RchiOBHm_Chr6g0302561

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003608
Physical Location & Seq
Forward (+)
62632405 .. 62633296
892 bp
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UTR
Exon/CDS
Intron
PRQ27178

Sequence Viewer

Length: 429 bp
ATGTCAACCGGAGCCACAAAATGCAGCAAGATCCGCCACATTGTGAAGCTCCGCCAGTTGCTGCGGCGGTGGCGCTGCAAGGCCCGCATGTCGTCAGCTAGCCGCACACCGTCGGATGTCCCAGCGGGACACGTGGCGATCTGCGTCGGCCCCTACTGCACCAGATACGTCATGCCCGCGTCGTACCTTAACCACCCCGTGTTCAAGAAGCTCCTCGTACAAGCCGAGGAGGAGTACGGCTTCACTAACCAAGGCCCGCTGGCGATCCCATGCGACGAGTCACTCTTTGAAGAGGTGGTCCGGTACATTTCCGGATCGGAGTCCGGCGGGTCGGCCCGGTACTGCCACGTGGACGTGAGGAGTAACTTCGATTTCTTGGCCGATTCCCGACCGTTGCTTCGTGGCTTTTCCGAGAAAACAATCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

142

Amino Acids

16.0

Weight (kDa)

9.28

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 1.4e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 311
AclWI GGATC 3 cut(s) 25, 259, 322
AcoI YGGCCR 1 cut(s) 378
AcvI CACGTG 2 cut(s) 133, 349
AdeI CACNNNGTG 2 cut(s) 43, 199
AfaI GTAC 5 cut(s) 185, 219, 236, 305, 341
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 205, 290
AjiI CACGTC 1 cut(s) 355
AluBI AGCT 3 cut(s) 49, 98, 211
AluI AGCT 3 cut(s) 49, 98, 211
AlwI GGATC 3 cut(s) 25, 259, 322
AlwNI CAGNNNCTG 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 5 cut(s) 81, 148, 253, 333, 378
ApeKI GCWGC 3 cut(s) 24, 61, 75
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 5 cut(s) 82, 149, 254, 298, 334
AsuC2I CCSGG 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 298
BbrPI CACGTG 2 cut(s) 133, 349
BbvI GCAGC 3 cut(s) 36, 48, 62
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 5 cut(s) 25, 62, 65, 76, 103
BlsI GCNGC 5 cut(s) 26, 63, 66, 77, 104
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 5 cut(s) 82, 149, 254, 298, 334
BmiI GGNNCC 2 cut(s) 13, 151
BmrFI CCNGG 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 133, 349
BsaJI CCNNGG 2 cut(s) 225, 250
BsaWI WCCGGW 3 cut(s) 8, 300, 311
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 225, 250
BseGI GGATG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 4 cut(s) 203, 242, 245, 373
BseXI GCAGC 3 cut(s) 36, 48, 62
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 5 cut(s) 83, 150, 255, 335, 380
BsiEI CGRYCG 1 cut(s) 392
BsiSI CCGG 5 cut(s) 9, 301, 312, 324, 337
BslFI GGGAC 2 cut(s) 104, 141
BsmFI GGGAC 2 cut(s) 104, 141
BsnI GGCC 5 cut(s) 83, 150, 255, 335, 380
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 4 cut(s) 30, 138, 264, 314
BspANI GGCC 5 cut(s) 83, 150, 255, 335, 380
BspEI TCCGGA 1 cut(s) 311
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 13, 151
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 3 cut(s) 25, 259, 322
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 225, 250
BssMI GATC 4 cut(s) 30, 138, 264, 314
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 111, 393
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 133, 349
BstC8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 33, 141, 267, 317
BstMBI GATC 4 cut(s) 30, 138, 264, 314
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 335
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 36, 48, 62
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 5 cut(s) 83, 150, 255, 335, 380
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 82, 149, 254, 298, 334
CseI GACGC 2 cut(s) 133, 168
Csp6I GTAC 5 cut(s) 184, 218, 235, 304, 340
CviAII CATG 3 cut(s) 88, 172, 270
CviQI GTAC 5 cut(s) 184, 218, 235, 304, 340
