Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002194

Physical Location & Seq

Genomic Coordinates Reverse (-)

3888324 .. 3889434

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGAAGACCGGACTGTTTGATCTCGAAAAGCACTTTGCTTTCTACGGAGCTTACCACAGCAACCCGGTCAACATAGCGATTCATATGCTCTTCGTCTGGCCTATCCTCTTCACCGCTCTGCTCATCCTTTACTTCACGCCCTCGCTGCTCAGTTTCGGGGTTTCTGTGTTTGGGAACGACGTCGCTCTGCCTTTCAACATAGGCCTGCTGTTGACTATAATCTATTCGGTGTTTTACATCTGTTTGGACGCAAAAGCAGGCTCCTTGGGTGCTCTGCTCTGCGTAATTTGCTGGGTTGGTAGCTGTTTCCTTGGAACCGTACTCGGATTGTCCATCTCTTGGAAGGTTGTTCTGGTGACTCAGATAGTCTGTTGGACTGGACAATTTATCGGCCATGGAGTCTATGAGAAAAGGGCACCAGCTTTGTTGGACAATCTTGCACAAGCCTTTATCATGGCTCCCTTCTTTGTTCTGTTAGAGGCTCTGCAGATCTTCTTCGGGTACGAACCGTACCCCGGGTTTCAAGCAATTGTTCAAGCAAAGATTGATGCTGAAATCAGTGAATGGCAAGAGGAGAAGAAGAAACTGATCGATCCTAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF962

Protein Analysis

203

Amino Acids

22.45

Weight (kDa)

