Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002194

Physical Location & Seq

Genomic Coordinates Forward (+)

18944401 .. 18945922

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGGAGGAATGGATTGTTCGATCTGGAAAGTCACTTCGCTTTCTATGGCGCTTACCACAGCAACCGAGTTAATATTTTGATCCACACACTGTTTGTGTGGCCGATTTTCTTCACCTCTCTGGTTCTCTTCTACTTCACACCTTCTCTCTACAATTTCCCGAGTGGTTTCTGTTTGAATTTAGGGTTTGCTTTCACTGTGATCTATGCTGGGTTTTATGTGTGCTTGGATAAGAAAGCTGGGTCTGTTGCTGCTCTGCTCTGTGTTCTCTGCTGGGTTCAGTCGACCCTGCTTGCTAGCCGTTTTGGGTTTTCTCTGTCATGGAAGGTTGTGTTGGCTGCTCAGTTGTTCTGTTGGACTGGACAGTTCATAGGCCACGGGGTGTTCGAGAAACGAGCACCAGCTCTTTTGGACAACCTTGTTCAAGCATTTCTAATGGCTCCTTTCTTTGTGCTGCTTGAGTGTCTTCAATCGGTATTCGGCTATGAACCATATCAAGGGTTTCATGCAAGTGTGGAAGAAAAGATAGAAGCTCAGATCAAGGAGTGGAGGGACAAGAAACAAAAGAAAATCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF962

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

8.51

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18720 AT1G18720 AT1G74440 AT1G74440
fragaria_vesca	FvH4_4g31090 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680
malus_domestica	MD05G1207900.v1.1 MD06G1195800.v1.1 MD13G1069400.v1.1 MD14G1202900.v1.1 MD16G1069800.v1.1
prunus_persica	Prupe.1G277300_v2.0.a1 Prupe.4G149600_v2.0.a1 Prupe.5G195600_v2.0.a1
pyrus_communis	pycom05g19380 pycom13g06230 pycom14g16770 pycom14g16790 pycom16g06080
rosa_chinensis	RchiOBHm_Chr4g0439471 RchiOBHm_Chr7g0181721
rosa_laevigata	RLG00000005174 RLG00000006268
rosa_multiflora	Rmu_sc0000988.1_g000009 Rmu_sc0007276.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271780 Rroxscaffold_5G00380370
rosa_rugosa	Rorug04G0318500 Rorug06G0442900 Rorug06G0442900
rosa_samantha	Rh4BG381800 Rh4CG396400 Rh4DG376400 Rh7AG045500 Rh7CG046200 Rh7DG045100
rosa_wichuraiana	Rw4G031520 Rw7G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	178, 425, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	3 cut(s)	239, 404, 533
AluI	AGCT	3 cut(s)	239, 404, 533
Alw21I	GWGCWC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	101, 373
ApeKI	GCWGC	3 cut(s)	251, 338, 454
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	238, 325, 441
BceAI	ACGGC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	3 cut(s)	252, 339, 455
BlsI	GCNGC	3 cut(s)	253, 340, 456
BmeT110I	CYCGRG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	441
BmtI	GCTAGC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	356, 548
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	238, 325, 441
BseYI	CCCAGC	3 cut(s)	209, 239, 273
BshFI	GGCC	2 cut(s)	103, 375
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	103, 375
BsoBI	CYCGRG	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	22, 81, 201, 537
BspANI	GGCC	2 cut(s)	103, 375
BspCNI	CTCAG	2 cut(s)	355, 547
BspLI	GGNNCC	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	4 cut(s)	22, 81, 201, 537
Bst4CI	ACNGT	3 cut(s)	93, 199, 366
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	294, 298
BstDEI	CTNAG	3 cut(s)	342, 534, 576
BstDSI	CCRYGG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	4 cut(s)	25, 84, 204, 540
BstMBI	GATC	4 cut(s)	22, 81, 201, 537
BstV1I	GCAGC	3 cut(s)	238, 325, 441
BstV2I	GAAGAC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	103, 375
BtgI	CCRYGG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	89, 195
Cac8I	GCNNGC	2 cut(s)	294, 298
CfoI	GCGC	1 cut(s)	53
CviAII	CATG	2 cut(s)	321, 506
CviJI	RGCY	9 cut(s)	103, 239, 300, 338, 375, 404, 440, 483, 533
CviKI_1	RGCY	9 cut(s)	103, 239, 300, 338, 375, 404, 440, 483, 533
DdeI	CTNAG	3 cut(s)	342, 534, 576
DpnI	GATC	4 cut(s)	24, 83, 203, 539
DpnII	GATC	4 cut(s)	22, 81, 201, 537
DraIII	CACNNNGTG	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	160
FaeI	CATG	2 cut(s)	324, 509
FaiI	YATR	8 cut(s)	48, 207, 219, 322, 371, 486, 493, 507
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	320, 505
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	3 cut(s)	252, 339, 455
Fsp4HI	GCNGC	3 cut(s)	252, 339, 455
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	252, 339, 455
GsaI	CCCAGC	3 cut(s)	213, 243, 277
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	103, 375
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	324, 509
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	3 cut(s)	26, 160, 388
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	153, 319
HpyCH4III	ACNGT	3 cut(s)	93, 199, 366
HpyCH4V	TGCA	1 cut(s)	509
HpyF3I	CTNAG	3 cut(s)	342, 534, 576
Hsp92II	CATG	2 cut(s)	324, 509
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	22, 81, 201, 537
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	8 cut(s)	11, 107, 195, 225, 259, 302, 345, 414
Lsp1109I	GCAGC	3 cut(s)	238, 325, 441
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	4 cut(s)	24, 83, 203, 539
MboI	GATC	4 cut(s)	22, 81, 201, 537
MboII	GAAGA	4 cut(s)	103, 121, 458, 530
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	154, 178
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	2 cut(s)	127, 543
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	510
NdeII	GATC	4 cut(s)	22, 81, 201, 537
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	2 cut(s)	324, 509
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	253, 340, 456
PspFI	CCCAGC	3 cut(s)	209, 239, 273
PspN4I	GGNNCC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	252, 339, 455
Sau3AI	GATC	4 cut(s)	22, 81, 201, 537
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	7 cut(s)	119, 145, 241, 330, 406, 420, 535
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	154, 178
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	93, 199, 366
TaqI	TCGA	3 cut(s)	21, 284, 387
TasI	AATT	2 cut(s)	154, 178
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	96, 202
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	3 cut(s)	251, 338, 454
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	358, 494, 501
TspRI	CASTG	2 cut(s)	96, 202
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.