Rh7CG046200

Endoplasmic reticulum membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002194
Physical Location & Seq
Forward (+)
3097252 .. 3100843
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG046200.1

Sequence Viewer

Length: 486 bp
ATGGGGGGAAGAGGATTGTTTGATCTTGAAAACCACTTTGCCTTCTATGGCGCATATCACAGCAACCCAGTTAACATTTTCATCCACACTCTGTTTGTGTGGCCAATTCTCTTCACCTCTCTTGTTCTTCTCTACTTCACACCTTCCCTGCTGAATTTCCCAGCTGGGGTTTATCATGGGTTTTTGTTTAATTTTGGGTTTGTTTTCACTGTGATCTATGCTTTGTATTATGTTGGATTGGATAAGAAAGCTGGGTCCTTGGCTGCTTTGCTCTGTGTTCTCTGCTGGGTTGGAGCCAGTGTTCTTGCTAGTCGCCTTGGGTTTTCTTTGGCATGGAAGGTTGTGTTGGCAGCTCAGTTGTTCTGTTGGACTGGACAGTTCATAGGCCATGGGGTGTTTGAGAAACGAGCACCAGCTCTTCTGGACAACCTTGTCCAAGCATTTCTAATGGCCCCTTTCTTTGTGTTACTTGAGGTAATTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

7.77

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 8 - 159 1.6e-23 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 4 cut(s) 164, 251, 353, 416
AluI AGCT 4 cut(s) 164, 251, 353, 416
Alw21I GWGCWC 1 cut(s) 412
AoxI GGCC 3 cut(s) 101, 385, 450
ApeKI GCWGC 2 cut(s) 263, 350
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 255, 451
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 250, 362
BfaI CTAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 264, 351
BlsI GCNGC 2 cut(s) 265, 352
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 255, 451
BmiI GGNNCC 3 cut(s) 256, 295, 453
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 258, 316, 388
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 68, 297, 376
BseDI CCNNGG 3 cut(s) 258, 316, 388
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 3 cut(s) 68, 297, 376
BseXI GCAGC 2 cut(s) 250, 362
BseYI CCCAGC 4 cut(s) 160, 164, 251, 285
BshFI GGCC 3 cut(s) 103, 387, 452
BsiHKAI GWGCWC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 3 cut(s) 103, 387, 452
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 22, 213
Bsp19I CCATGG 1 cut(s) 388
BspANI GGCC 3 cut(s) 103, 387, 452
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 256, 295, 453
BspQI GCTCTTC 1 cut(s) 423
BsrI ACTGG 3 cut(s) 68, 297, 376
BssECI CCNNGG 3 cut(s) 258, 316, 388
BssMI GATC 2 cut(s) 22, 213
BssT1I CCWWGG 3 cut(s) 258, 316, 388
Bst4CI ACNGT 2 cut(s) 211, 378
Bst6I CTCTTC 3 cut(s) 4, 116, 423
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 25, 216
BstMBI GATC 2 cut(s) 22, 213
BstV1I GCAGC 2 cut(s) 250, 362
BsuRI GGCC 3 cut(s) 103, 387, 452
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 207, 304
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 255, 451
CviAII CATG 3 cut(s) 176, 333, 389
CviJI RGCY 9 cut(s) 103, 164, 251, 263, 296, 353, 387, 416, 452
CviKI_1 RGCY 9 cut(s) 103, 164, 251, 263, 296, 353, 387, 416, 452
DdeI CTNAG 1 cut(s) 354
DpnI GATC 2 cut(s) 24, 215
DpnII GATC 2 cut(s) 22, 213
DrdI GACNNNNNNGTC 1 cut(s) 431
DseDI GACNNNNNNGTC 1 cut(s) 431
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 3 cut(s) 4, 116, 423
EarI CTCTTC 3 cut(s) 4, 116, 423
Eco130I CCWWGG 3 cut(s) 258, 316, 388
Eco47I GGWCC 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 255
EcoT14I CCWWGG 3 cut(s) 258, 316, 388
ErhI CCWWGG 3 cut(s) 258, 316, 388
FaeI CATG 3 cut(s) 179, 336, 392
FaiI YATR 8 cut(s) 48, 55, 177, 219, 231, 334, 383, 390
FatI CATG 3 cut(s) 175, 332, 388
Fnu4HI GCNGC 2 cut(s) 264, 351
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 264, 351
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 264, 351
GsaI CCCAGC 4 cut(s) 164, 168, 255, 289
HaeIII GGCC 3 cut(s) 103, 387, 452
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 179, 336, 392
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaI GTTAAC 1 cut(s) 73
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 26, 422
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 52, 153, 331
HpyCH4III ACNGT 2 cut(s) 211, 378
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 3 cut(s) 179, 336, 392
HspAI GCGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 22, 213
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 2 cut(s) 250, 362
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 465
MalI GATC 2 cut(s) 24, 215
MboI GATC 2 cut(s) 22, 213
MboII GAAGA 4 cut(s) 21, 103, 119, 410
MhlI GDGCHC 1 cut(s) 412
MlsI TGGCCA 1 cut(s) 103
MluCI AATT 4 cut(s) 105, 154, 190, 477
MluNI TGGCCA 1 cut(s) 103
MmeI TCCRAC 3 cut(s) 214, 271, 347
MnlI CCTC 3 cut(s) 5, 127, 466
Mox20I TGGCCA 1 cut(s) 103
MscI TGGCCA 1 cut(s) 103
MseI TTAA 3 cut(s) 72, 189, 484
Msp20I TGGCCA 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 164
NcoI CCATGG 1 cut(s) 388
NdeII GATC 2 cut(s) 22, 213
NlaIII CATG 3 cut(s) 179, 336, 392
NlaIV GGNNCC 3 cut(s) 256, 295, 453
PciSI GCTCTTC 1 cut(s) 423
PkrI GCNGC 2 cut(s) 265, 352
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
PspFI CCCAGC 4 cut(s) 160, 164, 251, 285
PspN4I GGNNCC 3 cut(s) 256, 295, 453
PspPI GGNCC 2 cut(s) 255, 451
PspPPI RGGWCCY 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 3 cut(s) 72, 189, 484
SatI GCNGC 2 cut(s) 264, 351
Sau3AI GATC 2 cut(s) 22, 213
Sau96I GGNCC 2 cut(s) 255, 451
SduI GDGCHC 1 cut(s) 412
SetI ASST 9 cut(s) 119, 145, 166, 253, 342, 355, 418, 432, 477
SinI GGWCC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 4 cut(s) 105, 154, 190, 477
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 3 cut(s) 258, 316, 388
TaaI ACNGT 2 cut(s) 211, 378
TasI AATT 4 cut(s) 105, 154, 190, 477
Tru1I TTAA 3 cut(s) 72, 189, 484
Tru9I TTAA 3 cut(s) 72, 189, 484
TscAI CASTG 2 cut(s) 214, 304
TseI GCWGC 2 cut(s) 263, 350
TspDTI ATGAA 2 cut(s) 70, 370
TspRI CASTG 2 cut(s) 214, 304
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 154
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.