FvH4_2g10760

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003608
Physical Location & Seq
Forward (+)
9478373 .. 9479445
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10760.t1

Sequence Viewer

Length: 750 bp
ATGATCATTTATCTTTTTAAAAATCTCATAATTCATATAATTATACACATTTACAATATAGCCAGGTATGTCAACAATTTCAACAACAGGCATAAACTCGTAAATATCTCCAACTCCAAGGTCATTCCAAATTCCTTCAAACCATATAACCTTTCGGTTCTCCGACTAAAGAAACAACAACTCTCATTCATTACCCATTATCAAACACAAACTTTCCGCCACCTTTTTCCAGTGGACTGGAGCGCATCTCTTCACTTTACCGTACTCCCAAACTGCATCATTTTCCGGCAAAAAATGTCGACTGGAATGAGCAAATCCAACAAGCTCCGACGCATCGTCAGAATCCGTCAAATGCTACAACGCTGGCACAAGAAGGCGCACCTCAAAGCCGCCTCCCCGTCCGACGTCCCCGCAGGACACGTCGCCGTCTGCGTCGGCAGCAACGGCAGACGGTTCATCGTGCGAGCAACGTACCTGAACCACCCCATCTTCAAGAAGCTGCTGGTGCAGGCCGAGGAGGAGTATGGCTTCGCCAACCAGCCGGGACCTCTGACCATCCCATGCGACGAGTCGTTCTTCGAAGAGGTTCTGCAGGTGCTCTCCAGGTCGGAGTCTGCAGGTAGATCCGGGAGGTTCTTGAGCTTGGAGGATCTGCAGAGACCCTGCCATGTTGATATTCTGAACAATCTTCAGGTTCTGGATGAATCATGGCCTTTGCTTCATGGGATGGCTGATAAGTCAGTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

250

Amino Acids

28.79

Weight (kDa)

