FvH4_2g38740

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003608
Physical Location & Seq
Reverse (-)
27967244 .. 27968412
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38740.t1

Sequence Viewer

Length: 438 bp
ATGTCTTCCGGAGCCACAAAATGCAGCAAGATCCGCCACATTGTGAAGCTTCGCCAGTTGCTGCGACGGTGGCGCAGCAAGGCCCGCATGTCGTCAGCCAACCGCACACCGCCGGATGTCCCTGCCGGACACGTGGCCATCCGCGTCGGCCCCTACTGCACCAGATACGTGATGCCGGCGTCGTACCTGAACCACCCCGTGTTCAAGAAGCTTTTAGTACAAGCGGAGGAGGAGTACGGCTTCACCAACCAAGGCCCTTTGGCGATCCCATGCGACGAGTCGTTGTTCGAAGAGGTGGTCCGGTACATTTCCCGATCGGAGTCCGCCGGGTCGGCCAGGTTCGACAGGCACTGCCACGTTGACGTCAGGAGTAACTTCGACTTATTGGCCGATTCCCGACCGTTGCTTCGTGGGTTTTCCGAGAAGACAATCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

146

Amino Acids

16.54

Weight (kDa)

9.78

Isoelectric Point (pI)

68.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 3e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 366
AccII CGCG 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 7 cut(s) 34, 85, 103, 110, 142, 224, 324
AclWI GGATC 2 cut(s) 25, 259
AcoI YGGCCR 3 cut(s) 135, 333, 387
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 2 cut(s) 179, 363
AdeI CACNNNGTG 2 cut(s) 43, 199
AfaI GTAC 4 cut(s) 185, 219, 236, 305
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 2 cut(s) 49, 211
AluI AGCT 2 cut(s) 49, 211
AlwI GGATC 2 cut(s) 25, 259
AlwNI CAGNNNCTG 2 cut(s) 61, 351
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 6 cut(s) 81, 135, 148, 253, 333, 387
ApeKI GCWGC 3 cut(s) 24, 61, 75
ArsI GACNNNNNNTTYG 4 cut(s) 282, 314, 390, 422
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 82, 149, 254, 298
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 36, 48, 87
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 337
BcnI CCSGG 1 cut(s) 328
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 3 cut(s) 25, 62, 76
BlsI GCNGC 3 cut(s) 26, 63, 77
Bme1390I CCNGG 2 cut(s) 328, 337
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 82, 149, 254, 298
BmiI GGNNCC 2 cut(s) 13, 151
BmrFI CCNGG 2 cut(s) 328, 337
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 328
BsaAI YACGTR 2 cut(s) 133, 169
BsaHI GRCGYC 2 cut(s) 179, 363
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 2 cut(s) 8, 300
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 121, 138
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 2 cut(s) 242, 245
BseXI GCAGC 3 cut(s) 36, 48, 87
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 2 cut(s) 317, 401
BshFI GGCC 6 cut(s) 83, 137, 150, 255, 335, 389
BsiEI CGRYCG 2 cut(s) 317, 401
BsiSI CCGG 6 cut(s) 9, 113, 126, 176, 301, 327
BslFI GGGAC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 6 cut(s) 83, 137, 150, 255, 335, 389
Bsp119I TTCGAA 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 3 cut(s) 30, 264, 314
BspACI CCGC 7 cut(s) 34, 85, 103, 110, 142, 224, 324
BspANI GGCC 6 cut(s) 83, 137, 150, 255, 335, 389
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 13, 151
BspPI GGATC 2 cut(s) 25, 259
BspT104I TTCGAA 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 30, 264, 314
BssNI GRCGYC 2 cut(s) 179, 363
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 69, 402
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 2 cut(s) 179, 363
BstBAI YACGTR 2 cut(s) 133, 169
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 85, 177
BstF5I GGATG 2 cut(s) 121, 138
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 33, 267, 317
BstMBI GATC 3 cut(s) 30, 264, 314
BstMCI CGRYCG 2 cut(s) 317, 401
BstMWI GCNNNNNNNGC 5 cut(s) 33, 70, 84, 156, 332
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 326, 335
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 36, 48, 87
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 6 cut(s) 83, 137, 150, 255, 335, 389
BtsCI GGATG 2 cut(s) 121, 138
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 85, 177
CaiI CAGNNNCTG 2 cut(s) 61, 351
