Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8217562.1

Orthogroup ID

OG0003608

Physical Location & Seq

Genomic Coordinates Forward (+)

250 .. 708

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8217562.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtcgacgggaatgagcaaatgcaacaagctccgacgcataatcagaatccgtcaaatgctacaacgctggcacaagaaggcgcacctcaaggcctcacagcttgcgccgtcggacgtcccagcgggacacgtcgccgtctgcgtgggcagcagctgcaggaggttcatcgtgcgcgctacctacttgaaccaccccatcttcaagaagcttctggtgcaggccgaggaggagtacggcttcgccaaccaaccaggacctctggccatcccatgcgacgagtcgttcttcgaagaggttcttcagatgctctctaggtcggactctggtagatccgggaggttcttgagcctggaggatctccagagaccctgccatgttgatactttgaacaagcttcaagttctggatgaatcctggcctttgctccacgggaaggctgataaatcagtgtgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

152

Amino Acids

17.22

Weight (kDa)

9.3

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19840 AT1G75590 AT5G10990
fragaria_vesca	FvH4_2g10760 FvH4_2g38740
malus_domestica	MD00G1067200.v1.1 MD08G1015100.v1.1 MD10G1061400.v1.1 MD15G1014300.v1.1
prunus_persica	Prupe.1G368100_v2.0.a1 Prupe.8G082200_v2.0.a1
pyrus_communis	pycom05g04450 pycom08g01350 pycom10g04730 pycom15g01240
rosa_chinensis	RchiOBHm_Chr6g0268541 RchiOBHm_Chr6g0302561
rosa_laevigata	RLG00000011161 RLG00000013903
rosa_multiflora	Rmu_co8217562.1_g000002 Rmu_sc0003473.1_g000013 Rmu_sc0008287.1_g000004 Rmu_sc0009580.1_g000002 Rmu_sc0012913.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165610 Rroxscaffold_7G00199740
rosa_rugosa	Rorug06G0043000 Rorug06G0315100
rosa_samantha	Rh6AG428400 Rh6BG474300 Rh6CG160400 Rh6CG440600 Rh6DG151900
rosa_wichuraiana	Rw6G014030 Rw6G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	327, 366
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	190, 205, 391, 401
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	253, 351, 416
AluBI	AGCT	5 cut(s)	31, 103, 156, 211, 397
AluI	AGCT	5 cut(s)	31, 103, 156, 211, 397
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	327, 366
AlwNI	CAGNNNCTG	1 cut(s)	156
AoxI	GGCC	4 cut(s)	93, 222, 264, 419
ApeKI	GCWGC	3 cut(s)	150, 153, 156
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	4 cut(s)	85, 109, 177, 179
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	143, 162, 165
BccI	CCATC	2 cut(s)	206, 275
BceAI	ACGGC	3 cut(s)	94, 122, 253
BciT130I	CCWGG	3 cut(s)	255, 353, 418
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	3 cut(s)	151, 154, 157
BlsI	GCNGC	3 cut(s)	152, 155, 158
Bme1390I	CCNGG	4 cut(s)	255, 337, 353, 418
Bme18I	GGWCC	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	4 cut(s)	255, 337, 353, 418
BmsI	GCATC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	347, 374
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	74, 367
BpuMI	CCSGG	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	225, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
BseBI	CCWGG	3 cut(s)	255, 353, 418
BseDI	CCNNGG	2 cut(s)	225, 430
BseGI	GGATG	2 cut(s)	267, 415
BseLI	CCNNNNNNNGG	1 cut(s)	436
BsePI	GCGCGC	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	242, 245
BseXI	GCAGC	3 cut(s)	143, 162, 165
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	95, 224, 266, 421
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	104, 141
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	2 cut(s)	104, 141
BsnI	GGCC	4 cut(s)	95, 224, 266, 421
Bso31I	GGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	332, 358
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	4 cut(s)	95, 224, 266, 421
BspFNI	CGCG	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	327, 366
BspT104I	TTCGAA	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	225, 430
BssHII	GCGCGC	1 cut(s)	175
BssMI	GATC	2 cut(s)	332, 358
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	255, 353, 418
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	71, 105, 177, 222
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	267, 415
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	4 cut(s)	85, 109, 177, 179
BstKTI	GATC	2 cut(s)	335, 361
