Rh6CG160400

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003608
Physical Location & Seq
Forward (+)
20881813 .. 20882834
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG160400.1

Sequence Viewer

Length: 459 bp
ATGACGACGGGAATGAGCAAATGCAACAAGCTCCGTCGCATAATCAGAATCCGTCAAATGCTACAACGCTGGCACAAGAAGGCGCACCTCAAGGCCTCACAGCTTGCGCCGTCGGACGTCCCAGCGGGACACGTCGCCGTCTGCGTGGGCAGCAGCTGCAGGAGGTTCATCGTGCGCGCTACCTACTTGAACCACCCCATCTTCAAGAAGCTTCTGGTGCAGGCCGAGGAGGAGTACGGCTTCGCCAACCAACCAGGACCTCTGGCCATCCCATGCGACGAGTCGTTCTTCGAAGAGGTTCTTCAGATGCTCTCCAGGTCGGACTCTGGTAGATCCGGGAGGTTCTTGAGCCTGGAGGATCTCCAGAGACCCTGCCATGTTGATACTTTGAACAAGCTTCAAGTTCTTGATGAATCCTGGCCTTTGCTCCACGGGAAGGCTGATAAATCAGTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.3

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 104 9.3e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccII CGCG 1 cut(s) 177
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 327, 366
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 4 cut(s) 190, 205, 391, 401
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 4 cut(s) 253, 314, 351, 416
AluBI AGCT 5 cut(s) 31, 103, 156, 211, 397
AluI AGCT 5 cut(s) 31, 103, 156, 211, 397
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 2 cut(s) 327, 366
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 4 cut(s) 93, 222, 264, 419
ApeKI GCWGC 3 cut(s) 150, 153, 156
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 4 cut(s) 85, 109, 177, 179
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 291
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 266
BbvI GCAGC 3 cut(s) 143, 162, 165
BccI CCATC 2 cut(s) 206, 275
BceAI ACGGC 3 cut(s) 94, 122, 253
BciT130I CCWGG 4 cut(s) 255, 316, 353, 418
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 361
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 3 cut(s) 151, 154, 157
BlsI GCNGC 3 cut(s) 152, 155, 158
Bme1390I CCNGG 5 cut(s) 255, 316, 337, 353, 418
Bme18I GGWCC 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 5 cut(s) 255, 316, 337, 353, 418
BmsI GCATC 1 cut(s) 297
BpmI CTGGAG 3 cut(s) 298, 347, 374
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 74, 367
BpuMI CCSGG 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 225, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 436
BseBI CCWGG 4 cut(s) 255, 316, 353, 418
BseDI CCNNGG 2 cut(s) 225, 430
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 436
BsePI GCGCGC 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 242, 245
BseXI GCAGC 3 cut(s) 143, 162, 165
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 95, 224, 266, 421
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 104, 141
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 104, 141
BsnI GGCC 4 cut(s) 95, 224, 266, 421
Bso31I GGTCTC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 332, 358
BspACI CCGC 1 cut(s) 125
BspANI GGCC 4 cut(s) 95, 224, 266, 421
BspFNI CGCG 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 327, 366
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 225, 430
BssHII GCGCGC 1 cut(s) 175
BssMI GATC 2 cut(s) 332, 358
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 255, 316, 353, 418
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 71, 105, 177, 222
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 4 cut(s) 85, 109, 177, 179
BstKTI GATC 2 cut(s) 335, 361
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 332, 358
BstMWI GCNNNNNNNGC 3 cut(s) 150, 156, 217
BstNI CCWGG 4 cut(s) 255, 316, 353, 418
BstSCI CCNGG 5 cut(s) 253, 314, 335, 351, 416
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 143, 162, 165
BstX2I RGATCY 2 cut(s) 332, 358
