Rroxscaffold_7G00199740

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003608
Physical Location & Seq
Reverse (-)
46840223 .. 46840666
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199740.1

Sequence Viewer

Length: 444 bp
ATGTCCCCAGGAATGAGCAAATGCAACAAGCTCCGACGCATCGTCAGAATCCGTCAAATGCTACAACGCTGGCACAAGAAGGCGCACCTCAAGGCCTCACCGCTTGCGCCGTCGGACGTCCCAGAGGGACACGTCGCCGTCTGCGTGGGCAGCAGCTGCAGGAGGTTCATCGTGCGCGCCACCTACCTGAACCACCCCATCTTCAGGAAGCTTCTGGTGCAGGCCGAGGAGGAGTACGGCTTCGCCAACCAGCCAGGACCTCTGGCCATCCCATGCGACGAGTCGTTCTTCGAAGAGGTTCTTCGGATGCTCTCCAGGTCGGACTCTGGTAGATCCGGGAGGTTCTTGAGCCTGGAGGATCTCCAGAGACCCTGCCATGTTGATACTTTGAACAAGCTGCAAGTTCTGGATGAATCCTGGCCTTTGCTCCCAGGGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

147

Amino Acids

16.68

Weight (kDa)

9.14

Isoelectric Point (pI)

75.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 104 7.4e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 437
AccII CGCG 1 cut(s) 177
AciI CCGC 1 cut(s) 101
AclWI GGATC 2 cut(s) 327, 366
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 204, 437
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 1 cut(s) 391
AhdI GACNNNNNGTC 1 cut(s) 41
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 6 cut(s) 7, 253, 314, 351, 416, 430
AluBI AGCT 4 cut(s) 31, 156, 211, 397
AluI AGCT 4 cut(s) 31, 156, 211, 397
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 2 cut(s) 327, 366
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 4 cut(s) 93, 222, 264, 419
ApeKI GCWGC 4 cut(s) 150, 153, 156, 397
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 4 cut(s) 85, 109, 177, 179
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 90
AsuII TTCGAA 1 cut(s) 291
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 266
BbvI GCAGC 4 cut(s) 143, 162, 165, 384
BccI CCATC 3 cut(s) 206, 275, 431
BceAI ACGGC 3 cut(s) 94, 122, 253
BciT130I CCWGG 6 cut(s) 9, 255, 316, 353, 418, 432
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 361
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 4 cut(s) 151, 154, 157, 398
BlsI GCNGC 4 cut(s) 152, 155, 158, 399
Bme1390I CCNGG 7 cut(s) 9, 255, 316, 337, 353, 418, 432
Bme18I GGWCC 1 cut(s) 257
BmeRI GACNNNNNGTC 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 7 cut(s) 9, 255, 316, 337, 353, 418, 432
BmsI GCATC 2 cut(s) 48, 297
BpmI CTGGAG 3 cut(s) 298, 347, 374
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 74, 367
BpuMI CCSGG 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 4 cut(s) 7, 225, 430, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 437
BseBI CCWGG 6 cut(s) 9, 255, 316, 353, 418, 432
BseDI CCNNGG 4 cut(s) 7, 225, 430, 431
BseGI GGATG 4 cut(s) 267, 312, 415, 442
BseLI CCNNNNNNNGG 2 cut(s) 204, 437
BsePI GCGCGC 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 242, 245
BseXI GCAGC 4 cut(s) 143, 162, 165, 384
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 95, 224, 266, 421
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 104, 141
BslI CCNNNNNNNGG 2 cut(s) 204, 437
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 104, 141
BsnI GGCC 4 cut(s) 95, 224, 266, 421
Bso31I GGTCTC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 332, 358
BspACI CCGC 1 cut(s) 101
BspANI GGCC 4 cut(s) 95, 224, 266, 421
BspFNI CGCG 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 327, 366
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 361
BssECI CCNNGG 4 cut(s) 7, 225, 430, 431
BssHII GCGCGC 1 cut(s) 175
BssMI GATC 2 cut(s) 332, 358
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 6 cut(s) 9, 255, 316, 353, 418, 432
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 71, 105, 177, 222
BstF5I GGATG 4 cut(s) 267, 312, 415, 442
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 4 cut(s) 85, 109, 177, 179
BstKTI GATC 2 cut(s) 335, 361
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 332, 358
BstMWI GCNNNNNNNGC 3 cut(s) 150, 156, 217
