Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003608

Physical Location & Seq

Genomic Coordinates Reverse (-)

33683348 .. 33685088

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G368100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCAGCCGGACTGGGAAAATGTAGCAAGATCCGCCACATTGTGAGGCTCCGCCAACTGCTGCGGCGGTGGCGCAGCAAGGCCCGCATGTCAGCCAATCGCATACCGTCGGATGTTCCCGCAGGACACGTGGCCGTCAGCGTGGGCAGCAGTTGCACCCGATTTGTGGTGCGCGCGTCGTACCTGAACCACCCCGTCTTCAAGAAGCTCCTTGTAGAAGCCGAGGAGGAGTACGGCTTCTCCAACCAAGGCCCGCTCGCGATACCCTGCGACGAGTCACTCTTCGAAGAGGTGCTCCGATTCATTTCTCGGTCCGAGTCCGGTGGGTCGACCCGGTTCGTCAATCTAGACGACTTCCAAAGATACTGCCACGCGGGCATCCGGAGTAACCTCGATTTCTGGGCCGATTCTCGACCGTTGCTTCGTGGATTTTCAGATAAAACAATTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

9.79

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19840 AT1G75590 AT5G10990
fragaria_vesca	FvH4_2g10760 FvH4_2g38740
malus_domestica	MD00G1067200.v1.1 MD08G1015100.v1.1 MD10G1061400.v1.1 MD15G1014300.v1.1
prunus_persica	Prupe.1G368100_v2.0.a1 Prupe.8G082200_v2.0.a1
pyrus_communis	pycom05g04450 pycom08g01350 pycom10g04730 pycom15g01240
rosa_chinensis	RchiOBHm_Chr6g0268541 RchiOBHm_Chr6g0302561
rosa_laevigata	RLG00000011161 RLG00000013903
rosa_multiflora	Rmu_co8217562.1_g000002 Rmu_sc0003473.1_g000013 Rmu_sc0008287.1_g000004 Rmu_sc0009580.1_g000002 Rmu_sc0012913.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165610 Rroxscaffold_7G00199740
rosa_rugosa	Rorug06G0043000 Rorug06G0315100
rosa_samantha	Rh6AG428400 Rh6BG474300 Rh6CG160400 Rh6CG440600 Rh6DG151900
rosa_wichuraiana	Rw6G014030 Rw6G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	4 cut(s)	174, 176, 260, 374
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	8 cut(s)	34, 52, 64, 67, 85, 120, 254, 374
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	132
AcvI	CACGTG	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	182, 233
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	381
AoxI	GGCC	4 cut(s)	81, 132, 250, 402
ApeKI	GCWGC	3 cut(s)	61, 75, 147
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AspLEI	GCGC	3 cut(s)	75, 174, 176
AspS9I	GGNCC	4 cut(s)	82, 251, 312, 402
AsuC2I	CCSGG	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	48, 87, 159
BceAI	ACGGC	2 cut(s)	119, 250
BcnI	CCSGG	1 cut(s)	334
BfaI	CTAG	1 cut(s)	347
BglI	GCCNNNNNGGC	1 cut(s)	375
BisI	GCNGC	4 cut(s)	62, 65, 76, 148
BlsI	GCNGC	4 cut(s)	63, 66, 77, 149
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	4 cut(s)	82, 251, 312, 402
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	334
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	222, 247
BsaWI	WCCGGW	2 cut(s)	320, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	222, 247
BseGI	GGATG	2 cut(s)	118, 378
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	18
BsePI	GCGCGC	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	239, 242
BseXI	GCAGC	3 cut(s)	48, 87, 159
Bsh1236I	CGCG	4 cut(s)	174, 176, 260, 374
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	4 cut(s)	83, 134, 252, 404
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	4 cut(s)	9, 321, 334, 382
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	4 cut(s)	83, 134, 252, 404
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp13I	TCCGGA	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	260
BspACI	CCGC	8 cut(s)	34, 52, 64, 67, 85, 120, 254, 374
BspANI	GGCC	4 cut(s)	83, 134, 252, 404
BspEI	TCCGGA	1 cut(s)	381
BspFNI	CGCG	4 cut(s)	174, 176, 260, 374
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	222, 247
BssHII	GCGCGC	1 cut(s)	172
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	2 cut(s)	108, 417
Bst6I	CTCTTC	2 cut(s)	282, 287
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	5 cut(s)	85, 174, 254, 258, 376
BstF5I	GGATG	2 cut(s)	118, 378
BstFNI	CGCG	4 cut(s)	174, 176, 260, 374
BstHHI	GCGC	3 cut(s)	75, 174, 176
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 70, 84, 147, 153, 375
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	332
BstUI	CGCG	4 cut(s)	174, 176, 260, 374
BstV1I	GCAGC	3 cut(s)	48, 87, 159
