RLG00000013903

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003608
Physical Location & Seq
Reverse (-)
43993390 .. 43993999
610 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013903

Sequence Viewer

Length: 501 bp
ATGTCGACGGGAATGAGCAAATGCAACAAGCTCCGACGCATCATCAGAATCCGTCAAATGCTACAACGCTGGCACAAGAAGGCGCACCTCAACGCCTCACCGCTTGCGCCGTCGGACGTCCCAGCGGGACACGTCGCCGTCTGCGTGGGCAGCAGCTGCAGGAGGTTCATCGTGCGCGCCACCTACCTGAACCACCCCATCTTCAGGAAGCTTCTGGTGCAGGCCGAGGAGGAGTACGGCTTCGCCAACCAGCCGGGACCTCTGGCTATCCCATGCGACGAGTCGTTCTTCGAAGAGGTTCTTCGGATGCTCTCCAGGTCGGACTCTGGTAGATCCAGGAGGTTCTTGAGCCTGGAGGATCTCCAGAGACCCTGCCATGTTGATACTTTGAACAATCTTCAAGTTCTGGATGAATCCTGGCCTTTGCTCCACGGGATGGCTGATAAATCATGTTGTAGTATTATTAGGGCTTTCCTAAGAGGAGAATTTGTGCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

167

Amino Acids

19.01

Weight (kDa)

