AT1G75590

Auxin-responsive family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003608
Physical Location & Seq
Reverse (-)
28382813 .. 28383769
957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75590.1

Sequence Viewer

Length: 465 bp
ATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACATTGTGAGGCTAAGGCAAATGCTTCGACGGTGGCGCGATCAAGCGAGGATGTCTTCTTCTTTCAGCCGTTGTGTACCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCAGTTGTAGGAGATTTGTGGTGCGCGCGACGTATCTGAACCATCCTGTCCTAAGGAACCTTCTTGTTCAAGCTGAGGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCGGTTTTCGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCAAGACGGTTTACTTGTCCCGATGATTTTCAGAAGAATTGCCACGTGGTGGGAATCAGAAGCAAGCTTGATCTATGGATCGAATCTCGACCGTTACTTCACGGCGTTACTGAAAAAGCCGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

154

Amino Acids

17.68

Weight (kDa)

9.8

Isoelectric Point (pI)

80.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 104 2e-30 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 385
AccI GTMKAC 1 cut(s) 147
AccII CGCG 3 cut(s) 75, 183, 185
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 25, 422
AcvI CACGTG 2 cut(s) 139, 382
AdeI CACNNNGTG 2 cut(s) 43, 385
AfaI GTAC 2 cut(s) 114, 126
AfiI CCNNNNNNNGG 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 230, 403
AluI AGCT 2 cut(s) 230, 403
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 2 cut(s) 25, 422
Ama87I CYCGRG 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 3 cut(s) 75, 183, 185
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 2 cut(s) 319, 334
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 209
BbrPI CACGTG 2 cut(s) 139, 382
BbsI GAAGAC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 207
BceAI ACGGC 3 cut(s) 90, 440, 454
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcnI CCSGG 2 cut(s) 319, 334
BcoDI GTCTC 1 cut(s) 17
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 319, 334
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 319, 334
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 50, 231
BpuMI CCSGG 2 cut(s) 319, 334
Bsa29I ATCGAT 1 cut(s) 302
BsaAI YACGTR 3 cut(s) 139, 151, 382
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse21I CCTNAGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 3 cut(s) 93, 127, 199
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 222
BsePI GCGCGC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 3 cut(s) 75, 183, 185
Bsh1285I CGRYCG 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 319, 334
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 339
Bso31I GGTCTC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 4 cut(s) 30, 76, 406, 414
BspACI CCGC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 3 cut(s) 75, 183, 185
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 2 cut(s) 25, 422
BspTNI GGTCTC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 256
BssHII GCGCGC 1 cut(s) 181
BssMI GATC 4 cut(s) 30, 76, 406, 414
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 5 cut(s) 69, 117, 129, 345, 429
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 3 cut(s) 139, 151, 382
BstC8I GCNNGC 2 cut(s) 183, 401
BstDEI CTNAG 3 cut(s) 50, 209, 231
BstF5I GGATG 3 cut(s) 93, 127, 199
BstFNI CGCG 3 cut(s) 75, 183, 185
BstHHI GCGC 3 cut(s) 75, 183, 185
BstKTI GATC 4 cut(s) 33, 79, 409, 417
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 30, 76, 406, 414
BstMCI CGRYCG 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 317, 332
BstSNI TACGTA 1 cut(s) 151
BstUI CGCG 3 cut(s) 75, 183, 185
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 302
Bsu36I CCTNAGG 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 3 cut(s) 93, 127, 199
