pycom15g01240

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003608
Physical Location & Seq
Reverse (-)
706010 .. 706462
453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g01240.1

Sequence Viewer

Length: 453 bp
ATGTCAGCCGGATTCGGAAAATGCAGCAAGATCCGCCACATTGTGCGGCTCCGCCAGTTGCTGCGGCGGTGGCGCAGCAAGGCCCGCACGTCCGCCAAGCTCATACCCTCCGATGTTCCCGCGGGACACGTGGCCGTCTGCGTGGGCACCAGCTGCACCAGATTCGTGGTGCCCGCGTCGTTCCTGAACCACCCCGTCTTCAAGAAGCTCTTGGTGCAAGCCGAGGAGGAGTACGGCTTCTCGAACAGCGGTCCGCTCGCGATCCCCTGCGACGAGTCGCAGTTCGAGGAGGTGCTTCGGTCCATTTCCCGGTCCGAGTCGGGTAACTCGACCCGGTTAGTCAACATCGCCGACTTCCAGGGATGCTGCCACGTCGGCGTCCGGAGTAACCTCGATTTGTGGGCCGATTCTCGACCGTTGCTTCGTGGACTTTCCGAGAAGACAATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

151

Amino Acids

16.66

Weight (kDa)

9.58

Isoelectric Point (pI)