5.46

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18720 AT1G18720 AT1G74440 AT1G74440
fragaria_vesca	FvH4_4g31090 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680 FvH4_5g14680
malus_domestica	MD05G1207900.v1.1 MD06G1195800.v1.1 MD13G1069400.v1.1 MD14G1202900.v1.1 MD16G1069800.v1.1
prunus_persica	Prupe.1G277300_v2.0.a1 Prupe.4G149600_v2.0.a1 Prupe.5G195600_v2.0.a1
pyrus_communis	pycom05g19380 pycom13g06230 pycom14g16770 pycom14g16790 pycom16g06080
rosa_chinensis	RchiOBHm_Chr4g0439471 RchiOBHm_Chr7g0181721
rosa_laevigata	RLG00000005174 RLG00000006268
rosa_multiflora	Rmu_sc0000988.1_g000009 Rmu_sc0007276.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271780 Rroxscaffold_5G00380370
rosa_rugosa	Rorug04G0318500 Rorug06G0442900 Rorug06G0442900
rosa_samantha	Rh4BG381800 Rh4CG396400 Rh4DG376400 Rh7AG045500 Rh7CG046200 Rh7DG045100
rosa_wichuraiana	Rw4G031520 Rw7G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	3 cut(s)	324, 506, 515
AfiI	CCNNNNNNNGG	2 cut(s)	342, 518
AgsI	TTSAA	3 cut(s)	199, 527, 539
AluBI	AGCT	3 cut(s)	53, 306, 425
AluI	AGCT	3 cut(s)	53, 306, 425
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	3 cut(s)	101, 205, 394
ApeKI	GCWGC	1 cut(s)	148
AsuC2I	CCSGG	3 cut(s)	68, 519, 520
AsuHPI	GGTGA	2 cut(s)	106, 370
AvaI	CYCGRG	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcnI	CCSGG	3 cut(s)	68, 519, 520
BfmI	CTRYAG	1 cut(s)	488
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	3 cut(s)	68, 519, 520
BmeT110I	CYCGRG	1 cut(s)	518
BmiI	GGNNCC	4 cut(s)	265, 319, 420, 462
BmrFI	CCNGG	3 cut(s)	68, 519, 520
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	14
BpuMI	CCSGG	3 cut(s)	68, 519, 520
Bsa29I	ATCGAT	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	267, 313, 397, 517, 518
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 518
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	5 cut(s)	267, 313, 397, 517, 518
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	342, 518
BseMII	CTCAG	2 cut(s)	166, 377
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	3 cut(s)	103, 207, 396
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	3 cut(s)	12, 68, 519
BslI	CCNNNNNNNGG	2 cut(s)	342, 518
BsnI	GGCC	3 cut(s)	103, 207, 396
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	277, 421
Bsp143I	GATC	4 cut(s)	22, 492, 591, 595
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	3 cut(s)	103, 207, 396
BspCNI	CTCAG	2 cut(s)	165, 376
BspDI	ATCGAT	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	265, 319, 420, 462
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	1 cut(s)	590
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	418
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	5 cut(s)	267, 313, 397, 517, 518
BssMI	GATC	4 cut(s)	22, 492, 591, 595
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	267, 313, 397
Bst4CI	ACNGT	3 cut(s)	18, 322, 513
Bst6I	CTCTTC	2 cut(s)	98, 116
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	209, 262
BstDEI	CTNAG	2 cut(s)	152, 363
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	4 cut(s)	25, 495, 594, 598
BstMBI	GATC	4 cut(s)	22, 492, 591, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 291
BstSCI	CCNGG	3 cut(s)	66, 517, 518
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	103, 207, 396
BsuTUI	ATCGAT	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	209, 262
Cfr9I	CCCGGG	1 cut(s)	518
ClaI	ATCGAT	1 cut(s)	594
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	323, 505, 514
CviAII	CATG	2 cut(s)	398, 457
CviQI	GTAC	3 cut(s)	323, 505, 514
DdeI	CTNAG	2 cut(s)	152, 363
DpnI	GATC	4 cut(s)	24, 494, 593, 597
DpnII	GATC	4 cut(s)	22, 492, 591, 595
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	98, 116
EarI	CTCTTC	2 cut(s)	98, 116
Eco130I	CCWWGG	3 cut(s)	267, 313, 397
Eco147I	AGGCCT	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	518
EcoT14I	CCWWGG	3 cut(s)	267, 313, 397
ErhI	CCWWGG	3 cut(s)	267, 313, 397
FaeI	CATG	2 cut(s)	401, 460
FaiI	YATR	8 cut(s)	77, 87, 89, 203, 221, 399, 408, 458
FatI	CATG	2 cut(s)	397, 456
FauNDI	CATATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
GsaI	CCCAGC	1 cut(s)	298
HaeIII	GGCC	3 cut(s)	103, 207, 396
HapII	CCGG	3 cut(s)	12, 68, 519
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	401, 460
HincII	GTYRAC	2 cut(s)	73, 216
HindII	GTYRAC	2 cut(s)	73, 216
HinfI	GANTC	3 cut(s)	82, 361, 402
HpaII	CCGG	3 cut(s)	12, 68, 519
HphI	GGTGA	2 cut(s)	106, 370
Hpy166II	GTNNAC	2 cut(s)	73, 216
Hpy188I	TCNGA	2 cut(s)	329, 366
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	73, 216
Hpy99I	CGWCG	2 cut(s)	185, 188
HpyAV	CCTTC	2 cut(s)	340, 475
HpyCH4III	ACNGT	3 cut(s)	18, 322, 513
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	443, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 291
HpyF3I	CTNAG	2 cut(s)	152, 363
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	401, 460
Kzo9I	GATC	4 cut(s)	22, 492, 591, 595
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	50, 269, 466
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	541
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	24, 494, 593, 597
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	4 cut(s)	22, 492, 591, 595
MboII	GAAGA	7 cut(s)	19, 85, 103, 487, 490, 592, 595
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	2 cut(s)	277, 421
MluCI	AATT	3 cut(s)	288, 386, 531
MlyI	GAGTC	2 cut(s)	355, 411
MmeI	TCCRAC	2 cut(s)	356, 411
MnlI	CCTC	4 cut(s)	119, 154, 475, 568
MspI	CCGG	3 cut(s)	12, 68, 519
MspR9I	CCNGG	3 cut(s)	68, 519, 520
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	148, 291
NciI	CCSGG	3 cut(s)	68, 519, 520
NcoI	CCATGG	1 cut(s)	397
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	4 cut(s)	22, 492, 591, 595
NlaIII	CATG	2 cut(s)	401, 460
NlaIV	GGNNCC	4 cut(s)	265, 319, 420, 462
NmuCI	GTSAC	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	82
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	2 cut(s)	355, 410
PpsI	GAGTC	2 cut(s)	355, 410
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	4 cut(s)	265, 319, 420, 462
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	492
RsaI	GTAC	3 cut(s)	324, 506, 515
RsaNI	GTAC	3 cut(s)	323, 505, 514
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	22, 492, 591, 595
SchI	GAGTC	2 cut(s)	355, 411
ScrFI	CCNGG	3 cut(s)	68, 519, 520
SduI	GDGCHC	2 cut(s)	277, 421
SetI	ASST	5 cut(s)	55, 186, 308, 351, 427
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	288, 386, 531
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	3 cut(s)	66, 517, 518
StyI	CCWWGG	3 cut(s)	267, 313, 397
TaaI	ACNGT	3 cut(s)	18, 322, 513
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	27, 594
TasI	AATT	3 cut(s)	288, 386, 531
TfiI	GAWTC	1 cut(s)	82
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	63
TspMI	CCCGGG	1 cut(s)	518
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	342
XmaI	CCCGGG	1 cut(s)	518
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.