Cac8I GCNNGC 2 cut(s) 183, 401
CfoI GCGC 3 cut(s) 75, 183, 185
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 302
Csp6I GTAC 2 cut(s) 113, 125
CviJI RGCY 6 cut(s) 5, 49, 105, 230, 403, 455
CviKI_1 RGCY 6 cut(s) 5, 49, 105, 230, 403, 455
CviQI GTAC 2 cut(s) 113, 125
DdeI CTNAG 3 cut(s) 50, 209, 231
DpnI GATC 4 cut(s) 32, 78, 408, 416
DpnII GATC 4 cut(s) 30, 76, 406, 414
DraIII CACNNNGTG 2 cut(s) 43, 385
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco105I TACGTA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 260
Eco72I CACGTG 2 cut(s) 139, 382
Eco81I CCTNAGG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaiI YATR 2 cut(s) 314, 412
FaqI GGGAC 1 cut(s) 339
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 3 cut(s) 100, 134, 186
Fsp4HI GCNGC 1 cut(s) 25
GlaI GCGC 3 cut(s) 74, 182, 184
GluI GCNGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 27
HapII CCGG 2 cut(s) 319, 334
HhaI GCGC 3 cut(s) 75, 183, 185
Hin6I GCGC 3 cut(s) 73, 181, 183
HinP1I GCGC 3 cut(s) 73, 181, 183
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 6 cut(s) 284, 299, 304, 326, 390, 419
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 2 cut(s) 319, 334
Hpy166II GTNNAC 4 cut(s) 113, 148, 253, 348
Hpy188I TCNGA 5 cut(s) 121, 195, 325, 369, 395
Hpy188III TCNNGA 5 cut(s) 16, 132, 339, 356, 423
Hpy8I GTNNAC 4 cut(s) 113, 148, 253, 348
Hpy99I CGWCG 3 cut(s) 69, 121, 190
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 5 cut(s) 69, 117, 129, 345, 429
HpyCH4IV ACGT 4 cut(s) 138, 150, 188, 381
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 3 cut(s) 50, 209, 231
HpySE526I ACGT 4 cut(s) 138, 150, 188, 381
HspAI GCGC 3 cut(s) 73, 181, 183
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 4 cut(s) 30, 76, 406, 414
LpnPI CCDG 4 cut(s) 117, 216, 332, 347
Lsp1109I GCAGC 1 cut(s) 36
MaeII ACGT 4 cut(s) 138, 150, 188, 381
MaeIII GTNAC 3 cut(s) 35, 429, 442
MalI GATC 4 cut(s) 32, 78, 408, 416
MboI GATC 4 cut(s) 30, 76, 406, 414
MboII GAAGA 5 cut(s) 84, 87, 248, 293, 382
MflI RGATCY 1 cut(s) 30
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 39, 78, 226, 289
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 1 cut(s) 252
MspI CCGG 2 cut(s) 319, 334
MspR9I CCNGG 2 cut(s) 319, 334
MvnI CGCG 3 cut(s) 75, 183, 185
NciI CCSGG 2 cut(s) 319, 334
NdeII GATC 4 cut(s) 30, 76, 406, 414
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 35
PauI GCGCGC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 6 cut(s) 284, 299, 304, 326, 390, 419
PflFI GACNNNGTC 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 385
PkrI GCNGC 1 cut(s) 26
PmaCI CACGTG 2 cut(s) 139, 382
PmlI CACGTG 2 cut(s) 139, 382
Ppu21I YACGTR 3 cut(s) 139, 151, 382
PspCI CACGTG 2 cut(s) 139, 382
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 30
PsyI GACNNNGTC 1 cut(s) 334
PteI GCGCGC 1 cut(s) 181
RsaI GTAC 2 cut(s) 114, 126
RsaNI GTAC 2 cut(s) 113, 125
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 4 cut(s) 30, 76, 406, 414
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 319, 334
SetI ASST 9 cut(s) 13, 141, 153, 191, 219, 232, 262, 384, 405
SinI GGWCC 1 cut(s) 260
SnaBI TACGTA 1 cut(s) 151
Sse9I AATT 1 cut(s) 373
SsiI CCGC 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 317, 332
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 5 cut(s) 69, 117, 129, 345, 429
TaiI ACGT 4 cut(s) 141, 153, 191, 384
TaqI TCGA 6 cut(s) 64, 294, 302, 329, 417, 424
TasI AATT 1 cut(s) 373
TfiI GAWTC 6 cut(s) 284, 299, 304, 326, 390, 419
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 35
TspGWI ACGGA 2 cut(s) 23, 252
Tth111I GACNNNGTC 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.