BstNI CCWGG 6 cut(s) 9, 255, 316, 353, 418, 432
BstSCI CCNGG 7 cut(s) 7, 253, 314, 335, 351, 416, 430
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 143, 162, 165, 384
BstX2I RGATCY 2 cut(s) 332, 358
BstYI RGATCY 2 cut(s) 332, 358
BsuRI GGCC 4 cut(s) 95, 224, 266, 421
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 4 cut(s) 267, 312, 415, 442
Cac8I GCNNGC 4 cut(s) 71, 105, 177, 222
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 4 cut(s) 85, 109, 177, 179
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 273, 377
CviQI GTAC 1 cut(s) 235
DpnI GATC 2 cut(s) 334, 360
DpnII GATC 2 cut(s) 332, 358
DriI GACNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 6 cut(s) 7, 253, 314, 351, 416, 430
FaeI CATG 2 cut(s) 276, 380
FaiI YATR 2 cut(s) 274, 378
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 2 cut(s) 272, 376
Fnu4HI GCNGC 4 cut(s) 151, 154, 157, 398
FokI GGATG 3 cut(s) 254, 319, 422
Fsp4HI GCNGC 4 cut(s) 151, 154, 157, 398
GlaI GCGC 4 cut(s) 84, 108, 176, 178
GluI GCNGC 4 cut(s) 151, 154, 157, 398
GsuI CTGGAG 3 cut(s) 298, 347, 374
HaeIII GGCC 4 cut(s) 95, 224, 266, 421
HapII CCGG 1 cut(s) 336
HgaI GACGC 1 cut(s) 45
HhaI GCGC 4 cut(s) 85, 109, 177, 179
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 276, 380
Hin6I GCGC 4 cut(s) 83, 107, 175, 177
HinP1I GCGC 4 cut(s) 83, 107, 175, 177
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 4 cut(s) 48, 281, 323, 413
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 90
Hpy188I TCNGA 5 cut(s) 35, 47, 115, 306, 322
Hpy188III TCNNGA 4 cut(s) 205, 346, 364, 407
Hpy99I CGWCG 4 cut(s) 39, 115, 137, 281
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 2 cut(s) 117, 132
HpyCH4V TGCA 4 cut(s) 24, 159, 220, 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 156, 217
HpySE526I ACGT 2 cut(s) 117, 132
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 276, 380
HspAI GCGC 4 cut(s) 83, 107, 175, 177
Kzo9I GATC 2 cut(s) 332, 358
LmnI GCTCC 2 cut(s) 36, 432
Lsp1109I GCAGC 4 cut(s) 143, 162, 165, 384
LweI GCATC 2 cut(s) 48, 297
MaeII ACGT 2 cut(s) 117, 132
MalI GATC 2 cut(s) 334, 360
MboI GATC 2 cut(s) 332, 358
MboII GAAGA 4 cut(s) 193, 280, 293, 305
MflI RGATCY 2 cut(s) 332, 358
MlsI TGGCCA 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 290, 317
MmeI TCCRAC 3 cut(s) 58, 93, 300
Mox20I TGGCCA 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 7 cut(s) 9, 255, 316, 337, 353, 418, 432
MvaI CCWGG 6 cut(s) 9, 255, 316, 353, 418, 432
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 150, 156, 217
NciI CCSGG 1 cut(s) 337
NdeII GATC 2 cut(s) 332, 358
NlaIII CATG 2 cut(s) 276, 380
NmeAIII GCCGAG 1 cut(s) 250
NspV TTCGAA 1 cut(s) 291
PasI CCCWGGG 1 cut(s) 431
PauI GCGCGC 1 cut(s) 175
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 48, 413
PflMI CCANNNNNTGG 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 4 cut(s) 152, 155, 158, 399
PleI GAGTC 2 cut(s) 289, 317
PpsI GAGTC 2 cut(s) 289, 317
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 6 cut(s) 7, 253, 314, 351, 416, 430
PspGI CCWGG 6 cut(s) 7, 253, 314, 351, 416, 430
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 332, 358
PteI GCGCGC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SatI GCNGC 4 cut(s) 151, 154, 157, 398
Sau3AI GATC 2 cut(s) 332, 358
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 2 cut(s) 290, 317
ScrFI CCNGG 7 cut(s) 9, 255, 316, 337, 353, 418, 432
SfaNI GCATC 2 cut(s) 48, 297
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 89, 346
SmoI CTYRAG 2 cut(s) 89, 346
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 7 cut(s) 7, 253, 314, 335, 351, 416, 430
TaiI ACGT 2 cut(s) 120, 135
TaqI TCGA 1 cut(s) 291
TfiI GAWTC 2 cut(s) 48, 413
TseI GCWGC 4 cut(s) 150, 153, 156, 397
TspDTI ATGAA 2 cut(s) 157, 426
TspGWI ACGGA 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 297
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.