Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003608

Physical Location & Seq

Genomic Coordinates Reverse (-)

5484848 .. 5530161

Gene Structure 45314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGAGGAATGAGGAAGTCGCGGCGGGACTGAGCCTCAGAGGGAGTCTCGGCTGCTACGGGAGTGATTCTCACTTCTCAAATAGTCAGACGTGGTCTTGGCAAAGGGAACGTCTCCGGCTTAATATCAGCACATTTGTGGACAAAATCGAAGTGATACGCTCAAGAATGTATCTTCTGCTAGTTGGTAGCGGAAAATTAGAAAGTTTGCGTCTGGAGCAAACAGAACCACCCAAGTCCCGTTTGAAAGTGGAGATGGAGTTGGACAGAATCAGCAACTTACCAAGTGATGTTATAGATAAAATTCTGTCATGTTTGACTCTTAAGGAGGCAGTGAGGACAAGTGTATTTTCGAGCAGGTGGAGGGACAAATGGGCTATGCTTTCGGGTCTTGTATTTGATCGGGAGTGTGTCTCGACTCAGAACCGTGAACTTTTTGTGAACATTGTTGATCATGTACTCTTAAGTCACATTGTCCCCATACACAAGTTCGTGCTTTCTCGCACACATCTTATACCTTTTAGAGATATTGATCGATGGGTTCTTCATCTATCAAGAAACTCTATTAAAGTTTTCAAACTTCATATTCCTTATTGGCCTGCAAAATACAAGATGCCATTATGTTTCTTTTCTTATCAAGATATGATTGAGCTGAAGTTATCTGACTGCGTGCTGAAACCTCCAACCACATTCAAAGGCTTCAGAACTTTGAAGAGGGTTAATTTTAGGAGTGTTACCTTGGCCCAAGATGTGTTGGAAAATCTGATTCTTTGCTGTTCTCTGCTAGAGAGTTTGAAAATGAGAAACTGTGATGGCTTTACCCATCTCAAGATTGATGCACCAAATCTTCGATTCCTTTCTTTCGCTGGTGGATTGGAAGATGTTAGTCTTCAGAATACCATAAATCTTGCTGTTCTTCACTTTAATTCGTGGGGCATTTATCACAGACAAGATCGTGTCTGTTCTTCCAATTTGGCAAAATTTTTCGTTGACCTCCCTCATATTCAGAGGCTCACAATTGATGGTGAGGCTGTACAGTATTTGGCTGTCGGTGGCTTGCCTGGAAAGCTCCCCAAACCATGTCTAGATCTAAATTTTCTTTCTCTCCTCTTATACTTTAATGATCTTGCTGAAATCTTAACTACTCTATATCTTCTGAGAAGCTCCCCTGCTCTGGAAGAACTAGATGTTACGGTCCGCCATAAAGAACTGGAGATTGCTGTTGATGAAGAAGCAAACTCTTGGTTGGATAACCTAGATGATGACATAAATTGCTTGTTCCCCAAACTGCGACTTGTTGCAATAACCGACTTTTCTGGTTGCGAAGCTGAACTAGATTTCATCAGACTTTTGCTTCTAAATTCACCCGTGCTTGAGACGATGACTATTAGGGGTCTTTCTGAACATGGTTCTTCAGAAGTTTTAAAGAAGTTGCTCCAGTTAAGGCGTACCTCAAGTGCGGAGATTATATACTTGGATCTCTTTGATCCCTGGGAGCTCTTTCTATCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

503

Amino Acids

57.81

Weight (kDa)

