Rh6CG440600

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003608
Physical Location & Seq
Forward (+)
62022616 .. 62026562
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG440600.1

Sequence Viewer

Length: 600 bp
ATGTCAACCGGAGCCACAAAATGCAGCAAGATCCGCCACATTGTGAAGCTCCGCCAGTTGCTGCGGCGGTGGCGCTGCAAGGCCCGCATGTCGTCAGCTAGCCGCACACCGTCGGATGTCCCAGCGGGACACGTGGCGATCTGCGTCGGCCCCTACTGCACCAGATACGTCATGCCCGCGTCGTACCTGAACCACCCCGTGTTCAAGAAGCTCCTCGTACAAGCCGAGGAGGAGTACGGCTTCACTAACCAAGGCCCGCTGGCGATCCCATGCGACGAGTTACTCTTTGAAGAGGTGGTCCGGTACATTTCCAGATCGGAGTCCGGCGGGTCGGCCCGGTACTGCCACGTGGACGTGAGGAGTAACTTCGATTTCTTGGCCGATTCCCGACCGTTGCTTCGTGGCTTTTCCGAGAAAACAATCTGCTATGAAGCTACAAAGAGATGGCTGGACAATATGTTGAACCTCAGAACAATGATAATCCTCATGTCCAACTATGAATTCCAAAACCACACAGAGATTCGAAAGGGATGGTTCGAATATATCGTAGTCATGACACATGAACTGAAAGCAAAACCAGTGGGTAATTATTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

199

Amino Acids

22.98

Weight (kDa)

