Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003608

Physical Location & Seq

Genomic Coordinates Reverse (-)

11528634 .. 11529256

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G082200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCACCAGCAATCAGCAAATGCAACAAAATCCGACGCATTGTGAGAATCCGTCAAATGCTACAAAGCTGGCACAAGAAGGCCCGCCTCGCGGCAGCACGTGCACCGTCCGACGTCCCCGCAGGACACGTGGCGGTCTGCGTGGGGAGCAGCTGCAGGCGGTTTATCGTGCGCGCGACGTATCTGAACCACCCCATCTTCCAGAAGCTTCTAGTACAAGCCGAGGAGGAGTACGGCTTCGCCAACCAAGGGCCCTTGACTATCCCGTGCGACGAGTCGTTTTTCGAGGAGGTTCTCCGGGTCGTGGCCCGGTCCGAGTCCAGTAACTCCGGGCGGTTCTTAAGCATCGATGATCTCCAGAGACGCTGCCACGTGGATGTTTTGAGTCAGCTTGAATATTTGGGTGAATCTCGGCCGTTGCTTCACGGGCTTGCTGATAAATCAGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

9.21

Isoelectric Point (pI)

66.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19840 AT1G75590 AT5G10990
fragaria_vesca	FvH4_2g10760 FvH4_2g38740
malus_domestica	MD00G1067200.v1.1 MD08G1015100.v1.1 MD10G1061400.v1.1 MD15G1014300.v1.1
prunus_persica	Prupe.1G368100_v2.0.a1 Prupe.8G082200_v2.0.a1
pyrus_communis	pycom05g04450 pycom08g01350 pycom10g04730 pycom15g01240
rosa_chinensis	RchiOBHm_Chr6g0268541 RchiOBHm_Chr6g0302561
rosa_laevigata	RLG00000011161 RLG00000013903
rosa_multiflora	Rmu_co8217562.1_g000002 Rmu_sc0003473.1_g000013 Rmu_sc0008287.1_g000004 Rmu_sc0009580.1_g000002 Rmu_sc0012913.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165610 Rroxscaffold_7G00199740
rosa_rugosa	Rorug06G0043000 Rorug06G0315100
rosa_samantha	Rh6AG428400 Rh6BG474300 Rh6CG160400 Rh6CG440600 Rh6DG151900
rosa_wichuraiana	Rw6G014030 Rw6G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccII	CGCG	3 cut(s)	92, 174, 176
AciI	CCGC	6 cut(s)	85, 92, 120, 134, 160, 334
AcoI	YGGCCR	1 cut(s)	413
AcvI	CACGTG	3 cut(s)	101, 130, 373
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	216, 233
AfiI	CCNNNNNNNGG	3 cut(s)	91, 249, 304
AflII	CTTAAG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	4 cut(s)	69, 153, 208, 391
AluI	AGCT	4 cut(s)	69, 153, 208, 391
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	4 cut(s)	81, 251, 306, 413
ApaI	GGGCCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	4 cut(s)	95, 150, 153, 366
AspLEI	GCGC	2 cut(s)	174, 176
AspS9I	GGNCC	5 cut(s)	82, 251, 252, 307, 312
AsuC2I	CCSGG	3 cut(s)	299, 310, 331
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	312
BaeGI	GKGCMC	2 cut(s)	106, 255
BanII	GRGCYC	1 cut(s)	255
BbrPI	CACGTG	3 cut(s)	101, 130, 373
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	4 cut(s)	107, 140, 162, 353
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	250, 400
BcnI	CCSGG	3 cut(s)	299, 310, 331
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	154
BfrI	CTTAAG	1 cut(s)	340
BisI	GCNGC	5 cut(s)	93, 96, 151, 154, 367
BlsI	GCNGC	5 cut(s)	94, 97, 152, 155, 368
Bme1390I	CCNGG	3 cut(s)	299, 310, 331
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	5 cut(s)	82, 251, 252, 307, 312
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	3 cut(s)	299, 310, 331
BmsI	GCATC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	341
BpuMI	CCSGG	3 cut(s)	299, 310, 331
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	3 cut(s)	101, 130, 373
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	222, 247
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 249, 304
Bse1I	ACTGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	222, 247
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	91, 249, 304
BseNI	ACTGG	1 cut(s)	321
BsePI	GCGCGC	1 cut(s)	172
BseRI	GAGGAG	3 cut(s)	239, 242, 302
BseSI	GKGCMC	2 cut(s)	106, 255
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	4 cut(s)	107, 140, 162, 353
Bsh1236I	CGCG	3 cut(s)	92, 174, 176
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	4 cut(s)	83, 253, 308, 415
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	298, 310, 330
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	91, 249, 304
BsmAI	GTCTC	1 cut(s)	355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	83, 253, 308, 415
Bsp120I	GGGCCC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	106, 255
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	6 cut(s)	85, 92, 120, 134, 160, 334
BspANI	GGCC	4 cut(s)	83, 253, 308, 415
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	3 cut(s)	92, 174, 176
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	222, 247
BssHII	GCGCGC	1 cut(s)	172
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstBAI	YACGTR	3 cut(s)	101, 130, 373
