Rroxscaffold_7G00165610

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003608
Physical Location & Seq
Reverse (-)
7297994 .. 7299069
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165610.1

Sequence Viewer

Length: 426 bp
ATGTCAACCGGAGCCACAAAATGCAGCAAGATCCGCCACATTGTGAAGCTCCGCCAGTTGCTGCGGCGGTGGCGCAGCAAGGCCCGCATGTCGTCAGCTAACCGCACACCGTCGGATGTCCCAGCGGGACACGTGGCCATCTGCGTCGGCCCCTACTGCACCAGATACGTCATGCCCGCGTCGTACCTGAACCACCCCGTGTTCAAGAAGCTCCTCGTACAAGCCGAGGAGGAGTACGGCTTCACTAACCAAGGCCCGCTGGCGATCCCATGCGACGAGTCACTCTTTGAAGAGGTGTTGCGGTACGTTTCCGGATCGGAGTCCGGCGGGTCGGCCCGGTACTGTCACGTGGACGTGAGAACGGTTGTGGAAGTTATAATGGCACCAGCCCACGTGAATGCAGCTGCAGAGCATGAGCTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

141

Amino Acids

15.63

Weight (kDa)

8.88

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 102 6.1e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 311
AclWI GGATC 3 cut(s) 25, 259, 322
AcoI YGGCCR 1 cut(s) 135
AcvI CACGTG 3 cut(s) 133, 349, 394
AdeI CACNNNGTG 2 cut(s) 43, 199
AfaI GTAC 5 cut(s) 185, 219, 236, 305, 341
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 205, 290
AjiI CACGTC 1 cut(s) 355
AluBI AGCT 5 cut(s) 49, 98, 211, 404, 418
AluI AGCT 5 cut(s) 49, 98, 211, 404, 418
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 3 cut(s) 25, 259, 322
AlwNI CAGNNNCTG 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 5 cut(s) 81, 135, 148, 253, 333
ApeKI GCWGC 5 cut(s) 24, 61, 75, 401, 404
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 82, 149, 254, 334
AsuC2I CCSGG 1 cut(s) 337
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 420
BbrPI CACGTG 3 cut(s) 133, 349, 394
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 5 cut(s) 36, 48, 87, 391, 413
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 424
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 6 cut(s) 25, 62, 65, 76, 402, 405
BlsI GCNGC 6 cut(s) 26, 63, 66, 77, 403, 406
Bme1390I CCNGG 1 cut(s) 337
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 4 cut(s) 82, 149, 254, 334
BmiI GGNNCC 3 cut(s) 13, 151, 384
BmrFI CCNGG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 3 cut(s) 133, 349, 394
BsaJI CCNNGG 2 cut(s) 225, 250
BsaWI WCCGGW 2 cut(s) 8, 311
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 225, 250
BseGI GGATG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 4 cut(s) 203, 242, 245, 410
BseXI GCAGC 5 cut(s) 36, 48, 87, 391, 413
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 5 cut(s) 83, 137, 150, 255, 335
BshNI GGYRCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 4 cut(s) 9, 312, 324, 337
BslFI GGGAC 2 cut(s) 104, 141
BsmFI GGGAC 2 cut(s) 104, 141
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 5 cut(s) 83, 137, 150, 255, 335
Bsp1286I GDGCHC 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 3 cut(s) 30, 264, 314
BspANI GGCC 5 cut(s) 83, 137, 150, 255, 335
BspEI TCCGGA 1 cut(s) 311
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 13, 151, 384
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 3 cut(s) 25, 259, 322
BspT107I GGYRCC 1 cut(s) 382
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 225, 250
BssMI GATC 3 cut(s) 30, 264, 314
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 111, 344, 364
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 3 cut(s) 133, 349, 394
BstC8I GCNNGC 4 cut(s) 85, 177, 257, 261
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 33, 267, 317
BstMBI GATC 3 cut(s) 30, 264, 314
BstMWI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 5 cut(s) 36, 48, 87, 391, 413
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 5 cut(s) 83, 137, 150, 255, 335
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 4 cut(s) 85, 177, 257, 261
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 82, 149, 254, 334
CseI GACGC 2 cut(s) 133, 168
