Rh6BG474300

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003608
Physical Location & Seq
Reverse (-)
68101783 .. 68102878
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG474300.1

Sequence Viewer

Length: 429 bp
ATGTCAACCGGAGCCGCAAAATGCAGCAAGATCCGCCACATTGTGAAGCTCCGCCAGTTGCTGCGGCGGTGGCGCAGCAAGGCCCGCATGTCGTCTGCTAGCCGCACACCGTCGGATGTCCCAGAGGGACACGTGGCGATCTGCGTCGGCCCCTACTGCACCAGATACGTCATGCCCGCGTCGTACCTGAACCACCCCGTGTTCAAGAAGCTCCTCGTACAAGCGGAGGAGGAGTACGGCTTCACTAACCAAGGCCCGCTGGCGATCCCATGCGACGAGTCACTCTTTGAAGAGGTGGTCCGGTACATTTCCCGATCGGAGTCCGGCGGGTCGGCCCGGTACTGCCACGTGGATGTCCGGAATAACTTCGATTTCTTGGCCGATTCCCGACCGTTGCTTCGTGGCTTTTCCGAGAAAACAATCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

9.37

Isoelectric Point (pI)

64.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 2.8e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 357
AclWI GGATC 2 cut(s) 25, 259
AcoI YGGCCR 1 cut(s) 378
AcvI CACGTG 2 cut(s) 133, 349
AdeI CACNNNGTG 2 cut(s) 43, 199
AfaI GTAC 5 cut(s) 185, 219, 236, 305, 341
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 205, 290
AluBI AGCT 2 cut(s) 49, 211
AluI AGCT 2 cut(s) 49, 211
AlwI GGATC 2 cut(s) 25, 259
AlwNI CAGNNNCTG 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 5 cut(s) 81, 148, 253, 333, 378
ApeKI GCWGC 3 cut(s) 24, 61, 75
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 5 cut(s) 82, 149, 254, 298, 334
AsuC2I CCSGG 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 298
BbrPI CACGTG 2 cut(s) 133, 349
BbvI GCAGC 3 cut(s) 36, 48, 87
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 99
BisI GCNGC 6 cut(s) 15, 25, 62, 65, 76, 103
BlsI GCNGC 6 cut(s) 16, 26, 63, 66, 77, 104
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 5 cut(s) 82, 149, 254, 298, 334
BmiI GGNNCC 2 cut(s) 13, 151
BmrFI CCNGG 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 133, 349
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 3 cut(s) 8, 300, 357
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 121, 358
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 3 cut(s) 203, 242, 245
BseXI GCAGC 3 cut(s) 36, 48, 87
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 2 cut(s) 317, 392
BshFI GGCC 5 cut(s) 83, 150, 255, 335, 380
BsiEI CGRYCG 2 cut(s) 317, 392
BsiSI CCGG 5 cut(s) 9, 301, 324, 337, 358
BslFI GGGAC 2 cut(s) 104, 141
BsmFI GGGAC 2 cut(s) 104, 141
BsnI GGCC 5 cut(s) 83, 150, 255, 335, 380
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 30, 138, 264, 314
BspANI GGCC 5 cut(s) 83, 150, 255, 335, 380
BspEI TCCGGA 1 cut(s) 357
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 13, 151
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 2 cut(s) 25, 259
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 4 cut(s) 30, 138, 264, 314
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 111, 393
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 133, 349
BstC8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
BstF5I GGATG 2 cut(s) 121, 358
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 33, 141, 267, 317
BstMBI GATC 4 cut(s) 30, 138, 264, 314
BstMCI CGRYCG 2 cut(s) 317, 392
BstMWI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 335
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 36, 48, 87
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 5 cut(s) 83, 150, 255, 335, 380
BtsCI GGATG 2 cut(s) 121, 358
Cac8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 82, 149, 254, 298, 334
CseI GACGC 2 cut(s) 133, 168
Csp6I GTAC 5 cut(s) 184, 218, 235, 304, 340