9.95

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 114 - 200 1.6e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
AatII GACGTC 1 cut(s) 408
Acc36I ACCTGC 2 cut(s) 583, 608
AccI GTMKAC 1 cut(s) 299
AciI CCGC 3 cut(s) 217, 390, 411
AclWI GGATC 2 cut(s) 618, 657
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 2 cut(s) 264, 473
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 3 cut(s) 82, 139, 493
AhdI GACNNNNNGTC 1 cut(s) 335
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 2 cut(s) 62, 602
AluBI AGCT 3 cut(s) 325, 499, 642
AluI AGCT 3 cut(s) 325, 499, 642
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 2 cut(s) 618, 657
AlwNI CAGNNNCTG 1 cut(s) 697
AoxI GGCC 2 cut(s) 510, 710
ApeKI GCWGC 2 cut(s) 438, 499
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 2 cut(s) 245, 379
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 2 cut(s) 543, 628
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 450, 486
BccI CCATC 3 cut(s) 494, 563, 721
BceAI ACGGC 2 cut(s) 410, 460
BciT130I CCWGG 2 cut(s) 64, 604
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 543, 628
BcoDI GTCTC 1 cut(s) 652
BfmI CTRYAG 3 cut(s) 590, 615, 653
BfuAI ACCTGC 2 cut(s) 583, 608
BisI GCNGC 3 cut(s) 390, 439, 500
BlsI GCNGC 3 cut(s) 391, 440, 501
Bme1390I CCNGG 4 cut(s) 64, 543, 604, 628
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 4 cut(s) 64, 543, 604, 628
BmsI GCATC 3 cut(s) 254, 285, 342
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BpmI CTGGAG 2 cut(s) 259, 586
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 658
BpuMI CCSGG 2 cut(s) 543, 628
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 2 cut(s) 117, 513
Bse1I ACTGG 3 cut(s) 230, 242, 307
BseBI CCWGG 2 cut(s) 64, 604
BseDI CCNNGG 2 cut(s) 117, 513
BseGI GGATG 3 cut(s) 555, 706, 732
BseNI ACTGG 3 cut(s) 230, 242, 307
BseRI GAGGAG 2 cut(s) 530, 533
BseXI GCAGC 2 cut(s) 450, 486
BsgI GTGCAG 1 cut(s) 527
BshFI GGCC 2 cut(s) 512, 712
BsiHKAI GWGCWC 1 cut(s) 600
BsiSI CCGG 3 cut(s) 286, 542, 627
BslFI GGGAC 2 cut(s) 392, 558
BsmAI GTCTC 1 cut(s) 652
BsmFI GGGAC 2 cut(s) 392, 558
BsnI GGCC 2 cut(s) 512, 712
Bso31I GGTCTC 1 cut(s) 652
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 3 cut(s) 3, 623, 649
BspACI CCGC 3 cut(s) 217, 390, 411
BspANI GGCC 2 cut(s) 512, 712
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 3 cut(s) 594, 619, 657
BspMI ACCTGC 2 cut(s) 583, 608
BspPI GGATC 2 cut(s) 618, 657
BspT104I TTCGAA 1 cut(s) 579
BspTNI GGTCTC 1 cut(s) 652
BsrI ACTGG 3 cut(s) 230, 242, 307
BssECI CCNNGG 2 cut(s) 117, 513
BssMI GATC 3 cut(s) 3, 623, 649
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 64, 604
Bst4CI ACNGT 2 cut(s) 262, 453
Bst6I CTCTTC 2 cut(s) 255, 576
BstACI GRCGYC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 365, 465, 510
BstF5I GGATG 3 cut(s) 555, 706, 732
BstHHI GCGC 2 cut(s) 245, 379
BstKTI GATC 3 cut(s) 6, 626, 652
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 3 cut(s) 3, 623, 649
BstMWI GCNNNNNNNGC 3 cut(s) 438, 444, 505
BstNI CCWGG 2 cut(s) 64, 604
BstSCI CCNGG 4 cut(s) 62, 541, 602, 626
BstSFI CTRYAG 3 cut(s) 590, 615, 653
BstV1I GCAGC 2 cut(s) 450, 486
BstX2I RGATCY 2 cut(s) 623, 649
BstXI CCANNNNNNTGG 1 cut(s) 237
BstYI RGATCY 2 cut(s) 623, 649
BsuRI GGCC 2 cut(s) 512, 712
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 3 cut(s) 555, 706, 732
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 2 cut(s) 583, 608
Cac8I GCNNGC 3 cut(s) 365, 465, 510
CaiI CAGNNNCTG 1 cut(s) 697
CfoI GCGC 2 cut(s) 245, 379
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 2 cut(s) 339, 421
Csp6I GTAC 2 cut(s) 263, 472
CviAII CATG 4 cut(s) 561, 668, 708, 722
CviQI GTAC 2 cut(s) 263, 472
DpnI GATC 3 cut(s) 5, 625, 651
DpnII GATC 3 cut(s) 3, 623, 649
DraI TTTAAA 1 cut(s) 19
DriI GACNNNNNGTC 1 cut(s) 335
Eam1104I CTCTTC 2 cut(s) 255, 576
Eam1105I GACNNNNNGTC 1 cut(s) 335
EarI CTCTTC 2 cut(s) 255, 576