DpnI GATC 4 cut(s) 32, 140, 266, 316
DpnII GATC 4 cut(s) 30, 138, 264, 314
DraIII CACNNNGTG 2 cut(s) 43, 199
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 2 cut(s) 23, 41
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 298
Eco72I CACGTG 2 cut(s) 133, 349
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 91, 175, 273
FaiI YATR 3 cut(s) 89, 173, 271
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 3 cut(s) 87, 171, 269
FauI CCCGC 5 cut(s) 92, 118, 184, 264, 320
Fnu4HI GCNGC 5 cut(s) 25, 62, 65, 76, 103
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 25, 62, 65, 76, 103
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 74
GluI GCNGC 5 cut(s) 25, 62, 65, 76, 103
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 5 cut(s) 83, 150, 255, 335, 380
HapII CCGG 5 cut(s) 9, 301, 312, 324, 337
HgaI GACGC 2 cut(s) 133, 168
HhaI GCGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 91, 175, 273
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 278, 320, 383
HpaII CCGG 5 cut(s) 9, 301, 312, 324, 337
Hpy166II GTNNAC 2 cut(s) 6, 352
Hpy188I TCNGA 3 cut(s) 115, 319, 412
Hpy188III TCNNGA 3 cut(s) 205, 312, 387
Hpy8I GTNNAC 2 cut(s) 6, 352
Hpy99I CGWCG 4 cut(s) 115, 149, 184, 278
HpyCH4III ACNGT 2 cut(s) 111, 393
HpyCH4IV ACGT 4 cut(s) 132, 168, 348, 354
HpyCH4V TGCA 3 cut(s) 24, 78, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
HpySE526I ACGT 4 cut(s) 132, 168, 348, 354
Hsp92II CATG 3 cut(s) 91, 175, 273
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 311
Kzo9I GATC 4 cut(s) 30, 138, 264, 314
LmnI GCTCC 3 cut(s) 11, 54, 216
Lsp1109I GCAGC 3 cut(s) 36, 48, 62
MaeI CTAG 1 cut(s) 99
MaeII ACGT 4 cut(s) 132, 168, 348, 354
MaeIII GTNAC 2 cut(s) 279, 362
MalI GATC 4 cut(s) 32, 140, 266, 316
MboI GATC 4 cut(s) 30, 138, 264, 314
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 30
MlyI GAGTC 2 cut(s) 287, 329
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 220, 223, 224, 286, 351
MroI TCCGGA 1 cut(s) 311
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 2 cut(s) 125, 259
MspI CCGG 5 cut(s) 9, 301, 312, 324, 337
MspR9I CCNGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
NciI CCSGG 1 cut(s) 337
NdeII GATC 4 cut(s) 30, 138, 264, 314
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 91, 175, 273
NlaIV GGNNCC 2 cut(s) 13, 151
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 279
NspI RCATGY 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 5 cut(s) 26, 63, 66, 77, 104
PleI GAGTC 2 cut(s) 286, 328
PmaCI CACGTG 2 cut(s) 133, 349
PmlI CACGTG 2 cut(s) 133, 349
PpsI GAGTC 2 cut(s) 286, 328
Ppu21I YACGTR 2 cut(s) 133, 349
PspCI CACGTG 2 cut(s) 133, 349
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 13, 151
PspPI GGNCC 5 cut(s) 82, 149, 254, 298, 334
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 5 cut(s) 185, 219, 236, 305, 341
RsaNI GTAC 5 cut(s) 184, 218, 235, 304, 340
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 5 cut(s) 25, 62, 65, 76, 103
Sau3AI GATC 4 cut(s) 30, 138, 264, 314
Sau96I GGNCC 5 cut(s) 82, 149, 254, 298, 334
SchI GAGTC 2 cut(s) 287, 329
ScrFI CCNGG 1 cut(s) 337
SetI ASST 9 cut(s) 51, 100, 135, 171, 189, 213, 297, 351, 357
SinI GGWCC 1 cut(s) 298
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 111, 393
TaiI ACGT 4 cut(s) 135, 171, 351, 357
TaqI TCGA 1 cut(s) 369
TauI GCSGC 2 cut(s) 67, 105
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 24, 61, 75
Tsp45I GTSAC 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.