9.27

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 104 2.6e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 101, 125
AclWI GGATC 2 cut(s) 327, 366
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 204, 436
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 391, 401
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 4 cut(s) 314, 335, 351, 416
AluBI AGCT 3 cut(s) 31, 156, 211
AluI AGCT 3 cut(s) 31, 156, 211
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 2 cut(s) 327, 366
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 2 cut(s) 222, 419
ApeKI GCWGC 3 cut(s) 150, 153, 156
ApoI RAATTY 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 4 cut(s) 85, 109, 177, 179
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 90
AsuII TTCGAA 1 cut(s) 291
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 143, 162, 165
BccI CCATC 2 cut(s) 206, 430
BceAI ACGGC 3 cut(s) 94, 122, 253
BciT130I CCWGG 4 cut(s) 316, 337, 353, 418
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 361
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 3 cut(s) 151, 154, 157
BlsI GCNGC 3 cut(s) 152, 155, 158
Bme1390I CCNGG 5 cut(s) 255, 316, 337, 353, 418
Bme18I GGWCC 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 5 cut(s) 255, 316, 337, 353, 418
BmsI GCATC 2 cut(s) 48, 297
BpmI CTGGAG 3 cut(s) 298, 347, 374
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 225, 430
BsaXI ACNNNNNCTCC 1 cut(s) 474
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 436
BseBI CCWGG 4 cut(s) 316, 337, 353, 418
BseDI CCNNGG 2 cut(s) 225, 430
BseGI GGATG 3 cut(s) 312, 415, 441
BseLI CCNNNNNNNGG 2 cut(s) 204, 436
BsePI GCGCGC 1 cut(s) 175
BseRI GAGGAG 3 cut(s) 242, 245, 495
BseXI GCAGC 3 cut(s) 143, 162, 165
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 224, 421
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 3 cut(s) 104, 141, 270
BslI CCNNNNNNNGG 2 cut(s) 204, 436
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 3 cut(s) 104, 141, 270
BsnI GGCC 2 cut(s) 224, 421
Bso31I GGTCTC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 332, 358
BspACI CCGC 2 cut(s) 101, 125
BspANI GGCC 2 cut(s) 224, 421
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 327, 366
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 225, 430
BssHII GCGCGC 1 cut(s) 175
BssMI GATC 2 cut(s) 332, 358
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 316, 337, 353, 418
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 71, 105, 177, 222
BstDEI CTNAG 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 3 cut(s) 312, 415, 441
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 4 cut(s) 85, 109, 177, 179
BstKTI GATC 2 cut(s) 335, 361
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 332, 358
BstMWI GCNNNNNNNGC 3 cut(s) 150, 156, 217
BstNI CCWGG 4 cut(s) 316, 337, 353, 418
BstSCI CCNGG 5 cut(s) 253, 314, 335, 351, 416
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 143, 162, 165
BstX2I RGATCY 2 cut(s) 332, 358
BstYI RGATCY 2 cut(s) 332, 358
BsuRI GGCC 2 cut(s) 224, 421
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 312, 415, 441
Cac8I GCNNGC 4 cut(s) 71, 105, 177, 222
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 4 cut(s) 85, 109, 177, 179
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 273, 377, 450
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 476
DpnI GATC 2 cut(s) 334, 360
DpnII GATC 2 cut(s) 332, 358
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 4 cut(s) 314, 335, 351, 416
FaeI CATG 3 cut(s) 276, 380, 453
FaiI YATR 3 cut(s) 274, 378, 451
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 3 cut(s) 104, 141, 270
FatI CATG 3 cut(s) 272, 376, 449
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 151, 154, 157
FokI GGATG 3 cut(s) 319, 422, 448
Fsp4HI GCNGC 3 cut(s) 151, 154, 157
GlaI GCGC 4 cut(s) 84, 108, 176, 178
GluI GCNGC 3 cut(s) 151, 154, 157
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 3 cut(s) 298, 347, 374
HaeIII GGCC 2 cut(s) 224, 421
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 45
HhaI GCGC 4 cut(s) 85, 109, 177, 179
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 276, 380, 453
Hin6I GCGC 4 cut(s) 83, 107, 175, 177
HinP1I GCGC 4 cut(s) 83, 107, 175, 177
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 4 cut(s) 48, 281, 323, 413
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 5 cut(s) 35, 47, 115, 306, 322
Hpy188III TCNNGA 4 cut(s) 205, 346, 364, 407
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 5 cut(s) 10, 39, 115, 137, 281
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 2 cut(s) 117, 132
HpyCH4V TGCA 4 cut(s) 24, 159, 220, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 156, 217
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 117, 132
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 276, 380, 453
HspAI GCGC 4 cut(s) 83, 107, 175, 177
Kzo9I GATC 2 cut(s) 332, 358
LmnI GCTCC 2 cut(s) 36, 432
Lsp1109I GCAGC 3 cut(s) 143, 162, 165
LweI GCATC 2 cut(s) 48, 297
MaeII ACGT 2 cut(s) 117, 132
MalI GATC 2 cut(s) 334, 360
MboI GATC 2 cut(s) 332, 358
MboII GAAGA 5 cut(s) 193, 280, 293, 305, 389
MflI RGATCY 2 cut(s) 332, 358
MluCI AATT 1 cut(s) 485
MlyI GAGTC 2 cut(s) 290, 317
MmeI TCCRAC 3 cut(s) 58, 93, 300
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 1 cut(s) 499
MspA1I CMGCKG 2 cut(s) 125, 156
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 5 cut(s) 255, 316, 337, 353, 418
MvaI CCWGG 4 cut(s) 316, 337, 353, 418
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 150, 156, 217
NciI CCSGG 1 cut(s) 255
NdeII GATC 2 cut(s) 332, 358
NlaIII CATG 3 cut(s) 276, 380, 453
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 250
NspV TTCGAA 1 cut(s) 291
PauI GCGCGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 48, 413
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 3 cut(s) 152, 155, 158
PleI GAGTC 2 cut(s) 289, 317
PpsI GAGTC 2 cut(s) 289, 317
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 4 cut(s) 314, 335, 351, 416
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 4 cut(s) 314, 335, 351, 416
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 332, 358
PteI GCGCGC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 3 cut(s) 151, 154, 157
Sau3AI GATC 2 cut(s) 332, 358
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 2 cut(s) 290, 317
ScrFI CCNGG 5 cut(s) 255, 316, 337, 353, 418
SfaNI GCATC 2 cut(s) 48, 297
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 1 cut(s) 485
SsiI CCGC 2 cut(s) 101, 125
StyD4I CCNGG 5 cut(s) 253, 314, 335, 351, 416
TaiI ACGT 2 cut(s) 120, 135
TaqI TCGA 2 cut(s) 5, 291
TasI AATT 1 cut(s) 485
TfiI GAWTC 2 cut(s) 48, 413
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TseI GCWGC 3 cut(s) 150, 153, 156
TspDTI ATGAA 2 cut(s) 157, 426
TspGWI ACGGA 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 297
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.