CviAII CATG 3 cut(s) 88, 172, 270
CviQI GTAC 5 cut(s) 184, 218, 235, 304, 340
DpnI GATC 4 cut(s) 32, 140, 266, 316
DpnII GATC 4 cut(s) 30, 138, 264, 314
DraIII CACNNNGTG 2 cut(s) 43, 199
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 2 cut(s) 23, 41
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 298
Eco72I CACGTG 2 cut(s) 133, 349
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 91, 175, 273
FaiI YATR 3 cut(s) 89, 173, 271
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 3 cut(s) 87, 171, 269
FauI CCCGC 4 cut(s) 92, 184, 264, 320
Fnu4HI GCNGC 6 cut(s) 15, 25, 62, 65, 76, 103
FokI GGATG 2 cut(s) 128, 365
Fsp4HI GCNGC 6 cut(s) 15, 25, 62, 65, 76, 103
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 74
GluI GCNGC 6 cut(s) 15, 25, 62, 65, 76, 103
HaeIII GGCC 5 cut(s) 83, 150, 255, 335, 380
HapII CCGG 5 cut(s) 9, 301, 324, 337, 358
HgaI GACGC 2 cut(s) 133, 168
HhaI GCGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 91, 175, 273
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 278, 320, 383
HpaII CCGG 5 cut(s) 9, 301, 324, 337, 358
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 115, 319, 412
Hpy188III TCNNGA 4 cut(s) 205, 312, 358, 387
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 4 cut(s) 115, 149, 184, 278
HpyCH4III ACNGT 2 cut(s) 111, 393
HpyCH4IV ACGT 3 cut(s) 132, 168, 348
HpyCH4V TGCA 2 cut(s) 24, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
HpySE526I ACGT 3 cut(s) 132, 168, 348
Hsp92II CATG 3 cut(s) 91, 175, 273
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 357
Kzo9I GATC 4 cut(s) 30, 138, 264, 314
LmnI GCTCC 3 cut(s) 11, 54, 216
Lsp1109I GCAGC 3 cut(s) 36, 48, 87
MaeI CTAG 1 cut(s) 99
MaeII ACGT 3 cut(s) 132, 168, 348
MaeIII GTNAC 1 cut(s) 279
MalI GATC 4 cut(s) 32, 140, 266, 316
MboI GATC 4 cut(s) 30, 138, 264, 314
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 30
MlyI GAGTC 2 cut(s) 287, 329
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 118, 220, 223, 224, 286
MroI TCCGGA 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 5 cut(s) 9, 301, 324, 337, 358
MspR9I CCNGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
NciI CCSGG 1 cut(s) 337
NdeII GATC 4 cut(s) 30, 138, 264, 314
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 91, 175, 273
NlaIV GGNNCC 2 cut(s) 13, 151
NmuCI GTSAC 1 cut(s) 279
NspI RCATGY 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 6 cut(s) 16, 26, 63, 66, 77, 104
Ple19I CGATCG 1 cut(s) 317
PleI GAGTC 2 cut(s) 286, 328
PmaCI CACGTG 2 cut(s) 133, 349
PmlI CACGTG 2 cut(s) 133, 349
PpsI GAGTC 2 cut(s) 286, 328
Ppu21I YACGTR 2 cut(s) 133, 349
PspCI CACGTG 2 cut(s) 133, 349
PspN4I GGNNCC 2 cut(s) 13, 151
PspPI GGNCC 5 cut(s) 82, 149, 254, 298, 334
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 30
PvuI CGATCG 1 cut(s) 317
RsaI GTAC 5 cut(s) 185, 219, 236, 305, 341
RsaNI GTAC 5 cut(s) 184, 218, 235, 304, 340
RseI CAYNNNNRTG 1 cut(s) 351
SatI GCNGC 6 cut(s) 15, 25, 62, 65, 76, 103
Sau3AI GATC 4 cut(s) 30, 138, 264, 314
Sau96I GGNCC 5 cut(s) 82, 149, 254, 298, 334
SchI GAGTC 2 cut(s) 287, 329
ScrFI CCNGG 1 cut(s) 337
SetI ASST 7 cut(s) 51, 135, 171, 189, 213, 297, 351
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 351
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 111, 393
TaiI ACGT 3 cut(s) 135, 171, 351
TaqI TCGA 1 cut(s) 369
TauI GCSGC 3 cut(s) 17, 67, 105
TfiI GAWTC 1 cut(s) 383
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 24, 61, 75
Tsp45I GTSAC 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.