Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002194

Physical Location & Seq

Genomic Coordinates Reverse (-)

4049032 .. 4050076

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGGAAGACCGGCCTGTTCGATCTCGAAAAGCACTTTGCTTTCTACGGAGCTTACCACAGCAACCCAGTCAACATAGCGATTCACATGCTCTTCGTCTGGCCAATACTTTTCACCTTTCTGCTCATCTTCTACTTCACGCCCTCGCTGCTGGGTTTTGCGGTTTCGGTGTTTGGGAACGACGTCGTTATTCCTTTCAACATCGGCTTGCTGTTGACTATAATCTATTCGGTGTTCTACATCTGTTTGGACGCAAAAGCTGGCTCCTTGGGTGCTCTGCTCTGTGTAATTTGCTGGGTTGCTAGCTGTTTCCTTGGAACCCTACTCGGATTTTCCATCTCTTGGAAGGTTTTTCTGGTGACTCAGATTGTGTGTTGGACTGGACAATTTATTGGCCATGGGGCCTTTGAGAAAAGGGCACCAGCTTTGTTGGACAATCTAGCACAGGCCTTTATAATGGCTCCCTTCTTTGTTCTGTTGGAGGCTCTGCAAATGTTCTTCGGCTACGAGCCCTACCCCGGGTTTCAAGCAATTGTTCAGGCAAAGATTGATGCTGAAATCAGTGAATGGCAAGAGAAGAAGAAGAAACTGATATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF962

Protein Analysis

200

Amino Acids

22.31

Weight (kDa)