Csp6I GTAC 5 cut(s) 184, 218, 235, 304, 340
CviAII CATG 4 cut(s) 88, 172, 270, 413
CviQI GTAC 5 cut(s) 184, 218, 235, 304, 340
DpnI GATC 3 cut(s) 32, 266, 316
DpnII GATC 3 cut(s) 30, 264, 314
DraIII CACNNNGTG 2 cut(s) 43, 199
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 2 cut(s) 23, 41
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 418
Eco72I CACGTG 3 cut(s) 133, 349, 394
EcoICRI GAGCTC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 91, 175, 273, 416
FaiI YATR 5 cut(s) 89, 173, 271, 377, 414
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 4 cut(s) 87, 171, 269, 412
FauI CCCGC 5 cut(s) 92, 118, 184, 264, 320
Fnu4HI GCNGC 6 cut(s) 25, 62, 65, 76, 402, 405
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 6 cut(s) 25, 62, 65, 76, 402, 405
FspBI CTAG 1 cut(s) 424
GlaI GCGC 1 cut(s) 74
GluI GCNGC 6 cut(s) 25, 62, 65, 76, 402, 405
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 5 cut(s) 83, 137, 150, 255, 335
HapII CCGG 4 cut(s) 9, 312, 324, 337
HgaI GACGC 2 cut(s) 133, 168
HhaI GCGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 91, 175, 273, 416
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 278, 320
HpaII CCGG 4 cut(s) 9, 312, 324, 337
Hpy166II GTNNAC 2 cut(s) 6, 352
Hpy188I TCNGA 2 cut(s) 115, 319
Hpy188III TCNNGA 2 cut(s) 205, 312
Hpy8I GTNNAC 2 cut(s) 6, 352
Hpy99I CGWCG 4 cut(s) 115, 149, 184, 278
HpyCH4III ACNGT 3 cut(s) 111, 344, 364
HpyCH4IV ACGT 6 cut(s) 132, 168, 306, 348, 354, 393
HpyCH4V TGCA 4 cut(s) 24, 159, 401, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
HpySE526I ACGT 6 cut(s) 132, 168, 306, 348, 354, 393
Hsp92II CATG 4 cut(s) 91, 175, 273, 416
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 311
Kzo9I GATC 3 cut(s) 30, 264, 314
LmnI GCTCC 4 cut(s) 11, 54, 216, 423
Lsp1109I GCAGC 5 cut(s) 36, 48, 87, 391, 413
MaeI CTAG 1 cut(s) 424
MaeII ACGT 6 cut(s) 132, 168, 306, 348, 354, 393
MaeIII GTNAC 2 cut(s) 279, 344
MalI GATC 3 cut(s) 32, 266, 316
MboI GATC 3 cut(s) 30, 264, 314
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 2 cut(s) 287, 329
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 220, 223, 224, 286
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 3 cut(s) 125, 259, 404
MspI CCGG 4 cut(s) 9, 312, 324, 337
MspR9I CCNGG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 403
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
NciI CCSGG 1 cut(s) 337
NdeII GATC 3 cut(s) 30, 264, 314
NlaIII CATG 4 cut(s) 91, 175, 273, 416
NlaIV GGNNCC 3 cut(s) 13, 151, 384
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 279, 344
NspI RCATGY 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 403
PkrI GCNGC 6 cut(s) 26, 63, 66, 77, 403, 406
PleI GAGTC 2 cut(s) 286, 328
PmaCI CACGTG 3 cut(s) 133, 349, 394
PmlI CACGTG 3 cut(s) 133, 349, 394
PpsI GAGTC 2 cut(s) 286, 328
Ppu21I YACGTR 3 cut(s) 133, 349, 394
PsiI TTATAA 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 420
PspCI CACGTG 3 cut(s) 133, 349, 394
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 13, 151, 384
PspPI GGNCC 4 cut(s) 82, 149, 254, 334
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 5 cut(s) 185, 219, 236, 305, 341
RsaNI GTAC 5 cut(s) 184, 218, 235, 304, 340
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 420
SatI GCNGC 6 cut(s) 25, 62, 65, 76, 402, 405
Sau3AI GATC 3 cut(s) 30, 264, 314
Sau96I GGNCC 4 cut(s) 82, 149, 254, 334
SchI GAGTC 2 cut(s) 287, 329
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 396
SspMI CTAG 1 cut(s) 424
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 111, 344, 364
TaiI ACGT 6 cut(s) 135, 171, 309, 351, 357, 396
TauI GCSGC 1 cut(s) 67
TseFI GTSAC 2 cut(s) 279, 344
TseI GCWGC 5 cut(s) 24, 61, 75, 401, 404
Tsp45I GTSAC 2 cut(s) 279, 344
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.