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 2 cut(s) 62, 602
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 4 cut(s) 564, 671, 711, 725
FaqI GGGAC 2 cut(s) 392, 558
FatI CATG 4 cut(s) 560, 667, 707, 721
FauI CCCGC 1 cut(s) 418
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 390, 439, 500
FokI GGATG 3 cut(s) 542, 713, 739
Fsp4HI GCNGC 3 cut(s) 390, 439, 500
GlaI GCGC 2 cut(s) 244, 378
GluI GCNGC 3 cut(s) 390, 439, 500
GsuI CTGGAG 2 cut(s) 259, 586
HaeIII GGCC 2 cut(s) 512, 712
HapII CCGG 3 cut(s) 286, 542, 627
HgaI GACGC 2 cut(s) 339, 421
HhaI GCGC 2 cut(s) 245, 379
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 4 cut(s) 564, 671, 711, 725
Hin6I GCGC 2 cut(s) 243, 377
HinP1I GCGC 2 cut(s) 243, 377
HincII GTYRAC 2 cut(s) 73, 300
HindII GTYRAC 2 cut(s) 73, 300
HinfI GANTC 4 cut(s) 342, 569, 611, 704
HpaII CCGG 3 cut(s) 286, 542, 627
Hpy166II GTNNAC 3 cut(s) 73, 235, 300
Hpy188I TCNGA 7 cut(s) 164, 329, 341, 403, 552, 610, 681
Hpy188III TCNNGA 3 cut(s) 493, 637, 698
Hpy8I GTNNAC 3 cut(s) 73, 235, 300
Hpy99I CGWCG 5 cut(s) 333, 407, 425, 437, 569
HpyAV CCTTC 2 cut(s) 145, 367
HpyCH4III ACNGT 2 cut(s) 262, 453
HpyCH4IV ACGT 3 cut(s) 405, 420, 470
HpyCH4V TGCA 5 cut(s) 276, 508, 592, 617, 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 438, 444, 505
HpySE526I ACGT 3 cut(s) 405, 420, 470
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 564, 671, 711, 725
HspAI GCGC 2 cut(s) 243, 377
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 623, 649
LmnI GCTCC 2 cut(s) 240, 330
Lsp1109I GCAGC 2 cut(s) 450, 486
LweI GCATC 3 cut(s) 254, 285, 342
MaeII ACGT 3 cut(s) 405, 420, 470
MalI GATC 3 cut(s) 5, 625, 651
MboI GATC 3 cut(s) 3, 623, 649
MboII GAAGA 5 cut(s) 242, 481, 568, 593, 680
MflI RGATCY 2 cut(s) 623, 649
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 4 cut(s) 30, 39, 76, 130
MlyI GAGTC 2 cut(s) 578, 620
MmeI TCCRAC 6 cut(s) 135, 187, 342, 352, 426, 588
MnlI CCTC 8 cut(s) 392, 403, 508, 511, 558, 577, 624, 640
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 18, 748
MspI CCGG 3 cut(s) 286, 542, 627
MspR9I CCNGG 4 cut(s) 64, 543, 604, 628
MvaI CCWGG 2 cut(s) 64, 604
MwoI GCNNNNNNNGC 3 cut(s) 438, 444, 505
NciI CCSGG 2 cut(s) 543, 628
NdeII GATC 3 cut(s) 3, 623, 649
NlaIII CATG 4 cut(s) 564, 671, 711, 725
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 1 cut(s) 538
NspV TTCGAA 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 342, 704
PfoI TCCNGGA 1 cut(s) 626
PkrI GCNGC 3 cut(s) 391, 440, 501
PleI GAGTC 2 cut(s) 577, 619
PpsI GAGTC 2 cut(s) 577, 619
PpuMI RGGWCCY 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 62, 602
PspGI CCWGG 2 cut(s) 62, 602
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 1 cut(s) 545
PspPPI RGGWCCY 1 cut(s) 545
PstI CTGCAG 3 cut(s) 594, 619, 657
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 2 cut(s) 623, 649
RsaI GTAC 2 cut(s) 264, 473
RsaNI GTAC 2 cut(s) 263, 472
SalI GTCGAC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 18, 748
SatI GCNGC 3 cut(s) 390, 439, 500
Sau3AI GATC 3 cut(s) 3, 623, 649
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 2 cut(s) 578, 620
ScrFI CCNGG 4 cut(s) 64, 543, 604, 628
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 3 cut(s) 254, 285, 342
SfcI CTRYAG 3 cut(s) 590, 615, 653
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 4 cut(s) 30, 39, 76, 130
SsiI CCGC 3 cut(s) 217, 390, 411
StyD4I CCNGG 4 cut(s) 62, 541, 602, 626
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 262, 453
TaiI ACGT 3 cut(s) 408, 423, 473
TaqI TCGA 2 cut(s) 299, 579
TasI AATT 4 cut(s) 30, 39, 76, 130
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 2 cut(s) 342, 704
Tru1I TTAA 2 cut(s) 18, 748
Tru9I TTAA 2 cut(s) 18, 748
TscAI CASTG 1 cut(s) 237
TseI GCWGC 2 cut(s) 438, 499
TspDTI ATGAA 5 cut(s) 23, 178, 445, 710, 717
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 585
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.