6.38

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	90 - 127	4.9e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	173 - 277	2.5e-12	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	176 - 396	4.1e-13	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	422 - 462	1.1e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19840 AT1G75590 AT5G10990
fragaria_vesca	FvH4_2g10760 FvH4_2g38740
malus_domestica	MD00G1067200.v1.1 MD08G1015100.v1.1 MD10G1061400.v1.1 MD15G1014300.v1.1
prunus_persica	Prupe.1G368100_v2.0.a1 Prupe.8G082200_v2.0.a1
pyrus_communis	pycom05g04450 pycom08g01350 pycom10g04730 pycom15g01240
rosa_chinensis	RchiOBHm_Chr6g0268541 RchiOBHm_Chr6g0302561
rosa_laevigata	RLG00000011161 RLG00000013903
rosa_multiflora	Rmu_co8217562.1_g000002 Rmu_sc0003473.1_g000013 Rmu_sc0008287.1_g000004 Rmu_sc0009580.1_g000002 Rmu_sc0012913.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165610 Rroxscaffold_7G00199740
rosa_rugosa	Rorug06G0043000 Rorug06G0315100
rosa_samantha	Rh6AG428400 Rh6BG474300 Rh6CG160400 Rh6CG440600 Rh6DG151900
rosa_wichuraiana	Rw6G014030 Rw6G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	345
AccII	CGCG	1 cut(s)	20
AciI	CCGC	5 cut(s)	20, 23, 189, 1195, 1457
AclWI	GGATC	2 cut(s)	1478, 1482
AcsI	RAATTY	4 cut(s)	300, 977, 1090, 1357
AcuI	CTGAAG	4 cut(s)	671, 682, 872, 1395
AfaI	GTAC	3 cut(s)	456, 1032, 1447
AfiI	CCNNNNNNNGG	1 cut(s)	1171
AflII	CTTAAG	2 cut(s)	320, 460
AgsI	TTSAA	5 cut(s)	244, 574, 691, 709, 793
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	2 cut(s)	1057, 1487
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	5 cut(s)	649, 1066, 1161, 1325, 1495
AluI	AGCT	5 cut(s)	649, 1066, 1161, 1325, 1495
Alw21I	GWGCWC	1 cut(s)	1497
Alw26I	GTCTC	4 cut(s)	50, 116, 415, 1367
AlwI	GGATC	2 cut(s)	1478, 1482
AoxI	GGCC	2 cut(s)	593, 738
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	4 cut(s)	300, 977, 1090, 1357
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	2 cut(s)	739, 1192
AsuHPI	GGTGA	2 cut(s)	1034, 1353
AvaII	GGWCC	1 cut(s)	1192
BanII	GRGCYC	1 cut(s)	1497
BbsI	GAAGAC	1 cut(s)	878
Bbv12I	GWGCWC	1 cut(s)	1497
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	5 cut(s)	247, 528, 803, 828, 1013
BciT130I	CCWGG	2 cut(s)	1059, 1489
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	4 cut(s)	50, 116, 415, 1367
BfaI	CTAG	6 cut(s)	179, 782, 1082, 1181, 1253, 1331
BfrI	CTTAAG	2 cut(s)	320, 460
BfuAI	ACCTGC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	1084
BisI	GCNGC	2 cut(s)	21, 52
BlsI	GCNGC	2 cut(s)	22, 53
Bme1390I	CCNGG	2 cut(s)	1059, 1489
Bme18I	GGWCC	1 cut(s)	1192
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	739, 1192
BmrFI	CCNGG	2 cut(s)	1059, 1489
BmsI	GCATC	2 cut(s)	600, 823
BpiI	GAAGAC	1 cut(s)	878
BplI	GAGNNNNNCTC	6 cut(s)	30, 62, 52, 84, 395, 427
BpmI	CTGGAG	3 cut(s)	233, 1229, 1418
BpuEI	CTTGAG	4 cut(s)	145, 809, 1391, 1435
Bsa29I	ATCGAT	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	735, 1487, 1488
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	1171
Bse1I	ACTGG	2 cut(s)	1212, 1435
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	1059, 1489
BseCI	ATCGAT	1 cut(s)	532
BseDI	CCNNGG	3 cut(s)	735, 1487, 1488
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	1171
BseMII	CTCAG	4 cut(s)	20, 49, 431, 1145