6.39

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18720 AT1G18720 AT1G74440 AT1G74440
fragaria_vesca	FvH4_4g31090 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680
malus_domestica	MD05G1207900.v1.1 MD06G1195800.v1.1 MD13G1069400.v1.1 MD14G1202900.v1.1 MD16G1069800.v1.1
prunus_persica	Prupe.1G277300_v2.0.a1 Prupe.4G149600_v2.0.a1 Prupe.5G195600_v2.0.a1
pyrus_communis	pycom05g19380 pycom13g06230 pycom14g16770 pycom14g16790 pycom16g06080
rosa_chinensis	RchiOBHm_Chr4g0439471 RchiOBHm_Chr7g0181721
rosa_laevigata	RLG00000005174 RLG00000006268
rosa_multiflora	Rmu_sc0000988.1_g000009 Rmu_sc0007276.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271780 Rroxscaffold_5G00380370
rosa_rugosa	Rorug04G0318500 Rorug06G0442900 Rorug06G0442900
rosa_samantha	Rh4BG381800 Rh4CG396400 Rh4DG376400 Rh7AG045500 Rh7CG046200 Rh7DG045100
rosa_wichuraiana	Rw4G031520 Rw7G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	342
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	101, 394
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	3 cut(s)	342, 518, 519
AgsI	TTSAA	2 cut(s)	199, 527
AluBI	AGCT	4 cut(s)	53, 260, 306, 425
AluI	AGCT	4 cut(s)	53, 260, 306, 425
Alw21I	GWGCWC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	5 cut(s)	13, 101, 394, 402, 447
ApeKI	GCWGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	402
AsuC2I	CCSGG	2 cut(s)	519, 520
AsuHPI	GGTGA	2 cut(s)	106, 370
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	2 cut(s)	103, 396
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcnI	CCSGG	2 cut(s)	519, 520
BfaI	CTAG	2 cut(s)	303, 440
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	519, 520
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	5 cut(s)	265, 319, 403, 420, 462
BmrFI	CCNGG	2 cut(s)	519, 520
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	541
BmtI	GCTAGC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	519, 520
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	267, 313, 397, 517, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 518, 519
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	68, 385
BseDI	CCNNGG	5 cut(s)	267, 313, 397, 517, 518
BseLI	CCNNNNNNNGG	3 cut(s)	342, 518, 519
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	2 cut(s)	68, 385
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	2 cut(s)	151, 294
BshFI	GGCC	5 cut(s)	15, 103, 396, 404, 449
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	12, 519
BslI	CCNNNNNNNGG	3 cut(s)	342, 518, 519
BsnI	GGCC	5 cut(s)	15, 103, 396, 404, 449
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	3 cut(s)	277, 421, 513
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	5 cut(s)	15, 103, 396, 404, 449
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	5 cut(s)	265, 319, 403, 420, 462
BspOI	GCTAGC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	68, 385
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	5 cut(s)	267, 313, 397, 517, 518
BssMI	GATC	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	267, 313, 397
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	209, 262, 304
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	397
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	517, 518
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	5 cut(s)	15, 103, 396, 404, 449
BtgI	CCRYGG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	3 cut(s)	209, 262, 304
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	402
Cfr9I	CCCGGG	1 cut(s)	518
CseI	GACGC	1 cut(s)	260
CviAII	CATG	2 cut(s)	88, 398
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	2 cut(s)	101, 394
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	3 cut(s)	267, 313, 397
Eco147I	AGGCCT	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	3 cut(s)	267, 313, 397
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	3 cut(s)	267, 313, 397
FaeI	CATG	2 cut(s)	91, 401
FaiI	YATR	5 cut(s)	77, 89, 221, 399, 455
FatI	CATG	2 cut(s)	87, 397
Fnu4HI	GCNGC	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	2 cut(s)	303, 440
GluI	GCNGC	1 cut(s)	149
GsaI	CCCAGC	2 cut(s)	155, 298
HaeIII	GGCC	5 cut(s)	15, 103, 396, 404, 449
HapII	CCGG	2 cut(s)	12, 519
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	91, 401
HincII	GTYRAC	2 cut(s)	73, 216
HindII	GTYRAC	2 cut(s)	73, 216
HinfI	GANTC	2 cut(s)	82, 361
HpaII	CCGG	2 cut(s)	12, 519
HphI	GGTGA	2 cut(s)	106, 370
Hpy166II	GTNNAC	2 cut(s)	73, 216
Hpy188I	TCNGA	2 cut(s)	329, 366
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	73, 216
Hpy99I	CGWCG	2 cut(s)	185, 188
HpyAV	CCTTC	2 cut(s)	340, 475
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	91, 401
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	50, 269, 466
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	303, 440
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	7 cut(s)	19, 85, 121, 490, 589, 592, 595
MfeI	CAATTG	1 cut(s)	531
MhlI	GDGCHC	3 cut(s)	277, 421, 513
MlsI	TGGCCA	2 cut(s)	103, 396
MluCI	AATT	3 cut(s)	288, 386, 531
MluNI	TGGCCA	2 cut(s)	103, 396
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	3 cut(s)	356, 411, 459
MnlI	CCTC	2 cut(s)	154, 475
Mox20I	TGGCCA	2 cut(s)	103, 396
MscI	TGGCCA	2 cut(s)	103, 396
Msp20I	TGGCCA	2 cut(s)	103, 396
MspI	CCGG	2 cut(s)	12, 519
MspR9I	CCNGG	2 cut(s)	519, 520
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	519, 520
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	1 cut(s)	22
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	91, 401
NlaIV	GGNNCC	5 cut(s)	265, 319, 403, 420, 462
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	82
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	455
PspFI	CCCAGC	2 cut(s)	151, 294
PspN4I	GGNNCC	5 cut(s)	265, 319, 403, 420, 462
PspPI	GGNCC	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	519, 520
SduI	GDGCHC	3 cut(s)	277, 421, 513
SetI	ASST	7 cut(s)	55, 119, 186, 262, 308, 351, 427
SfaNI	GCATC	1 cut(s)	541
SmaI	CCCGGG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	288, 386, 531
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	303, 440
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	517, 518
StyI	CCWWGG	3 cut(s)	267, 313, 397
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	21, 27
TasI	AATT	3 cut(s)	288, 386, 531
TfiI	GAWTC	1 cut(s)	82
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	63
TspMI	CCCGGG	1 cut(s)	518
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	342
XceI	RCATGY	1 cut(s)	91
XmaI	CCCGGG	1 cut(s)	518
XspI	CTAG	2 cut(s)	303, 440
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.