Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002194

Physical Location & Seq

Genomic Coordinates Forward (+)

8531056 .. 8531691

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G149600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGAGGACTGGATTGTTTGATCTTGAAAGGCACTTTGCCTTTTATGGAGCATATCACAGCAACCCAGTTAACATTTTGATACACACTTTCTTTGTGTGGCCATTATTCTTCACTGCTGCCGTTCTTCTCCATTTCACACCTTCTCTCTACAATTTCCCATCTGGGATTAGTGAACATGGTCTTGAATTGAATTTTGGGTTTGTTTTTACTTTGATGTATGCTGTTTTTTATGTTTGCTTGGATAAGAAAGCAGGGCCCCTGGCAGCTTTGCTCTGCTTTCTCTGTTGGGTTGGAGCCAGTTTTCTTGCTGGTGGACTTGGGTTTTCCAGGTCATGGAAGCTTGTTCTGGCTGCTCAGTTGTTTTGCTGGACTGGACAGTTCATAGGCCATGGGATATTTGAGAAAAGAGCACCGGCTATTTCAGACAACTTTGTTCAAGCACTTCTAATGGGGCCTTACTTTGTGCTGCTTGAGCTTCTTCAATCAGCCTTTGGCTATGAACCTTATCCAGGTTTCCATGCAAGTGTGCAAAAACAGATTGAAGCTGATATCAAAGAGTGGAAGGCCAAGAACCAAAAGAAACTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF962

Protein Analysis

198

Amino Acids

22.21

Weight (kDa)

8.33

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18720 AT1G18720 AT1G74440 AT1G74440
fragaria_vesca	FvH4_4g31090 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680
malus_domestica	MD05G1207900.v1.1 MD06G1195800.v1.1 MD13G1069400.v1.1 MD14G1202900.v1.1 MD16G1069800.v1.1
prunus_persica	Prupe.1G277300_v2.0.a1 Prupe.4G149600_v2.0.a1 Prupe.5G195600_v2.0.a1
pyrus_communis	pycom05g19380 pycom13g06230 pycom14g16770 pycom14g16790 pycom16g06080
rosa_chinensis	RchiOBHm_Chr4g0439471 RchiOBHm_Chr7g0181721
rosa_laevigata	RLG00000005174 RLG00000006268
rosa_multiflora	Rmu_sc0000988.1_g000009 Rmu_sc0007276.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271780 Rroxscaffold_5G00380370
rosa_rugosa	Rorug04G0318500 Rorug06G0442900 Rorug06G0442900
rosa_samantha	Rh4BG381800 Rh4CG396400 Rh4DG376400 Rh7AG045500 Rh7CG046200 Rh7DG045100
rosa_wichuraiana	Rw4G031520 Rw7G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	336, 512
AgsI	TTSAA	6 cut(s)	29, 188, 193, 440, 485, 545
AjnI	CCWGG	3 cut(s)	261, 329, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	4 cut(s)	269, 343, 478, 548
AluI	AGCT	4 cut(s)	269, 343, 478, 548
Alw21I	GWGCWC	1 cut(s)	415
AoxI	GGCC	5 cut(s)	101, 257, 388, 455, 567
ApaI	GGGCCC	1 cut(s)	261
ApeKI	GCWGC	4 cut(s)	119, 266, 353, 469
ApoI	RAATTY	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	257, 258, 455
BaeGI	GKGCMC	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	4 cut(s)	106, 278, 340, 456
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	3 cut(s)	263, 331, 513
BisI	GCNGC	4 cut(s)	120, 267, 354, 470
BlsI	GCNGC	4 cut(s)	121, 268, 355, 471
Bme1390I	CCNGG	3 cut(s)	263, 331, 513
BmgT120I	GGNCC	3 cut(s)	257, 258, 455
BmiI	GGNNCC	4 cut(s)	259, 260, 298, 456
BmrFI	CCNGG	3 cut(s)	263, 331, 513
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	261, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 512
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	4 cut(s)	16, 68, 300, 379
BseBI	CCWGG	3 cut(s)	263, 331, 513
BseDI	CCNNGG	2 cut(s)	261, 391
BseLI	CCNNNNNNNGG	2 cut(s)	336, 512
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	4 cut(s)	16, 68, 300, 379
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	4 cut(s)	106, 278, 340, 456
BshFI	GGCC	5 cut(s)	103, 259, 390, 457, 569
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	336, 512
BsnI	GGCC	5 cut(s)	103, 259, 390, 457, 569
Bsp120I	GGGCCC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	261, 415
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	391
BspANI	GGCC	5 cut(s)	103, 259, 390, 457, 569
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	4 cut(s)	259, 260, 298, 456
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	4 cut(s)	16, 68, 300, 379
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	261, 391
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	3 cut(s)	263, 331, 513
Bst4CI	ACNGT	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	391
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	3 cut(s)	263, 331, 513
BstSCI	CCNGG	3 cut(s)	261, 329, 511
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	4 cut(s)	106, 278, 340, 456
BsuRI	GGCC	5 cut(s)	103, 259, 390, 457, 569
BtgI	CCRYGG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	257, 258, 455
CviAII	CATG	5 cut(s)	179, 336, 392, 521, 591
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	553
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	3 cut(s)	257, 258, 455
EcoRII	CCWGG	3 cut(s)	261, 329, 511
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	5 cut(s)	182, 339, 395, 524, 594
FatI	CATG	5 cut(s)	178, 335, 391, 520, 590
Fnu4HI	GCNGC	4 cut(s)	120, 267, 354, 470
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	120, 267, 354, 470
GluI	GCNGC	4 cut(s)	120, 267, 354, 470
HaeIII	GGCC	5 cut(s)	103, 259, 390, 457, 569
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	5 cut(s)	182, 339, 395, 524, 594
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	341
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	73, 176, 317
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	26, 185
Hpy8I	GTNNAC	3 cut(s)	73, 176, 317
HpyAV	CCTTC	2 cut(s)	153, 559
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	524, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	182, 339, 395, 524, 594
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	50, 296
Lsp1109I	GCAGC	4 cut(s)	106, 278, 340, 456
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	103, 119, 473
MhlI	GDGCHC	2 cut(s)	261, 415
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	3 cut(s)	154, 188, 193
MluNI	TGGCCA	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	274
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	103
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	3 cut(s)	263, 331, 513
MvaI	CCWGG	3 cut(s)	263, 331, 513
MwoI	GCNNNNNNNGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	182, 339, 395, 524, 594
NlaIV	GGNNCC	4 cut(s)	259, 260, 298, 456
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	121, 268, 355, 471
Psp6I	CCWGG	3 cut(s)	261, 329, 511
PspGI	CCWGG	3 cut(s)	261, 329, 511
PspN4I	GGNNCC	4 cut(s)	259, 260, 298, 456
PspOMI	GGGCCC	1 cut(s)	257
PspPI	GGNCC	3 cut(s)	257, 258, 455
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	4 cut(s)	120, 267, 354, 470
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	3 cut(s)	257, 258, 455
ScrFI	CCNGG	3 cut(s)	263, 331, 513
SduI	GDGCHC	2 cut(s)	261, 415
SetI	ASST	8 cut(s)	145, 271, 335, 345, 480, 508, 517, 550
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	154, 188, 193
StyD4I	CCNGG	3 cut(s)	261, 329, 511
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	381
TasI	AATT	3 cut(s)	154, 188, 193
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	4 cut(s)	119, 266, 353, 469
TspDTI	ATGAA	2 cut(s)	373, 516
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	336
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.