AT1G19840

Auxin-responsive family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003608
Physical Location & Seq
Reverse (-)
6872275 .. 6873358
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19840.1

Sequence Viewer

Length: 462 bp
ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATGCTCCGGCGATGGCGTAACAAAGCGCGGTTATCTTCGGTCAGCCGTTGTGTACCGTCGGATGTTCCATCTGGACACGTGGCAGTTTGTGTGGGTAGCGGTTGCAGGAGATTTGTGGTGCGTGCGTCGTACCTGAACCATCCTATCATAAGCAATCTTCTGGTTCAAGCTGAGGAAGAGTTTGGTTTTGCTAACCAAGGACCGTTGGTTATTCCTTGCGAAGAATCGGTTTTCGAAGAAGCGATCCGGTTTATATCCCGGTCTGATTCTTCTCGGTCTAGCCGGTTTACTTGTCCTGATGATCTTCAGAAATGTAACGGAGGGATCAAAATCAAAAGCAAGCTAGATCTGATGATTGAATCTCGACCGTTGCTTCATGGCGTCGCTGAGAAAGCTATCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

153

Amino Acids

17.14

Weight (kDa)

9.71

Isoelectric Point (pI)

64.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 104 1.4e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 85
AciI CCGC 2 cut(s) 85, 156
AclWI GGATC 3 cut(s) 25, 295, 389
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 347
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 438
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 111, 188
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 2 cut(s) 224, 416
AluBI AGCT 3 cut(s) 227, 400, 452
AluI AGCT 3 cut(s) 227, 400, 452
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 3 cut(s) 25, 295, 389
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 291
AvaII GGWCC 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 63, 133, 204
BceAI ACGGC 1 cut(s) 87
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 336, 401
BglII AGATCT 1 cut(s) 403
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse118I RCCGGY 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 124, 196
BseJI GATNNNNATC 1 cut(s) 386
BseMII CTCAG 3 cut(s) 64, 219, 435
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 425
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 425
BsiSI CCGG 5 cut(s) 6, 64, 304, 316, 340
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 5 cut(s) 30, 300, 358, 381, 403
BspACI CCGC 2 cut(s) 85, 156
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 63, 220, 436
BspFNI CGCG 1 cut(s) 85
BspPI GGATC 3 cut(s) 25, 295, 389
BspT104I TTCGAA 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 5 cut(s) 30, 300, 358, 381, 403
BssNI GRCGYC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 114, 261, 426
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 438
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 180, 398
BstDEI CTNAG 3 cut(s) 50, 228, 444
BstF5I GGATG 2 cut(s) 124, 196
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 5 cut(s) 33, 303, 361, 384, 406
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 5 cut(s) 30, 300, 358, 381, 403
BstMCI CGRYCG 1 cut(s) 425
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 314
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 30, 403
BstYI RGATCY 2 cut(s) 30, 403
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 124, 196
Cac8I GCNNGC 2 cut(s) 180, 398
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 2 cut(s) 171, 427
Csp6I GTAC 2 cut(s) 110, 187
CviAII CATG 1 cut(s) 434
CviJI RGCY 6 cut(s) 5, 102, 227, 339, 400, 452
CviKI_1 RGCY 6 cut(s) 5, 102, 227, 339, 400, 452
CviQI GTAC 2 cut(s) 110, 187
DdeI CTNAG 3 cut(s) 50, 228, 444
DpnI GATC 5 cut(s) 32, 302, 360, 383, 405
DpnII GATC 5 cut(s) 30, 300, 358, 381, 403
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 347
Eco72I CACGTG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 437
FaiI YATR 3 cut(s) 206, 311, 435
FatI CATG 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 2 cut(s) 131, 183
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 336, 401
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 5
HapII CCGG 5 cut(s) 6, 64, 304, 316, 340
HgaI GACGC 2 cut(s) 171, 427
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 4 cut(s) 48, 281, 323, 416
HpaII CCGG 5 cut(s) 6, 64, 304, 316, 340
Hpy166II GTNNAC 2 cut(s) 110, 345
Hpy188I TCNGA 5 cut(s) 53, 118, 322, 366, 408
Hpy188III TCNNGA 3 cut(s) 129, 353, 420
Hpy8I GTNNAC 2 cut(s) 110, 345
Hpy99I CGWCG 3 cut(s) 118, 187, 443
HpyCH4III ACNGT 3 cut(s) 114, 261, 426
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 24, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 3 cut(s) 50, 228, 444
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 5 cut(s) 30, 300, 358, 381, 403
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 36
MaeI CTAG 2 cut(s) 336, 401
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 35, 74, 371
MalI GATC 5 cut(s) 32, 302, 360, 383, 405
MboI GATC 5 cut(s) 30, 300, 358, 381, 403
MboII GAAGA 7 cut(s) 84, 206, 245, 290, 305, 318, 353
MflI RGATCY 2 cut(s) 30, 403
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 2 cut(s) 223, 371
MspI CCGG 5 cut(s) 6, 64, 304, 316, 340
MspR9I CCNGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 1 cut(s) 316
NdeII GATC 5 cut(s) 30, 300, 358, 381, 403
NlaIII CATG 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 35
NspV TTCGAA 1 cut(s) 291
PfeI GAWTC 3 cut(s) 281, 323, 416
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 42
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 136
PspCI CACGTG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 2 cut(s) 30, 403
RsaI GTAC 2 cut(s) 111, 188
RsaNI GTAC 2 cut(s) 110, 187
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 5 cut(s) 30, 300, 358, 381, 403
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 316
SetI ASST 5 cut(s) 138, 192, 229, 402, 454
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 257
SsiI CCGC 2 cut(s) 85, 156
SspMI CTAG 2 cut(s) 336, 401
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 114, 261, 426
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 291, 421
TaqII GACCGA 2 cut(s) 85, 321
TfiI GAWTC 3 cut(s) 281, 323, 416
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 2 cut(s) 23, 390
VpaK11BI GGWCC 1 cut(s) 257
XspI CTAG 2 cut(s) 336, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.