BstC8I	GCNNGC	5 cut(s)	71, 85, 158, 174, 432
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	3 cut(s)	92, 174, 176
BstHHI	GCGC	2 cut(s)	174, 176
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 101, 147, 427
BstSCI	CCNGG	3 cut(s)	297, 308, 329
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	2 cut(s)	106, 255
BstUI	CGCG	3 cut(s)	92, 174, 176
BstV1I	GCAGC	4 cut(s)	107, 140, 162, 353
BstZI	CGGCCG	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	83, 253, 308, 415
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	382
Cac8I	GCNNGC	5 cut(s)	71, 85, 158, 174, 432
CfoI	GCGC	2 cut(s)	174, 176
Cfr13I	GGNCC	5 cut(s)	82, 251, 252, 307, 312
ClaI	ATCGAT	1 cut(s)	348
CpoI	CGGWCCG	1 cut(s)	312
CseI	GACGC	2 cut(s)	45, 372
Csp6I	GTAC	2 cut(s)	215, 232
CspI	CGGWCCG	1 cut(s)	312
CviQI	GTAC	2 cut(s)	215, 232
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
EclXI	CGGCCG	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	413
Eco72I	CACGTG	3 cut(s)	101, 130, 373
EcoO109I	RGGNCCY	2 cut(s)	251, 252
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	355
FaiI	YATR	1 cut(s)	448
FaqI	GGGAC	1 cut(s)	101
FauI	CCCGC	2 cut(s)	92, 127
Fnu4HI	GCNGC	5 cut(s)	93, 96, 151, 154, 367
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	93, 96, 151, 154, 367
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	173, 175
GluI	GCNGC	5 cut(s)	93, 96, 151, 154, 367
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	4 cut(s)	83, 253, 308, 415
HapII	CCGG	3 cut(s)	298, 310, 330
HgaI	GACGC	2 cut(s)	45, 372
HhaI	GCGC	2 cut(s)	174, 176
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	2 cut(s)	172, 174
HinP1I	GCGC	2 cut(s)	172, 174
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	5 cut(s)	48, 275, 317, 385, 407
HpaII	CCGG	3 cut(s)	298, 310, 330
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	4 cut(s)	35, 112, 186, 316
Hpy188III	TCNNGA	2 cut(s)	202, 358
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	4 cut(s)	39, 116, 181, 275
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	5 cut(s)	100, 114, 129, 179, 372
HpyCH4V	TGCA	3 cut(s)	24, 104, 156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 101, 147, 427
HpySE526I	ACGT	5 cut(s)	100, 114, 129, 179, 372
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	2 cut(s)	172, 174
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	4 cut(s)	107, 140, 162, 353
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	5 cut(s)	100, 114, 129, 179, 372
MaeIII	GTNAC	2 cut(s)	3, 323
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	106, 255
MlyI	GAGTC	3 cut(s)	284, 326, 394
MmeI	TCCRAC	2 cut(s)	58, 135
MnlI	CCTC	5 cut(s)	98, 217, 220, 280, 283
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	3 cut(s)	298, 310, 330
MspR9I	CCNGG	3 cut(s)	299, 310, 331
MvnI	CGCG	3 cut(s)	92, 174, 176
MwoI	GCNNNNNNNGC	4 cut(s)	89, 101, 147, 427
NciI	CCSGG	3 cut(s)	299, 310, 331
NdeII	GATC	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	2 cut(s)	247, 391
NmuCI	GTSAC	1 cut(s)	3
PauI	GCGCGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	48, 407
PkrI	GCNGC	5 cut(s)	94, 97, 152, 155, 368
PleI	GAGTC	3 cut(s)	283, 325, 393
PmaCI	CACGTG	3 cut(s)	101, 130, 373
PmlI	CACGTG	3 cut(s)	101, 130, 373
PpsI	GAGTC	3 cut(s)	283, 325, 393
Ppu21I	YACGTR	3 cut(s)	101, 130, 373
PspCI	CACGTG	3 cut(s)	101, 130, 373
PspN4I	GGNNCC	1 cut(s)	253
PspOMI	GGGCCC	1 cut(s)	251
PspPI	GGNCC	5 cut(s)	82, 251, 252, 307, 312
PstI	CTGCAG	1 cut(s)	158
PteI	GCGCGC	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	153
RsaI	GTAC	2 cut(s)	216, 233
RsaNI	GTAC	2 cut(s)	215, 232
RseI	CAYNNNNRTG	1 cut(s)	375
Rsr2I	CGGWCCG	1 cut(s)	312
RsrII	CGGWCCG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	93, 96, 151, 154, 367
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	5 cut(s)	82, 251, 252, 307, 312
SchI	GAGTC	3 cut(s)	284, 326, 394
ScrFI	CCNGG	3 cut(s)	299, 310, 331
SduI	GDGCHC	2 cut(s)	106, 255
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SsiI	CCGC	6 cut(s)	85, 92, 120, 134, 160, 334
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	297, 308, 329
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	5 cut(s)	103, 117, 132, 182, 375
TaqI	TCGA	2 cut(s)	285, 348
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	48, 407
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	95, 150, 153, 366
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	312
XspI	CTAG	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.