CfoI GCGC 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 4 cut(s) 82, 149, 254, 298
CseI GACGC 2 cut(s) 133, 168
Csp6I GTAC 4 cut(s) 184, 218, 235, 304
CviAII CATG 2 cut(s) 88, 270
CviQI GTAC 4 cut(s) 184, 218, 235, 304
DpnI GATC 3 cut(s) 32, 266, 316
DpnII GATC 3 cut(s) 30, 264, 314
DraIII CACNNNGTG 2 cut(s) 43, 199
EaeI YGGCCR 3 cut(s) 135, 333, 387
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 2 cut(s) 23, 313
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 298
Eco72I CACGTG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 91, 273
FaiI YATR 2 cut(s) 89, 271
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 87, 269
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 3 cut(s) 25, 62, 76
FokI GGATG 2 cut(s) 125, 128
Fsp4HI GCNGC 3 cut(s) 25, 62, 76
GlaI GCGC 1 cut(s) 74
GluI GCNGC 3 cut(s) 25, 62, 76
HaeIII GGCC 6 cut(s) 83, 137, 150, 255, 335, 389
HapII CCGG 6 cut(s) 9, 113, 126, 176, 301, 327
HgaI GACGC 2 cut(s) 133, 168
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 2 cut(s) 179, 363
Hin1II CATG 2 cut(s) 91, 273
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 2 cut(s) 47, 209
HinfI GANTC 3 cut(s) 278, 320, 392
HpaII CCGG 6 cut(s) 9, 113, 126, 176, 301, 327
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 319, 421
Hpy188III TCNNGA 5 cut(s) 9, 205, 312, 367, 396
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 4 cut(s) 69, 149, 184, 278
HpyCH4III ACNGT 2 cut(s) 69, 402
HpyCH4IV ACGT 4 cut(s) 132, 168, 357, 363
HpyCH4V TGCA 2 cut(s) 24, 159
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 70, 84, 156, 332
HpySE526I ACGT 4 cut(s) 132, 168, 357, 363
Hsp92I GRCGYC 2 cut(s) 179, 363
Hsp92II CATG 2 cut(s) 91, 273
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 8
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 30, 264, 314
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 3 cut(s) 36, 48, 87
LweI GCATC 1 cut(s) 162
MaeII ACGT 4 cut(s) 132, 168, 357, 363
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 32, 266, 316
MboI GATC 3 cut(s) 30, 264, 314
MboII GAAGA 2 cut(s) 302, 436
MflI RGATCY 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 2 cut(s) 287, 329
MnlI CCTC 3 cut(s) 220, 223, 286
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 6 cut(s) 9, 113, 126, 176, 301, 327
MspR9I CCNGG 2 cut(s) 328, 337
MvaI CCWGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 5 cut(s) 33, 70, 84, 156, 332
NaeI GCCGGC 1 cut(s) 177
NciI CCSGG 1 cut(s) 328
NdeII GATC 3 cut(s) 30, 264, 314
NgoMIV GCCGGC 1 cut(s) 175
NlaIII CATG 2 cut(s) 91, 273
NlaIV GGNNCC 2 cut(s) 13, 151
NspI RCATGY 1 cut(s) 91
NspV TTCGAA 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 3 cut(s) 26, 63, 77
Ple19I CGATCG 1 cut(s) 317
PleI GAGTC 2 cut(s) 286, 328
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 2 cut(s) 286, 328
Ppu21I YACGTR 2 cut(s) 133, 169
Psp6I CCWGG 1 cut(s) 335
PspCI CACGTG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 13, 151
PspPI GGNCC 4 cut(s) 82, 149, 254, 298
PstNI CAGNNNCTG 2 cut(s) 61, 351
PsuI RGATCY 1 cut(s) 30
PvuI CGATCG 1 cut(s) 317
RsaI GTAC 4 cut(s) 185, 219, 236, 305
RsaNI GTAC 4 cut(s) 184, 218, 235, 304
SatI GCNGC 3 cut(s) 25, 62, 76
Sau3AI GATC 3 cut(s) 30, 264, 314
Sau96I GGNCC 4 cut(s) 82, 149, 254, 298
SchI GAGTC 2 cut(s) 287, 329
ScrFI CCNGG 2 cut(s) 328, 337
SetI ASST 9 cut(s) 51, 135, 171, 189, 213, 297, 341, 360, 366
SfaNI GCATC 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 1 cut(s) 298
SsiI CCGC 7 cut(s) 34, 85, 103, 110, 142, 224, 324
StyD4I CCNGG 2 cut(s) 326, 335
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 69, 402
TaiI ACGT 4 cut(s) 135, 171, 360, 366
TaqI TCGA 3 cut(s) 288, 342, 378
TatI WGTACW 1 cut(s) 217
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 1 cut(s) 356
TseI GCWGC 3 cut(s) 24, 61, 75
TspRI CASTG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 1 cut(s) 91
ZraI GACGTC 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.