, 365
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	6 cut(s)	41, 170, 273, 298, 497, 566
SexAI	ACCWGGT	1 cut(s)	271
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	75, 365
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	70, 665
SmoI	CTYRAG	2 cut(s)	70, 665
Sse9I	AATT	3 cut(s)	524, 606, 624
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	6 cut(s)	126, 156, 159, 198, 447, 651
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	700
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	6 cut(s)	39, 168, 271, 296, 495, 564
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	400, 417
TaqI	TCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	524, 606, 624
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	4 cut(s)	129, 161, 200, 653
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	4 cut(s)	378, 453, 605, 609
Tru9I	TTAA	4 cut(s)	378, 453, 605, 609
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	28, 358
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	2 cut(s)	28, 358
TspDTI	ATGAA	1 cut(s)	692
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	75, 365
XapI	RAATTY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.