68.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 102 1.1e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 169
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 3 cut(s) 122, 176, 260
AccIII TCCGGA 1 cut(s) 381
AclWI GGATC 2 cut(s) 25, 256
AcoI YGGCCR 1 cut(s) 132
AcvI CACGTG 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 202
AjiI CACGTC 2 cut(s) 90, 373
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 3 cut(s) 100, 153, 208
AluI AGCT 3 cut(s) 100, 153, 208
AlwI GGATC 2 cut(s) 25, 256
AlwNI CAGNNNCTG 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 3 cut(s) 81, 132, 402
ApeKI GCWGC 5 cut(s) 24, 61, 75, 153, 366
ArsI GACNNNNNNTTYG 2 cut(s) 405, 437
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 5 cut(s) 82, 251, 300, 312, 402
AsuC2I CCSGG 2 cut(s) 310, 334
AvaII GGWCC 3 cut(s) 251, 300, 312
BaeGI GKGCMC 2 cut(s) 149, 174
BanI GGYRCC 2 cut(s) 146, 169
BbrPI CACGTG 1 cut(s) 130
BbsI GAAGAC 2 cut(s) 190, 446
BbvI GCAGC 5 cut(s) 36, 48, 87, 140, 353
BceAI ACGGC 2 cut(s) 119, 250
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 359
BcnI CCSGG 2 cut(s) 310, 334
BglI GCCNNNNNGGC 1 cut(s) 375
BisI GCNGC 7 cut(s) 25, 47, 62, 65, 76, 154, 367
BlsI GCNGC 7 cut(s) 26, 48, 63, 66, 77, 155, 368
Bme1390I CCNGG 3 cut(s) 310, 334, 359
Bme18I GGWCC 3 cut(s) 251, 300, 312
BmgBI CACGTC 2 cut(s) 90, 373
BmgT120I GGNCC 5 cut(s) 82, 251, 300, 312, 402
BmiI GGNNCC 3 cut(s) 50, 148, 171
BmrFI CCNGG 3 cut(s) 310, 334, 359
BmsI GCATC 1 cut(s) 353
BpiI GAAGAC 2 cut(s) 190, 446
BpuMI CCSGG 2 cut(s) 310, 334
BsaAI YACGTR 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 120, 222, 358
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 381
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 3 cut(s) 120, 222, 358
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 3 cut(s) 239, 242, 302
BseSI GKGCMC 2 cut(s) 149, 174
BseXI GCAGC 5 cut(s) 36, 48, 87, 140, 353
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 3 cut(s) 122, 176, 260
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 3 cut(s) 83, 134, 404
BshNI GGYRCC 2 cut(s) 146, 169
BsiEI CGRYCG 1 cut(s) 416
BsiSI CCGG 4 cut(s) 9, 310, 334, 382
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 3 cut(s) 83, 134, 404
Bsp1286I GDGCHC 2 cut(s) 149, 174
Bsp13I TCCGGA 1 cut(s) 381
Bsp143I GATC 2 cut(s) 30, 261
Bsp68I TCGCGA 1 cut(s) 260
BspANI GGCC 3 cut(s) 83, 134, 404
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 3 cut(s) 122, 176, 260
BspLI GGNNCC 3 cut(s) 50, 148, 171
BspPI GGATC 2 cut(s) 25, 256
BspT107I GGYRCC 2 cut(s) 146, 169
BsrBI CCGCTC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 120, 222, 358
BssMI GATC 2 cut(s) 30, 261
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 85, 174, 219, 258
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 368
BstFNI CGCG 3 cut(s) 122, 176, 260
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 33, 264
BstMBI GATC 2 cut(s) 30, 261
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 6 cut(s) 33, 70, 84, 153, 214, 375
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 308, 332, 357
BstSLI GKGCMC 2 cut(s) 149, 174
BstUI CGCG 3 cut(s) 122, 176, 260
BstV1I GCAGC 5 cut(s) 36, 48, 87, 140, 353
BstV2I GAAGAC 2 cut(s) 190, 446
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 3 cut(s) 83, 134, 404
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 331
BtrI CACGTC 2 cut(s) 90, 373
BtsCI GGATG 1 cut(s) 368
BtuMI TCGCGA 1 cut(s) 260
Cac8I GCNNGC 4 cut(s) 85, 174, 219, 258
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 82, 251, 300, 312, 402
Cfr42I CCGCGG 1 cut(s) 123
CpoI CGGWCCG 2 cut(s) 251, 312
CseI GACGC 2 cut(s) 165, 367
Csp6I GTAC 1 cut(s) 232
CspI CGGWCCG 2 cut(s) 251, 312
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 32, 263
DpnII GATC 2 cut(s) 30, 261
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 132
EciI GGCGGA 3 cut(s) 23, 41, 82
Eco47I GGWCC 3 cut(s) 251, 300, 312
Eco72I CACGTG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 357
FaiI YATR 1 cut(s) 104
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 138
FauI CCCGC 4 cut(s) 92, 115, 127, 181
Fnu4HI GCNGC 7 cut(s) 25, 47, 62, 65, 76, 154, 367
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 7 cut(s) 25, 47, 62, 65, 76, 154, 367
GlaI GCGC 1 cut(s) 74
GluI GCNGC 7 cut(s) 25, 47, 62, 65, 76, 154, 367
HaeIII GGCC 3 cut(s) 83, 134, 404
HapII CCGG 4 cut(s) 9, 310, 334, 382
HgaI GACGC 2 cut(s) 165, 367
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 378
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 5 cut(s) 12, 162, 275, 317, 407
HpaII CCGG 4 cut(s) 9, 310, 334, 382
Hpy166II GTNNAC 2 cut(s) 343, 428
Hpy188I TCNGA 4 cut(s) 17, 112, 316, 436
Hpy188III TCNNGA 6 cut(s) 184, 202, 241, 259, 382, 411
Hpy8I GTNNAC 2 cut(s) 343, 428
Hpy99I CGWCG 3 cut(s) 181, 275, 377
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4IV ACGT 3 cut(s) 89, 129, 372
HpyCH4V TGCA 3 cut(s) 24, 156, 217
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 70, 84, 153, 214, 375
HpySE526I ACGT 3 cut(s) 89, 129, 372
Hsp92I GRCGYC 1 cut(s) 378
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 381
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 2 cut(s) 30, 261
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 5 cut(s) 36, 48, 87, 140, 353
LweI GCATC 1 cut(s) 353
MaeII ACGT 3 cut(s) 89, 129, 372
MaeIII GTNAC 2 cut(s) 323, 386
MalI GATC 2 cut(s) 32, 263
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 30, 261
MboII GAAGA 2 cut(s) 190, 451
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 149, 174
MluCI AATT 1 cut(s) 444
MlyI GAGTC 2 cut(s) 284, 326
MnlI CCTC 6 cut(s) 118, 217, 220, 280, 283, 401
MroI TCCGGA 1 cut(s) 381
MspA1I CMGCKG 3 cut(s) 122, 153, 249
MspI CCGG 4 cut(s) 9, 310, 334, 382
MspR9I CCNGG 3 cut(s) 310, 334, 359
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 3 cut(s) 122, 176, 260
MwoI GCNNNNNNNGC 6 cut(s) 33, 70, 84, 153, 214, 375
NciI CCSGG 2 cut(s) 310, 334
NdeII GATC 2 cut(s) 30, 261
NlaIV GGNNCC 3 cut(s) 50, 148, 171
NmeAIII GCCGAG 1 cut(s) 247
NruI TCGCGA 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 3 cut(s) 12, 162, 407
PkrI GCNGC 7 cut(s) 26, 48, 63, 66, 77, 155, 368
PleI GAGTC 2 cut(s) 283, 325
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 2 cut(s) 283, 325
Ppu21I YACGTR 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 357
PspCI CACGTG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 3 cut(s) 50, 148, 171
PspPI GGNCC 5 cut(s) 82, 251, 300, 312, 402
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 153
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
Rsr2I CGGWCCG 2 cut(s) 251, 312
RsrII CGGWCCG 2 cut(s) 251, 312
SacII CCGCGG 1 cut(s) 123
SatI GCNGC 7 cut(s) 25, 47, 62, 65, 76, 154, 367
Sau3AI GATC 2 cut(s) 30, 261
Sau96I GGNCC 5 cut(s) 82, 251, 300, 312, 402
SchI GAGTC 2 cut(s) 284, 326
ScrFI CCNGG 3 cut(s) 310, 334, 359
SduI GDGCHC 2 cut(s) 149, 174
SetI ASST 8 cut(s) 92, 102, 132, 155, 210, 294, 375, 393
SfaNI GCATC 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 123
SgrBI CCGCGG 1 cut(s) 123
SinI GGWCC 3 cut(s) 251, 300, 312
Sse9I AATT 1 cut(s) 444
StyD4I CCNGG 3 cut(s) 308, 332, 357
TaaI ACNGT 1 cut(s) 417
TaiI ACGT 3 cut(s) 92, 132, 375
TaqI TCGA 5 cut(s) 242, 285, 329, 393, 412
TaqII GACCGA 1 cut(s) 288
TasI AATT 1 cut(s) 444
TauI GCSGC 2 cut(s) 49, 67
TfiI GAWTC 3 cut(s) 12, 162, 407
TseI GCWGC 5 cut(s) 24, 61, 75, 153, 366
VpaK11BI GGWCC 3 cut(s) 251, 300, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.