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	332, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 156, 217
BstNI	CCWGG	3 cut(s)	255, 353, 418
BstSCI	CCNGG	4 cut(s)	253, 335, 351, 416
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	143, 162, 165
BstX2I	RGATCY	2 cut(s)	332, 358
BstYI	RGATCY	2 cut(s)	332, 358
BsuRI	GGCC	4 cut(s)	95, 224, 266, 421
BtgI	CCRYGG	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	267, 415
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	4 cut(s)	71, 105, 177, 222
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	4 cut(s)	85, 109, 177, 179
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	273, 377
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	334, 360
DpnII	GATC	2 cut(s)	332, 358
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	253, 351, 416
FaeI	CATG	2 cut(s)	276, 380
FaiI	YATR	3 cut(s)	41, 274, 378
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	2 cut(s)	104, 141
FatI	CATG	2 cut(s)	272, 376
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	151, 154, 157
FokI	GGATG	2 cut(s)	254, 422
Fsp4HI	GCNGC	3 cut(s)	151, 154, 157
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	4 cut(s)	84, 108, 176, 178
GluI	GCNGC	3 cut(s)	151, 154, 157
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	2 cut(s)	347, 374
HaeIII	GGCC	4 cut(s)	95, 224, 266, 421
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	4 cut(s)	85, 109, 177, 179
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	276, 380
Hin6I	GCGC	4 cut(s)	83, 107, 175, 177
HinP1I	GCGC	4 cut(s)	83, 107, 175, 177
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	209, 395
HinfI	GANTC	4 cut(s)	48, 281, 323, 413
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	35, 47, 115, 306, 322
Hpy188III	TCNNGA	4 cut(s)	205, 346, 364, 407
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	5 cut(s)	10, 39, 115, 137, 281
HpyAV	CCTTC	2 cut(s)	73, 430
HpyCH4IV	ACGT	2 cut(s)	117, 132
HpyCH4V	TGCA	3 cut(s)	24, 159, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 156, 217
HpySE526I	ACGT	2 cut(s)	117, 132
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	276, 380
HspAI	GCGC	4 cut(s)	83, 107, 175, 177
Kzo9I	GATC	2 cut(s)	332, 358
LmnI	GCTCC	2 cut(s)	36, 432
Lsp1109I	GCAGC	3 cut(s)	143, 162, 165
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	117, 132
MalI	GATC	2 cut(s)	334, 360
MboI	GATC	2 cut(s)	332, 358
MboII	GAAGA	4 cut(s)	193, 280, 293, 305
MflI	RGATCY	2 cut(s)	332, 358
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	290, 317
MmeI	TCCRAC	3 cut(s)	58, 93, 300
MnlI	CCTC	9 cut(s)	98, 106, 156, 220, 223, 270, 289, 333, 349
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	125, 156
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	4 cut(s)	255, 337, 353, 418
MvaI	CCWGG	3 cut(s)	255, 353, 418
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	150, 156, 217
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	332, 358
NlaIII	CATG	2 cut(s)	276, 380
NmeAIII	GCCGAG	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	291
PauI	GCGCGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	48, 413
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	152, 155, 158
PleI	GAGTC	2 cut(s)	289, 317
PpsI	GAGTC	2 cut(s)	289, 317
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	253, 351, 416
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	3 cut(s)	253, 351, 416
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	332, 358
PteI	GCGCGC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	151, 154, 157
Sau3AI	GATC	2 cut(s)	332, 358
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	290, 317
ScrFI	CCNGG	4 cut(s)	255, 337, 353, 418
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	89, 346
SmoI	CTYRAG	2 cut(s)	89, 346
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	4 cut(s)	253, 335, 351, 416
TaiI	ACGT	2 cut(s)	120, 135
TaqI	TCGA	2 cut(s)	5, 291
TfiI	GAWTC	2 cut(s)	48, 413
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	3 cut(s)	150, 153, 156
TspDTI	ATGAA	2 cut(s)	157, 426
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.