Rh6AG428400

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003608
Physical Location & Seq
Forward (+)
61994077 .. 62009120
15044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG428400.1

Sequence Viewer

Length: 498 bp
ATGTCAACCGGAGCCACAAAATGCAGCAAGATCCGCCACATTGTGAAGCTCCGCCAGTTGCTGCGGCGGTGGCGCTGCAAGGCCCGCATGTCGTCAGCTAGCCGCACACCGTCGGATGTCCCAGCGGGACACGTGGCGATCTGCGTCGGCCCCTACTGCACCAGATACGTCATGCCCGCGTCGTACCTTAACCACCCCGTGTTCAAGAAGCTCCTCGTACAAGCCGAGGAGGAGTACGGCTTCACTAACCAAGGCCCGCTGGCGATCCCATGCGACGAGTCACTCTTTGAAGAGGTGGTCCGGTACATTTCCGGATCGGAGTCCGGCGGGTCGGCCCGGTACTGCCACGTGGACGTGAGGAGTAACTTCGATTTCTTGGCCGATTCCCGACCGTTGCTTCGTGGCTTTTCCGAGAAAACAATCTGGTTCTCATCAAATGGCCATGGTTTTTCTTTATTATTCCAATTTCCAATTCCAAACGTGCGTGGTCAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

165

Amino Acids

18.52

Weight (kDa)