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	83, 134, 252, 404
BtsCI	GGATG	2 cut(s)	118, 378
BtuMI	TCGCGA	1 cut(s)	260
Cac8I	GCNNGC	5 cut(s)	85, 174, 254, 258, 376
CfoI	GCGC	3 cut(s)	75, 174, 176
Cfr13I	GGNCC	4 cut(s)	82, 251, 312, 402
CpoI	CGGWCCG	1 cut(s)	312
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	181, 232
CspI	CGGWCCG	1 cut(s)	312
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	2 cut(s)	181, 232
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	282, 287
EarI	CTCTTC	2 cut(s)	282, 287
EciI	GGCGGA	2 cut(s)	23, 41
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	312
Eco72I	CACGTG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 104
FatI	CATG	1 cut(s)	87
FauI	CCCGC	4 cut(s)	92, 127, 261, 367
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	4 cut(s)	62, 65, 76, 148
FokI	GGATG	2 cut(s)	125, 365
Fsp4HI	GCNGC	4 cut(s)	62, 65, 76, 148
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	3 cut(s)	74, 173, 175
GluI	GCNGC	4 cut(s)	62, 65, 76, 148
HaeIII	GGCC	4 cut(s)	83, 134, 252, 404
HapII	CCGG	4 cut(s)	9, 321, 334, 382
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	3 cut(s)	75, 174, 176
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	3 cut(s)	73, 172, 174
HinP1I	GCGC	3 cut(s)	73, 172, 174
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	4 cut(s)	275, 300, 317, 407
HpaII	CCGG	4 cut(s)	9, 321, 334, 382
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	4 cut(s)	112, 299, 316, 436
Hpy188III	TCNNGA	5 cut(s)	202, 259, 347, 382, 411
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	3 cut(s)	112, 181, 275
HpyCH4III	ACNGT	2 cut(s)	108, 417
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 70, 84, 147, 153, 375
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	3 cut(s)	73, 172, 174
Kpn2I	TCCGGA	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	54, 213, 300
LpnPI	CCDG	8 cut(s)	22, 108, 197, 280, 334, 347, 385, 395
Lsp1109I	GCAGC	3 cut(s)	48, 87, 159
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	276, 386
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	190, 274, 299
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	444
MlyI	GAGTC	2 cut(s)	284, 326
MmeI	TCCRAC	2 cut(s)	90, 267
MnlI	CCTC	5 cut(s)	39, 217, 220, 283, 401
MroI	TCCGGA	1 cut(s)	381
MspI	CCGG	4 cut(s)	9, 321, 334, 382
MspR9I	CCNGG	1 cut(s)	334
MvnI	CGCG	4 cut(s)	174, 176, 260, 374
MwoI	GCNNNNNNNGC	6 cut(s)	33, 70, 84, 147, 153, 375
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	50
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	276
NruI	TCGCGA	1 cut(s)	260
NspI	RCATGY	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	285
PauI	GCGCGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	300, 407
PkrI	GCNGC	4 cut(s)	63, 66, 77, 149
PleI	GAGTC	2 cut(s)	283, 325
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	2 cut(s)	283, 325
Ppu21I	YACGTR	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	4 cut(s)	82, 251, 312, 402
PsuI	RGATCY	1 cut(s)	30
PteI	GCGCGC	1 cut(s)	172
RruI	TCGCGA	1 cut(s)	260
RsaI	GTAC	2 cut(s)	182, 233
RsaNI	GTAC	2 cut(s)	181, 232
Rsr2I	CGGWCCG	1 cut(s)	312
RsrII	CGGWCCG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	328
SatI	GCNGC	4 cut(s)	62, 65, 76, 148
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	4 cut(s)	82, 251, 312, 402
SchI	GAGTC	2 cut(s)	284, 326
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	5 cut(s)	132, 186, 210, 294, 393
SfaNI	GCATC	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	1 cut(s)	312
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	8 cut(s)	34, 52, 64, 67, 85, 120, 254, 374
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	108, 417
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	285, 329, 393, 412
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	444
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	300, 407
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	3 cut(s)	61, 75, 147
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	312
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.