AT1G18720

Protein of unknown function (DUF962)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002194
Physical Location & Seq
Reverse (-)
6457775 .. 6460405
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18720.1

Sequence Viewer

Length: 621 bp
ATGAGTCGCATAATGGGATTGTTCGATCTCGAGAAACACTTCGCCTTCTACGGTGCTTACCATAGCAATCCGATCAACATTCTAATCCACATCATCTTCGTTTGGCCAATCTTCTTCTCAGTTTTACTTCTCCTCCACTCGTCGACCCCAATTTTCGACCCCTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTTTGCGATTTAACGTTGGGTTTATATTCGCCTTGATTTATGCTCTGTTCTATATCGGTTTGGATAAGAAATCTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTTGCTGTTCGACTAGGATCTTCTCTTGCCTTAAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGACCGGGCAGTTCGTTGGCCATGGAGTATTCGAGAAACGGGCACCTGCGCTGTTAGACAATTTACTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAATCGGTTTTCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACATCAAGGAATATAGGGCAAAGAAGCAGAAGAAGAATAAGATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

206

Amino Acids

23.13

Weight (kDa)

9.28

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 9 - 170 3.4e-25 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 547
AclI AACGTT 1 cut(s) 216
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 2 cut(s) 104, 409
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 2 cut(s) 506, 542
AluBI AGCT 3 cut(s) 287, 382, 464
AluI AGCT 3 cut(s) 287, 382, 464
AlwI GGATC 1 cut(s) 352
Ama87I CYCGRG 2 cut(s) 29, 494
AoxI GGCC 2 cut(s) 104, 409
ApeKI GCWGC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 442, 547
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 2 cut(s) 397, 534
AvaI CYCGRG 2 cut(s) 29, 494
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 436
BalI TGGCCA 2 cut(s) 106, 411
BanI GGYRCC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 214
BcnI CCSGG 2 cut(s) 397, 534
BfaI CTAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 397, 534
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 2 cut(s) 29, 494
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 3 cut(s) 319, 435, 477
BmrFI CCNGG 2 cut(s) 397, 534
BmsI GCATC 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 397, 534
BsaJI CCNNGG 2 cut(s) 412, 558
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 412, 558
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 2 cut(s) 132, 392
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 547
BshFI GGCC 2 cut(s) 106, 411
BshNI GGYRCC 1 cut(s) 433
BsiHKCI CYCGRG 2 cut(s) 29, 494
BsiSI CCGG 2 cut(s) 396, 534
BslI CCNNNNNNNGG 1 cut(s) 533
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 2 cut(s) 106, 411
BsoBI CYCGRG 2 cut(s) 29, 494
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 4 cut(s) 25, 72, 344, 612
Bsp19I CCATGG 1 cut(s) 412
BspANI GGCC 2 cut(s) 106, 411
BspCNI CTCAG 2 cut(s) 131, 391
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 319, 435, 477
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 433
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 412, 558
BssMI GATC 4 cut(s) 25, 72, 344, 612
BssT1I CCWWGG 2 cut(s) 412, 558
Bst4CI ACNGT 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 118, 378
BstDSI CCRYGG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 547
BstHHI GCGC 2 cut(s) 442, 547
BstKTI GATC 4 cut(s) 28, 75, 347, 615
BstMBI GATC 4 cut(s) 25, 72, 344, 612
BstSCI CCNGG 2 cut(s) 395, 532
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 2 cut(s) 106, 411
BtgI CCRYGG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 445
CfoI GCGC 2 cut(s) 442, 547
Cfr13I GGNCC 1 cut(s) 393