BstYI RGATCY 2 cut(s) 332, 358
BsuRI GGCC 4 cut(s) 95, 224, 266, 421
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 4 cut(s) 71, 105, 177, 222
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 4 cut(s) 85, 109, 177, 179
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 273, 377
CviQI GTAC 1 cut(s) 235
DpnI GATC 2 cut(s) 334, 360
DpnII GATC 2 cut(s) 332, 358
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 4 cut(s) 253, 314, 351, 416
FaeI CATG 2 cut(s) 276, 380
FaiI YATR 3 cut(s) 41, 274, 378
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 2 cut(s) 272, 376
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 151, 154, 157
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 151, 154, 157
GlaI GCGC 4 cut(s) 84, 108, 176, 178
GluI GCNGC 3 cut(s) 151, 154, 157
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 3 cut(s) 298, 347, 374
HaeIII GGCC 4 cut(s) 95, 224, 266, 421
HapII CCGG 1 cut(s) 336
HhaI GCGC 4 cut(s) 85, 109, 177, 179
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 276, 380
Hin6I GCGC 4 cut(s) 83, 107, 175, 177
HinP1I GCGC 4 cut(s) 83, 107, 175, 177
HindIII AAGCTT 2 cut(s) 209, 395
HinfI GANTC 4 cut(s) 48, 281, 323, 413
HpaII CCGG 1 cut(s) 336
Hpy188I TCNGA 4 cut(s) 47, 115, 306, 322
Hpy188III TCNNGA 4 cut(s) 205, 346, 364, 407
Hpy99I CGWCG 5 cut(s) 10, 39, 115, 137, 281
HpyAV CCTTC 2 cut(s) 73, 430
HpyCH4IV ACGT 2 cut(s) 117, 132
HpyCH4V TGCA 3 cut(s) 24, 159, 220
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 156, 217
HpySE526I ACGT 2 cut(s) 117, 132
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 276, 380
HspAI GCGC 4 cut(s) 83, 107, 175, 177
Kzo9I GATC 2 cut(s) 332, 358
LmnI GCTCC 2 cut(s) 36, 432
Lsp1109I GCAGC 3 cut(s) 143, 162, 165
LweI GCATC 1 cut(s) 297
MaeII ACGT 2 cut(s) 117, 132
MalI GATC 2 cut(s) 334, 360
MboI GATC 2 cut(s) 332, 358
MboII GAAGA 4 cut(s) 193, 280, 293, 305
MflI RGATCY 2 cut(s) 332, 358
MlsI TGGCCA 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 290, 317
MmeI TCCRAC 2 cut(s) 93, 300
MnlI CCTC 9 cut(s) 98, 106, 156, 220, 223, 270, 289, 333, 349
Mox20I TGGCCA 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 125, 156
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 5 cut(s) 255, 316, 337, 353, 418
MvaI CCWGG 4 cut(s) 255, 316, 353, 418
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 150, 156, 217
NciI CCSGG 1 cut(s) 337
NdeII GATC 2 cut(s) 332, 358
NlaIII CATG 2 cut(s) 276, 380
NmeAIII GCCGAG 1 cut(s) 250
NspV TTCGAA 1 cut(s) 291
PauI GCGCGC 1 cut(s) 175
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 48, 413
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 3 cut(s) 152, 155, 158
PleI GAGTC 2 cut(s) 289, 317
PpsI GAGTC 2 cut(s) 289, 317
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 4 cut(s) 253, 314, 351, 416
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 4 cut(s) 253, 314, 351, 416
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 332, 358
PteI GCGCGC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SatI GCNGC 3 cut(s) 151, 154, 157
Sau3AI GATC 2 cut(s) 332, 358
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 2 cut(s) 290, 317
ScrFI CCNGG 5 cut(s) 255, 316, 337, 353, 418
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 89, 346
SmoI CTYRAG 2 cut(s) 89, 346
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 5 cut(s) 253, 314, 335, 351, 416
TaiI ACGT 2 cut(s) 120, 135
TaqI TCGA 1 cut(s) 291
TfiI GAWTC 2 cut(s) 48, 413
TscAI CASTG 1 cut(s) 456
TseI GCWGC 3 cut(s) 150, 153, 156
TspDTI ATGAA 2 cut(s) 157, 426
TspGWI ACGGA 2 cut(s) 23, 41
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 297
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.