BseNI	ACTGG	2 cut(s)	1212, 1435
BseRI	GAGGAG	1 cut(s)	1094
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	595, 740
BshVI	ATCGAT	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	1497
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	4 cut(s)	39, 220, 377, 458
BslI	CCNNNNNNNGG	1 cut(s)	1171
BsmAI	GTCTC	4 cut(s)	50, 116, 415, 1367
BsmBI	CGTCTC	2 cut(s)	116, 1367
BsmFI	GGGAC	4 cut(s)	39, 220, 377, 458
BsnI	GGCC	2 cut(s)	595, 740
Bsp1286I	GDGCHC	1 cut(s)	1497
Bsp1407I	TGTACA	1 cut(s)	1030
Bsp143I	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
BspACI	CCGC	5 cut(s)	20, 23, 189, 1195, 1457
BspANI	GGCC	2 cut(s)	595, 740
BspCNI	CTCAG	4 cut(s)	21, 48, 430, 1146
BspDI	ATCGAT	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	20
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	1478, 1482
BspTI	CTTAAG	2 cut(s)	320, 460
BsrGI	TGTACA	1 cut(s)	1030
BsrI	ACTGG	2 cut(s)	1212, 1435
BssECI	CCNNGG	3 cut(s)	735, 1487, 1488
BssMI	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	1059, 1489
Bst4CI	ACNGT	4 cut(s)	425, 806, 1035, 1192
Bst6I	CTCTTC	1 cut(s)	704
BstAFI	CTTAAG	2 cut(s)	320, 460
BstAUI	TGTACA	1 cut(s)	1030
BstC8I	GCNNGC	3 cut(s)	597, 668, 1055
BstDEI	CTNAG	4 cut(s)	29, 35, 417, 1154
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	8 cut(s)	400, 451, 532, 952, 1087, 1123, 1477, 1486
BstMAI	GTCTC	4 cut(s)	50, 116, 415, 1367
BstMBI	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 1063
BstNI	CCWGG	2 cut(s)	1059, 1489
BstSCI	CCNGG	2 cut(s)	1057, 1487
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	878
BstX2I	RGATCY	2 cut(s)	1084, 1474
BstYI	RGATCY	2 cut(s)	1084, 1474
Bsu15I	ATCGAT	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	595, 740
BsuTUI	ATCGAT	1 cut(s)	532
BtrI	CACGTC	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	597, 668, 1055
Cfr13I	GGNCC	2 cut(s)	739, 1192
ClaI	ATCGAT	1 cut(s)	532
CpoI	CGGWCCG	1 cut(s)	1192
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	455, 1031, 1446
CspI	CGGWCCG	1 cut(s)	1192
CviAII	CATG	4 cut(s)	309, 452, 1077, 1403
CviQI	GTAC	3 cut(s)	455, 1031, 1446
DdeI	CTNAG	4 cut(s)	29, 35, 417, 1154
DpnI	GATC	8 cut(s)	399, 450, 531, 951, 1086, 1122, 1476, 1485
DpnII	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
DraI	TTTAAA	1 cut(s)	1422
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
EciI	GGCGGA	1 cut(s)	1184
Ecl136II	GAGCTC	1 cut(s)	1495
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	1497
Eco47I	GGWCC	1 cut(s)	1192
Eco53kI	GAGCTC	1 cut(s)	1495
Eco57I	CTGAAG	4 cut(s)	671, 682, 872, 1395
EcoICRI	GAGCTC	1 cut(s)	1495
EcoRII	CCWGG	2 cut(s)	1057, 1487
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	1497
ErhI	CCWWGG	1 cut(s)	735
Esp3I	CGTCTC	2 cut(s)	116, 1367
FaeI	CATG	4 cut(s)	312, 455, 1080, 1406
FaqI	GGGAC	4 cut(s)	39, 220, 377, 458
FatI	CATG	4 cut(s)	308, 451, 1076, 1402
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	21, 52
FriOI	GRGCYC	1 cut(s)	1497
Fsp4HI	GCNGC	2 cut(s)	21, 52
FspBI	CTAG	6 cut(s)	179, 782, 1082, 1181, 1253, 1331
GluI	GCNGC	2 cut(s)	21, 52
GsuI	CTGGAG	3 cut(s)	233, 1229, 1418
HaeIII	GGCC	2 cut(s)	595, 740
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	312, 455, 1080, 1406
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HinfI	GANTC	7 cut(s)	43, 65, 267, 316, 415, 763, 849