CviAII CATG 2 cut(s) 413, 472
CviJI RGCY 6 cut(s) 106, 287, 382, 411, 464, 476
CviKI_1 RGCY 6 cut(s) 106, 287, 382, 411, 464, 476
DdeI CTNAG 2 cut(s) 118, 378
DpnI GATC 4 cut(s) 27, 74, 346, 614
DpnII GATC 4 cut(s) 25, 72, 344, 612
EaeI YGGCCR 2 cut(s) 104, 409
Eco130I CCWWGG 2 cut(s) 412, 558
Eco47I GGWCC 1 cut(s) 393
Eco88I CYCGRG 2 cut(s) 29, 494
EcoT14I CCWWGG 2 cut(s) 412, 558
ErhI CCWWGG 2 cut(s) 412, 558
FaeI CATG 2 cut(s) 416, 475
FatI CATG 2 cut(s) 412, 471
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 341
GlaI GCGC 2 cut(s) 441, 546
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 2 cut(s) 106, 411
HapII CCGG 2 cut(s) 396, 534
HhaI GCGC 2 cut(s) 442, 547
Hin1II CATG 2 cut(s) 416, 475
Hin6I GCGC 2 cut(s) 440, 545
HinP1I GCGC 2 cut(s) 440, 545
HincII GTYRAC 2 cut(s) 144, 189
HindII GTYRAC 2 cut(s) 144, 189
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 396, 534
Hpy166II GTNNAC 2 cut(s) 144, 189
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 4 cut(s) 29, 31, 276, 424
Hpy8I GTNNAC 2 cut(s) 144, 189
Hpy99I CGWCG 2 cut(s) 145, 200
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 118, 378
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 2 cut(s) 416, 475
HspAI GCGC 2 cut(s) 440, 545
Kzo9I GATC 4 cut(s) 25, 72, 344, 612
LmnI GCTCC 1 cut(s) 481
LpnPI CCDG 6 cut(s) 261, 295, 334, 409, 450, 547
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 383
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 569
MalI GATC 4 cut(s) 27, 74, 346, 614
MboI GATC 4 cut(s) 25, 72, 344, 612
MboII GAAGA 8 cut(s) 88, 103, 106, 339, 475, 494, 613, 616
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 436
MlsI TGGCCA 2 cut(s) 106, 411
MluCI AATT 3 cut(s) 150, 167, 451
MluNI TGGCCA 2 cut(s) 106, 411
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 4 cut(s) 143, 172, 203, 490
Mox20I TGGCCA 2 cut(s) 106, 411
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 2 cut(s) 106, 411
MseI TTAA 2 cut(s) 213, 359
Msp20I TGGCCA 2 cut(s) 106, 411
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 2 cut(s) 396, 534
MspR9I CCNGG 2 cut(s) 397, 534
Mva1269I GAATGC 1 cut(s) 559
MvnI CGCG 1 cut(s) 547
NciI CCSGG 2 cut(s) 397, 534
NcoI CCATGG 1 cut(s) 412
NdeII GATC 4 cut(s) 25, 72, 344, 612
NlaIII CATG 2 cut(s) 416, 475
NlaIV GGNNCC 3 cut(s) 319, 435, 477
NmuCI GTSAC 1 cut(s) 569
PaeR7I CTCGAG 2 cut(s) 29, 494
PaqCI CACCTGC 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 319, 435, 477
PspPI GGNCC 1 cut(s) 393
PspXI VCTCGAGB 1 cut(s) 494
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 382
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 213, 359
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 4 cut(s) 25, 72, 344, 612
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 397, 534
SduI GDGCHC 1 cut(s) 436
SetI ASST 8 cut(s) 219, 289, 366, 384, 439, 466, 501, 564
SfaNI GCATC 1 cut(s) 383
Sfr274I CTCGAG 2 cut(s) 29, 494
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 2 cut(s) 29, 494
SmlI CTYRAG 2 cut(s) 29, 494
SmoI CTYRAG 2 cut(s) 29, 494
Sse9I AATT 3 cut(s) 150, 167, 451
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 395, 532
StyI CCWWGG 2 cut(s) 412, 558
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 219
TaqI TCGA 8 cut(s) 24, 30, 143, 156, 195, 337, 423, 495
TasI AATT 3 cut(s) 150, 167, 451
Tru1I TTAA 2 cut(s) 213, 359
Tru9I TTAA 2 cut(s) 213, 359
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 393
XhoI CTCGAG 2 cut(s) 29, 494
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.