AT5G10990

Auxin-responsive family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003608
Physical Location & Seq
Forward (+)
3476820 .. 3477723
904 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10990.1

Sequence Viewer

Length: 447 bp
ATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGACACATTGTGAAGCTAAGGCAAATGCTTCGGCAATGGCGTAACAAGGCGCGAATGTCGTCTGTCAGACGATCTGTGCCGTCAGATGTACCGTCAGGACACGTGGCGGTTTACGTTGGGAGAAGTTGCAGGAGATTCGTGGTGCTTGCGACGTATCTGAACCACCCCATTCTTATGAATCTCTTGGTTAAGGCTGAAGAGGAGTTCGGTTTTGCTAACCAGGGACCGTTGGTTATCCCGTGTGAAGAATCGGTTTTCGAGGAATCGATTCGGTTTATAACTCGGTCAAGTCGGTTTACTTGTACCGATGATTTAAAGAAGAATCGCCACGGTGGTATTAGGAGCAAGCTGGATCTATTGATGGAATCTCGGCCGTTGCTTCACGGCGTCTCCGAGAAGGCTATCATCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

148

Amino Acids

16.86

Weight (kDa)

10.23

Isoelectric Point (pI)

70.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 3e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccII CGCG 1 cut(s) 85
AciI CCGC 1 cut(s) 140
AclWI GGATC 2 cut(s) 25, 393
AcoI YGGCCR 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 249
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 420
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 123, 337
AflIII ACRYGT 1 cut(s) 133
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 2 cut(s) 49, 382
AluI AGCT 2 cut(s) 49, 382
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 2 cut(s) 25, 393
AoxI GGCC 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 136
BccI CCATC 1 cut(s) 388
BceAI ACGGC 3 cut(s) 97, 391, 433
BcgI CGANNNNNNTGC 4 cut(s) 44, 78, 151, 185
BciT130I CCWGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 253, 361
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 253, 361
BseMI GCAATG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 248
BseX3I CGGCCG 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 407
BshFI GGCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 407
BslFI GGGAC 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 427
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 1 cut(s) 406
Bsp143I GATC 3 cut(s) 30, 104, 385
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 299
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 25, 393
BsrDI GCAATG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 253, 361
BssMI GATC 3 cut(s) 30, 104, 385
BssNI GRCGYC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 3 cut(s) 126, 261, 365
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 420
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 180, 380
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 3 cut(s) 33, 107, 388
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 3 cut(s) 30, 104, 385
BstMCI CGRYCG 1 cut(s) 407
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstUI CGCG 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 30, 385
BstYI RGATCY 2 cut(s) 30, 385
BstZI CGGCCG 1 cut(s) 404
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 180, 380
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 299
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 122, 336
CviJI RGCY 6 cut(s) 5, 49, 227, 382, 406, 434
CviKI_1 RGCY 6 cut(s) 5, 49, 227, 382, 406, 434
CviQI GTAC 2 cut(s) 122, 336
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 32, 106, 387
DpnII GATC 3 cut(s) 30, 104, 385
DraI TTTAAA 1 cut(s) 348
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 404
EagI CGGCCG 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 257
Eco52I CGGCCG 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 427
FaiI YATR 2 cut(s) 209, 311
FaqI GGGAC 1 cut(s) 270
GlaI GCGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 406
HgaI GACGC 1 cut(s) 409
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 420
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 7 cut(s) 168, 211, 281, 296, 301, 355, 398
Hpy166II GTNNAC 2 cut(s) 145, 330
Hpy188I TCNGA 6 cut(s) 17, 35, 101, 118, 192, 427
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 2 cut(s) 145, 330
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 126, 261, 365
HpyCH4IV ACGT 3 cut(s) 135, 147, 185
HpyCH4V TGCA 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 3 cut(s) 135, 147, 185
Hsp92I GRCGYC 1 cut(s) 420
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 3 cut(s) 30, 104, 385
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 6 cut(s) 114, 148, 239, 266, 368, 427
MaeII ACGT 3 cut(s) 135, 147, 185
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 32, 106, 387
MboI GATC 3 cut(s) 30, 104, 385
MboII GAAGA 3 cut(s) 242, 290, 364
MflI RGATCY 2 cut(s) 30, 385
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 2 cut(s) 226, 286
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 222, 347
MslI CAYNNNNRTG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 85
NdeII GATC 3 cut(s) 30, 104, 385
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 382
PcsI WCGNNNNNNNCGW 2 cut(s) 70, 423
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 7 cut(s) 168, 211, 281, 296, 301, 355, 398
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 252
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 2 cut(s) 30, 385
RsaI GTAC 2 cut(s) 123, 337
RsaNI GTAC 2 cut(s) 122, 336
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 222, 347
Sau3AI GATC 3 cut(s) 30, 104, 385
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 254
SetI ASST 6 cut(s) 13, 51, 138, 150, 188, 384
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 206
SsiI CCGC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 126, 261, 365
TaiI ACGT 3 cut(s) 138, 150, 188
TaqI TCGA 2 cut(s) 291, 299
TaqII GACCGA 1 cut(s) 306
TfiI GAWTC 7 cut(s) 168, 211, 281, 296, 301, 355, 398
Tru1I TTAA 2 cut(s) 222, 347
Tru9I TTAA 2 cut(s) 222, 347
TspDTI ATGAA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.