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	2 cut(s)	1034, 1353
Hpy166II	GTNNAC	4 cut(s)	139, 428, 439, 988
Hpy188III	TCNNGA	9 cut(s)	162, 212, 401, 412, 552, 635, 826, 1082, 1172
Hpy8I	GTNNAC	4 cut(s)	139, 428, 439, 988
HpyCH4III	ACNGT	4 cut(s)	425, 806, 1035, 1192
HpyCH4IV	ACGT	2 cut(s)	89, 109
HpyCH4V	TGCA	3 cut(s)	599, 836, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 1063
HpyF3I	CTNAG	4 cut(s)	29, 35, 417, 1154
HpySE526I	ACGT	2 cut(s)	89, 109
Hsp92II	CATG	4 cut(s)	312, 455, 1080, 1406
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
LmnI	GCTCC	5 cut(s)	214, 1071, 1166, 1437, 1492
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	600, 823
MaeI	CTAG	6 cut(s)	179, 782, 1082, 1181, 1253, 1331
MaeII	ACGT	2 cut(s)	89, 109
MaeIII	GTNAC	3 cut(s)	464, 730, 1186
MalI	GATC	8 cut(s)	399, 450, 531, 951, 1086, 1122, 1476, 1485
MboI	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	2 cut(s)	1084, 1474
MhlI	GDGCHC	1 cut(s)	1497
MlyI	GAGTC	3 cut(s)	52, 310, 409
MmeI	TCCRAC	4 cut(s)	240, 704, 732, 1224
MslI	CAYNNNNRTG	1 cut(s)	134
MspCI	CTTAAG	2 cut(s)	320, 460
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	2 cut(s)	1059, 1489
MunI	CAATTG	1 cut(s)	1014
MvaI	CCWGG	2 cut(s)	1059, 1489
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	214, 1063
NdeII	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
NlaIII	CATG	4 cut(s)	312, 455, 1080, 1406
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	345
PasI	CCCWGGG	1 cut(s)	1488
PfeI	GAWTC	4 cut(s)	65, 267, 763, 849
PflFI	GACNNNGTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	22, 53
PleI	GAGTC	3 cut(s)	51, 310, 409
PpsI	GAGTC	3 cut(s)	51, 310, 409
Psp124BI	GAGCTC	1 cut(s)	1497
Psp6I	CCWGG	2 cut(s)	1057, 1487
PspGI	CCWGG	2 cut(s)	1057, 1487
PspPI	GGNCC	2 cut(s)	739, 1192
PsuI	RGATCY	2 cut(s)	1084, 1474
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	3 cut(s)	456, 1032, 1447
RsaNI	GTAC	3 cut(s)	455, 1031, 1446
RseI	CAYNNNNRTG	1 cut(s)	134
Rsr2I	CGGWCCG	1 cut(s)	1192
RsrII	CGGWCCG	1 cut(s)	1192
SacI	GAGCTC	1 cut(s)	1497
SatI	GCNGC	2 cut(s)	21, 52
Sau3AI	GATC	8 cut(s)	397, 448, 529, 949, 1084, 1120, 1474, 1483
Sau96I	GGNCC	2 cut(s)	739, 1192
SchI	GAGTC	3 cut(s)	52, 310, 409
ScrFI	CCNGG	2 cut(s)	1059, 1489
SduI	GDGCHC	1 cut(s)	1497
SfaNI	GCATC	2 cut(s)	600, 823
SinI	GGWCC	1 cut(s)	1192
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	6 cut(s)	160, 320, 460, 824, 1370, 1450
SmoI	CTYRAG	6 cut(s)	160, 320, 460, 824, 1370, 1450
SsiI	CCGC	5 cut(s)	20, 23, 189, 1195, 1457
SspMI	CTAG	6 cut(s)	179, 782, 1082, 1181, 1253, 1331
SstI	GAGCTC	1 cut(s)	1497
StyD4I	CCNGG	2 cut(s)	1057, 1487
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	425, 806, 1035, 1192
TaiI	ACGT	2 cut(s)	92, 112
TaqI	TCGA	5 cut(s)	147, 350, 413, 532, 847
TatI	WGTACW	2 cut(s)	454, 1030
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	4 cut(s)	65, 267, 763, 849
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	4 cut(s)	533, 569, 1239, 1327
TspRI	CASTG	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	91
Vha464I	CTTAAG	2 cut(s)	320, 460
VpaK11BI	GGWCC	1 cut(s)	1192
XapI	RAATTY	4 cut(s)	300, 977, 1090, 1357
XbaI	TCTAGA	1 cut(s)	1081
XspI	CTAG	6 cut(s)	179, 782, 1082, 1181, 1253, 1331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.