RLG00000006268

Endoplasmic reticulum membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002194
Physical Location & Seq
Forward (+)
5739602 .. 5740601
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006268

Sequence Viewer

Length: 603 bp
ATGGTGGGGAAGACTGGATTGTTCGACCTTGAGAAGCACTTCGCTTTCTATGGAGCTTATCACAGCAATCCGATCAACATAGCGATACATATGATCTTCGTCTGGCCCATCTTCTTCACAGCTCTGTTACTCCTCTATTTCACGCCATCCATATTCAACGTGGAGTTTTCACTGTTTGGGAGCCAAGTCTTTCTGGCTTTCAACGTCGGCTTCTTGTTGACTTTGATCTATTCGGTGTTTTACTTCTTTCTGGATCATAAAGCTGGTTCCTTGGCTGCTCTGCTTTGTTTTATTTGCTGGGTTGGCAGTAGTTTCCTTGCGAGTCGACTCGGGTTTTCGCTCTCTTGGAAGGTTGTTCTGGTGGCTCAGATAGTGTGTTGGACTGGACAGTTTCTTGGCCATGGGGCCTTTGAGAGACGGGCACCGGCTCTATTGGACAACCTTGCACAAGCATTTATAATGGCTCCTTTCTTTGTTTTGTTAGAGGCTCTGCAAAGCTTCTTTGGCTATGAACCATACCCAGGGTTTCATGCAATAGTTCAGGCAAAAGTTGATGCTGAAATTACTGAATGGAAAGAAACGAAGCAGAGATTGGTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

201

Amino Acids

22.66

Weight (kDa)

6.57

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 9 - 165 4.1e-22 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 325
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 2 cut(s) 157, 202
AjnI CCWGG 1 cut(s) 520
AjuI GAANNNNNNNTTGG 1 cut(s) 575
AluBI AGCT 4 cut(s) 56, 122, 263, 498
AluI AGCT 4 cut(s) 56, 122, 263, 498
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 3 cut(s) 104, 397, 405
ApeKI GCWGC 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 105, 405
AvaI CYCGRG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 262
BccI CCATC 2 cut(s) 116, 154
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 409
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 105, 405
BmiI GGNNCC 5 cut(s) 182, 268, 406, 423, 465
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 4 cut(s) 270, 400, 520, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 19, 388
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 4 cut(s) 270, 400, 520, 521
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 19, 388
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 297
BshFI GGCC 3 cut(s) 106, 399, 407
BshNI GGYRCC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 409
BsmBI CGTCTC 1 cut(s) 409
BsnI GGCC 3 cut(s) 106, 399, 407
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 4 cut(s) 72, 93, 225, 253
Bsp19I CCATGG 1 cut(s) 400
BspANI GGCC 3 cut(s) 106, 399, 407
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 5 cut(s) 182, 268, 406, 423, 465
BspPI GGATC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 2 cut(s) 19, 388
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 270, 400, 520, 521
BssMI GATC 4 cut(s) 72, 93, 225, 253
BssT1I CCWWGG 2 cut(s) 270, 400
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 2 cut(s) 174, 390
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 4 cut(s) 75, 96, 228, 256
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 4 cut(s) 72, 93, 225, 253
BstMWI GCNNNNNNNGC 2 cut(s) 303, 504
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 3 cut(s) 106, 399, 407
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 105, 405
CviAII CATG 2 cut(s) 401, 530
DdeI CTNAG 1 cut(s) 366
DpnI GATC 4 cut(s) 74, 95, 227, 255
DpnII GATC 4 cut(s) 72, 93, 225, 253
EaeI YGGCCR 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 270, 400
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 270, 400
ErhI CCWWGG 2 cut(s) 270, 400
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 2 cut(s) 404, 533
FatI CATG 2 cut(s) 400, 529
FauNDI CATATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 3 cut(s) 106, 399, 407
HapII CCGG 1 cut(s) 425
Hin1II CATG 2 cut(s) 404, 533
HincII GTYRAC 2 cut(s) 219, 326
HindII GTYRAC 2 cut(s) 219, 326
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 2 cut(s) 322, 327
HpaII CCGG 1 cut(s) 425
Hpy166II GTNNAC 2 cut(s) 219, 326
Hpy188I TCNGA 2 cut(s) 72, 369
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 219, 326
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 174, 390
HpyCH4IV ACGT 2 cut(s) 159, 204
HpyCH4V TGCA 3 cut(s) 446, 493, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 504
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 2 cut(s) 159, 204
Hsp92II CATG 2 cut(s) 404, 533
Kzo9I GATC 4 cut(s) 72, 93, 225, 253
LmnI GCTCC 3 cut(s) 53, 180, 469
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 544
MaeII ACGT 2 cut(s) 159, 204
MaeIII GTNAC 1 cut(s) 126
MalI GATC 4 cut(s) 74, 95, 227, 255
MboI GATC 4 cut(s) 72, 93, 225, 253
MboII GAAGA 4 cut(s) 22, 88, 103, 106
MhlI GDGCHC 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 1 cut(s) 561
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 2 cut(s) 321, 331
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 2 cut(s) 143, 478
Mox20I TGGCCA 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 303, 504
NcoI CCATGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 90
NdeII GATC 4 cut(s) 72, 93, 225, 253
NlaIII CATG 2 cut(s) 404, 533
NlaIV GGNNCC 5 cut(s) 182, 268, 406, 423, 465
PasI CCCWGGG 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 2 cut(s) 321, 330
PpsI GAGTC 2 cut(s) 321, 330
PsiI TTATAA 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 520
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 5 cut(s) 182, 268, 406, 423, 465
PspPI GGNCC 2 cut(s) 105, 405
SalI GTCGAC 1 cut(s) 324
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 4 cut(s) 72, 93, 225, 253
Sau96I GGNCC 2 cut(s) 105, 405
SchI GAGTC 2 cut(s) 321, 331
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 1 cut(s) 424
SetI ASST 9 cut(s) 30, 58, 124, 162, 207, 265, 354, 444, 500
SfaNI GCATC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 561
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 2 cut(s) 270, 400
TaaI ACNGT 2 cut(s) 174, 390
TaiI ACGT 2 cut(s) 162, 207
TaqI TCGA 2 cut(s) 24, 325
TasI AATT 1 cut(s) 561
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 518, 525
TspRI CASTG 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.