9.28

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 6.7e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AclWI GGATC 2 cut(s) 25, 259
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 1 cut(s) 500
AcvI CACGTG 2 cut(s) 133, 349
AdeI CACNNNGTG 2 cut(s) 43, 199
AfaI GTAC 5 cut(s) 185, 219, 236, 305, 341
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 4 cut(s) 205, 290, 463, 594
AjiI CACGTC 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 4 cut(s) 49, 98, 211, 434
AluI AGCT 4 cut(s) 49, 98, 211, 434
AlwI GGATC 2 cut(s) 25, 259
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 5 cut(s) 81, 148, 253, 333, 378
ApeKI GCWGC 3 cut(s) 24, 61, 75
ApoI RAATTY 1 cut(s) 500
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 5 cut(s) 82, 149, 254, 298, 334
AsuC2I CCSGG 1 cut(s) 337
AsuII TTCGAA 2 cut(s) 523, 537
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 298
BbrPI CACGTG 2 cut(s) 133, 349
BbvI GCAGC 3 cut(s) 36, 48, 62
BccI CCATC 2 cut(s) 438, 525
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 5 cut(s) 25, 62, 65, 76, 103
BlsI GCNGC 5 cut(s) 26, 63, 66, 77, 104
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 5 cut(s) 82, 149, 254, 298, 334
BmiI GGNNCC 2 cut(s) 13, 151
BmrFI CCNGG 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 102
Bpu14I TTCGAA 2 cut(s) 523, 537
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 133, 349
BsaJI CCNNGG 2 cut(s) 225, 250
BsaWI WCCGGW 2 cut(s) 8, 300
Bse1I ACTGG 2 cut(s) 55, 578
BseDI CCNNGG 2 cut(s) 225, 250
BseGI GGATG 2 cut(s) 121, 536
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 2 cut(s) 55, 578
BseRI GAGGAG 4 cut(s) 203, 242, 245, 373
BseXI GCAGC 3 cut(s) 36, 48, 62
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 5 cut(s) 83, 150, 255, 335, 380
BsiEI CGRYCG 1 cut(s) 392
BsiSI CCGG 4 cut(s) 9, 301, 324, 337
BslFI GGGAC 2 cut(s) 104, 141
BsmFI GGGAC 2 cut(s) 104, 141
BsnI GGCC 5 cut(s) 83, 150, 255, 335, 380
Bsp119I TTCGAA 2 cut(s) 523, 537
Bsp143I GATC 4 cut(s) 30, 138, 264, 314
BspANI GGCC 5 cut(s) 83, 150, 255, 335, 380
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 13, 151
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 2 cut(s) 25, 259
BspT104I TTCGAA 2 cut(s) 523, 537
BsrI ACTGG 2 cut(s) 55, 578
BssECI CCNNGG 2 cut(s) 225, 250
BssMI GATC 4 cut(s) 30, 138, 264, 314
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 111, 393
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 133, 349
BstBI TTCGAA 2 cut(s) 523, 537
BstC8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
BstDEI CTNAG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 121, 536
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 33, 141, 267, 317
BstMBI GATC 4 cut(s) 30, 138, 264, 314
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 335
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 36, 48, 62
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 5 cut(s) 83, 150, 255, 335, 380
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 121, 536
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
CaiI CAGNNNCTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 82, 149, 254, 298, 334
CseI GACGC 2 cut(s) 133, 168
Csp6I GTAC 5 cut(s) 184, 218, 235, 304, 340
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 6 cut(s) 88, 172, 270, 487, 553, 560
CviQI GTAC 5 cut(s) 184, 218, 235, 304, 340
DdeI CTNAG 1 cut(s) 467
DpnI GATC 4 cut(s) 32, 140, 266, 316
DpnII GATC 4 cut(s) 30, 138, 264, 314
DraIII CACNNNGTG 2 cut(s) 43, 199
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 2 cut(s) 23, 41
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 298
Eco72I CACGTG 2 cut(s) 133, 349
EcoRI GAATTC 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 6 cut(s) 91, 175, 273, 490, 556, 563
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 6 cut(s) 87, 171, 269, 486, 552, 559
FauI CCCGC 5 cut(s) 92, 118, 184, 264, 320
Fnu4HI GCNGC 5 cut(s) 25, 62, 65, 76, 103
FokI GGATG 2 cut(s) 128, 543
Fsp4HI GCNGC 5 cut(s) 25, 62, 65, 76, 103
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 74
GluI GCNGC 5 cut(s) 25, 62, 65, 76, 103
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 5 cut(s) 83, 150, 255, 335, 380
HapII CCGG 4 cut(s) 9, 301, 324, 337
HgaI GACGC 2 cut(s) 133, 168
HhaI GCGC 1 cut(s) 75
Hin1II CATG 6 cut(s) 91, 175, 273, 490, 556, 563
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 320, 383, 520
HpaII CCGG 4 cut(s) 9, 301, 324, 337
Hpy166II GTNNAC 2 cut(s) 6, 352
Hpy188I TCNGA 4 cut(s) 115, 319, 412, 470
Hpy188III TCNNGA 4 cut(s) 205, 312, 387, 553
Hpy8I GTNNAC 2 cut(s) 6, 352
Hpy99I CGWCG 4 cut(s) 115, 149, 184, 278
HpyCH4III ACNGT 2 cut(s) 111, 393
HpyCH4IV ACGT 4 cut(s) 132, 168, 348, 354
HpyCH4V TGCA 3 cut(s) 24, 78, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 4 cut(s) 132, 168, 348, 354
Hsp92II CATG 6 cut(s) 91, 175, 273, 490, 556, 563
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 30, 138, 264, 314
LmnI GCTCC 3 cut(s) 11, 54, 216
Lsp1109I GCAGC 3 cut(s) 36, 48, 62
MaeI CTAG 1 cut(s) 99
MaeII ACGT 4 cut(s) 132, 168, 348, 354
MaeIII GTNAC 2 cut(s) 279, 362
MalI GATC 4 cut(s) 32, 140, 266, 316
MboI GATC 4 cut(s) 30, 138, 264, 314
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 30
MluCI AATT 2 cut(s) 500, 586
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 93, 516
MnlI CCTC 7 cut(s) 220, 223, 224, 286, 351, 476, 494
MspA1I CMGCKG 2 cut(s) 125, 259
MspI CCGG 4 cut(s) 9, 301, 324, 337
MspR9I CCNGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
NciI CCSGG 1 cut(s) 337
NdeII GATC 4 cut(s) 30, 138, 264, 314
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 6 cut(s) 91, 175, 273, 490, 556, 563
NlaIV GGNNCC 2 cut(s) 13, 151
NmeAIII GCCGAG 1 cut(s) 250
NspI RCATGY 1 cut(s) 91
NspV TTCGAA 2 cut(s) 523, 537
PagI TCATGA 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 543
PfeI GAWTC 2 cut(s) 383, 520
PkrI GCNGC 5 cut(s) 26, 63, 66, 77, 104
PleI GAGTC 1 cut(s) 328
PmaCI CACGTG 2 cut(s) 133, 349
PmlI CACGTG 2 cut(s) 133, 349
PpsI GAGTC 1 cut(s) 328
Ppu21I YACGTR 2 cut(s) 133, 349
PspCI CACGTG 2 cut(s) 133, 349
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 13, 151
PspPI GGNCC 5 cut(s) 82, 149, 254, 298, 334
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 5 cut(s) 185, 219, 236, 305, 341
RsaNI GTAC 5 cut(s) 184, 218, 235, 304, 340
SatI GCNGC 5 cut(s) 25, 62, 65, 76, 103
Sau3AI GATC 4 cut(s) 30, 138, 264, 314
Sau96I GGNCC 5 cut(s) 82, 149, 254, 298, 334
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 337
SfuI TTCGAA 2 cut(s) 523, 537
SinI GGWCC 1 cut(s) 298
Sse9I AATT 2 cut(s) 500, 586
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 111, 393
TaiI ACGT 4 cut(s) 135, 171, 351, 357
TaqI TCGA 3 cut(s) 369, 523, 537
TasI AATT 2 cut(s) 500, 586
TauI GCSGC 2 cut(s) 67, 105
TfiI GAWTC 2 cut(s) 383, 520
TscAI CASTG 1 cut(s) 585
TseI GCWGC 3 cut(s) 24, 61, 75
TspDTI ATGAA 3 cut(s) 444, 513, 576
TspRI CASTG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 500
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.