9.41

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 103 2.1e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 311
AclWI GGATC 3 cut(s) 25, 259, 322
AcoI YGGCCR 2 cut(s) 378, 439
AcvI CACGTG 2 cut(s) 133, 349
AdeI CACNNNGTG 2 cut(s) 43, 199
AfaI GTAC 5 cut(s) 185, 219, 236, 305, 341
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 205, 290
AjiI CACGTC 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 3 cut(s) 49, 98, 211
AluI AGCT 3 cut(s) 49, 98, 211
AlwI GGATC 3 cut(s) 25, 259, 322
AlwNI CAGNNNCTG 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 6 cut(s) 81, 148, 253, 333, 378, 439
ApeKI GCWGC 3 cut(s) 24, 61, 75
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 5 cut(s) 82, 149, 254, 298, 334
AsuC2I CCSGG 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 441
BbrPI CACGTG 2 cut(s) 133, 349
BbvI GCAGC 3 cut(s) 36, 48, 62
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 5 cut(s) 25, 62, 65, 76, 103
BlsI GCNGC 5 cut(s) 26, 63, 66, 77, 104
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 5 cut(s) 82, 149, 254, 298, 334
BmiI GGNNCC 2 cut(s) 13, 151
BmrFI CCNGG 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 133, 349
BsaJI CCNNGG 3 cut(s) 225, 250, 442
BsaWI WCCGGW 3 cut(s) 8, 300, 311
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 225, 250, 442
BseGI GGATG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 4 cut(s) 203, 242, 245, 373
BseXI GCAGC 3 cut(s) 36, 48, 62
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 6 cut(s) 83, 150, 255, 335, 380, 441
BsiEI CGRYCG 1 cut(s) 392
BsiSI CCGG 5 cut(s) 9, 301, 312, 324, 337
BslFI GGGAC 2 cut(s) 104, 141
BsmFI GGGAC 2 cut(s) 104, 141
BsnI GGCC 6 cut(s) 83, 150, 255, 335, 380, 441
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 4 cut(s) 30, 138, 264, 314
Bsp19I CCATGG 1 cut(s) 442
BspANI GGCC 6 cut(s) 83, 150, 255, 335, 380, 441
BspEI TCCGGA 1 cut(s) 311
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 13, 151
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 3 cut(s) 25, 259, 322
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 225, 250, 442
BssMI GATC 4 cut(s) 30, 138, 264, 314
BssT1I CCWWGG 2 cut(s) 250, 442
Bst4CI ACNGT 2 cut(s) 111, 393
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 133, 349
BstC8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 33, 141, 267, 317
BstMBI GATC 4 cut(s) 30, 138, 264, 314
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 335
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 36, 48, 62
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 6 cut(s) 83, 150, 255, 335, 380, 441
BtgI CCRYGG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 5 cut(s) 85, 100, 177, 257, 261
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 82, 149, 254, 298, 334
CseI GACGC 2 cut(s) 133, 168
Csp6I GTAC 5 cut(s) 184, 218, 235, 304, 340
CviAII CATG 4 cut(s) 88, 172, 270, 443
CviQI GTAC 5 cut(s) 184, 218, 235, 304, 340
DpnI GATC 4 cut(s) 32, 140, 266, 316
DpnII GATC 4 cut(s) 30, 138, 264, 314
DraIII CACNNNGTG 2 cut(s) 43, 199
EaeI YGGCCR 2 cut(s) 378, 439
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 2 cut(s) 23, 41
Eco130I CCWWGG 2 cut(s) 250, 442
Eco47I GGWCC 1 cut(s) 298
Eco72I CACGTG 2 cut(s) 133, 349
EcoT14I CCWWGG 2 cut(s) 250, 442
ErhI CCWWGG 2 cut(s) 250, 442
FaeI CATG 4 cut(s) 91, 175, 273, 446
FaiI YATR 4 cut(s) 89, 173, 271, 444
FaqI GGGAC 2 cut(s) 104, 141
FatI CATG 4 cut(s) 87, 171, 269, 442
FauI CCCGC 5 cut(s) 92, 118, 184, 264, 320
Fnu4HI GCNGC 5 cut(s) 25, 62, 65, 76, 103
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 25, 62, 65, 76, 103
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 74
GluI GCNGC 5 cut(s) 25, 62, 65, 76, 103
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 6 cut(s) 83, 150, 255, 335, 380, 441
HapII CCGG 5 cut(s) 9, 301, 312, 324, 337
HgaI GACGC 2 cut(s) 133, 168
HhaI GCGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 91, 175, 273, 446
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 278, 320, 383
HpaII CCGG 5 cut(s) 9, 301, 312, 324, 337
Hpy166II GTNNAC 2 cut(s) 6, 352
Hpy188I TCNGA 3 cut(s) 115, 319, 412
Hpy188III TCNNGA 3 cut(s) 205, 312, 387
Hpy8I GTNNAC 2 cut(s) 6, 352
Hpy99I CGWCG 4 cut(s) 115, 149, 184, 278
HpyCH4III ACNGT 2 cut(s) 111, 393
HpyCH4IV ACGT 5 cut(s) 132, 168, 348, 354, 480
HpyCH4V TGCA 3 cut(s) 24, 78, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
HpySE526I ACGT 5 cut(s) 132, 168, 348, 354, 480
Hsp92II CATG 4 cut(s) 91, 175, 273, 446
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 311
Kzo9I GATC 4 cut(s) 30, 138, 264, 314
LmnI GCTCC 3 cut(s) 11, 54, 216
Lsp1109I GCAGC 3 cut(s) 36, 48, 62
MaeI CTAG 1 cut(s) 99
MaeII ACGT 5 cut(s) 132, 168, 348, 354, 480
MaeIII GTNAC 2 cut(s) 279, 362
MalI GATC 4 cut(s) 32, 140, 266, 316
MboI GATC 4 cut(s) 30, 138, 264, 314
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 2 cut(s) 464, 471
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 2 cut(s) 287, 329
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 220, 223, 224, 286, 351
Mox20I TGGCCA 1 cut(s) 441
MroI TCCGGA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 441
MseI TTAA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 441
MspA1I CMGCKG 2 cut(s) 125, 259
MspI CCGG 5 cut(s) 9, 301, 312, 324, 337
MspR9I CCNGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 33, 70, 84, 156
NciI CCSGG 1 cut(s) 337
NcoI CCATGG 1 cut(s) 442
NdeII GATC 4 cut(s) 30, 138, 264, 314
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 4 cut(s) 91, 175, 273, 446
NlaIV GGNNCC 2 cut(s) 13, 151
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 279
NspI RCATGY 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 5 cut(s) 26, 63, 66, 77, 104
PleI GAGTC 2 cut(s) 286, 328
PmaCI CACGTG 2 cut(s) 133, 349
PmlI CACGTG 2 cut(s) 133, 349
PpsI GAGTC 2 cut(s) 286, 328
Ppu21I YACGTR 2 cut(s) 133, 349
PspCI CACGTG 2 cut(s) 133, 349
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 13, 151
PspPI GGNCC 5 cut(s) 82, 149, 254, 298, 334
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 5 cut(s) 185, 219, 236, 305, 341
RsaNI GTAC 5 cut(s) 184, 218, 235, 304, 340
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 5 cut(s) 25, 62, 65, 76, 103
Sau3AI GATC 4 cut(s) 30, 138, 264, 314
Sau96I GGNCC 5 cut(s) 82, 149, 254, 298, 334
SchI GAGTC 2 cut(s) 287, 329
ScrFI CCNGG 1 cut(s) 337
SinI GGWCC 1 cut(s) 298
Sse9I AATT 2 cut(s) 464, 471
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 2 cut(s) 250, 442
TaaI ACNGT 2 cut(s) 111, 393
TaiI ACGT 5 cut(s) 135, 171, 351, 357, 483
TaqI TCGA 1 cut(s) 369
TasI AATT 2 cut(s) 464, 471
TauI GCSGC 2 cut(s) 67, 105
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 24, 61, 75
Tsp45I GTSAC 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.