Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Reverse (-)

8130598 .. 8132435

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTGAAAACAAAGAAAGAAGATCTAAATCAATTTCTGATTCCTCGTCTCAACACCATCTACGAAACCCTCCAGTTGTTCGATGGAACAGCTTCTCCTACAGTGGAAAGAGTTAATTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGTGGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTCTTACTTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGGACCTACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAGATTGTTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAAGGATAAGAAGCCGTCTATTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGAAGGTTCCTGCAACAAACATTACTGCGATTGGTAGAGCTATTACACAGGTTGCGGTTTCCATGAAGGATGTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGTGAGGCATCTGGTGATAATATGTCTAGTGATGATGATGATGATGACGATTTAGGCGATGATTTGTCTCCTGAAGAAATGGAAGTTGCTACAATGGTTACTGAGATTGTCTCTGAAACTATCATGGTGATAAAAGAACTCATTCGAGTTATCACTGGTATGATTAAGATGGAGAATCCAAAGGATAATAGTGGGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGTGTCAAGGAACTGGTGTACAAATCGATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGATGAACAAGATGAAGCAAACAGTGAAGGTTATACAGGGAAATCTAGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTTCAGACGGCTTTTCGGGAGCTTGCGGGAAGCTGCGAAACTCCTTGAAACATATGGAAACTGAATTGGATAAAAGATGTGAAGCTGAGCTAGTAGTTGAAATGCAGAATGTTACTCTTGACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

357

Amino Acids

39.4

Weight (kDa)

4.67

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	23 - 167	1.2e-51	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	185 - 287	8.3e-31	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	226
AciI	CCGC	4 cut(s)	416, 512, 857, 972
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	914
AcuI	CTGAAG	6 cut(s)	116, 331, 669, 818, 933, 945
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	1 cut(s)	249
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	8 cut(s)	238, 248, 306, 457, 920, 940, 994, 1046
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AleI	CACNNNNGTG	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	79, 111
Alw26I	GTCTC	4 cut(s)	53, 212, 648, 691
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	418, 979
ApoI	RAATTY	1 cut(s)	914
Asp700I	GAANNNNTTC	2 cut(s)	91, 717
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	4 cut(s)	16, 137, 602, 715
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	430, 966
BccI	CCATC	3 cut(s)	65, 77, 739
BceAI	ACGGC	2 cut(s)	391, 970
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	4 cut(s)	53, 212, 648, 691
BfaI	CTAG	4 cut(s)	342, 603, 908, 1037
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	2 cut(s)	419, 980
BlpI	GCTNAGC	1 cut(s)	1032
BlsI	GCNGC	2 cut(s)	420, 981
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	1 cut(s)	593
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpmI	CTGGAG	2 cut(s)	56, 207
Bpu1102I	GCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	1 cut(s)	806
Bsa29I	ATCGAT	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	5 cut(s)	73, 190, 450, 736, 820
Bse8I	GATNNNNATC	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	669, 1023
BseNI	ACTGG	5 cut(s)	73, 190, 450, 736, 820
BseXI	GCAGC	2 cut(s)	430, 966
BshVI	ATCGAT	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	4 cut(s)	53, 212, 648, 691
BsmBI	CGTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	820
Bsp143I	GATC	3 cut(s)	22, 142, 383
Bsp1720I	GCTNAGC	1 cut(s)	1032
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	4 cut(s)	416, 512, 857, 972
BspCNI	CTCAG	2 cut(s)	670, 1024
BspDI	ATCGAT	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	391
BsrGI	TGTACA	1 cut(s)	820
BsrI	ACTGG	5 cut(s)	73, 190, 450, 736, 820
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	22, 142, 383
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	103, 886, 1070
Bst6I	CTCTTC	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	558, 970
BstDEI	CTNAG	3 cut(s)	533, 678, 1032
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	3 cut(s)	25, 145, 386
BstMAI	GTCTC	4 cut(s)	53, 212, 648, 691
BstMBI	GATC	3 cut(s)	22, 142, 383
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 790, 799
BstNSI	RCATGY	2 cut(s)	317, 447
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	430, 966
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	828
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	3 cut(s)	108, 729, 891
Cac8I	GCNNGC	2 cut(s)	558, 970
Cfr13I	GGNCC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	828
Csp6I	GTAC	1 cut(s)	821
CviAII	CATG	5 cut(s)	269, 314, 444, 520, 700
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	3 cut(s)	533, 678, 1032
DpnI	GATC	3 cut(s)	24, 144, 385
DpnII	GATC	3 cut(s)	22, 142, 383
DrdI	GACNNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
Eco130I	CCWWGG	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	6 cut(s)	116, 331, 669, 818, 933, 945
Eco88I	CYCGRG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	5 cut(s)	272, 317, 447, 523, 703
FatI	CATG	5 cut(s)	268, 313, 443, 519, 699
FauI	CCCGC	1 cut(s)	965
FauNDI	CATATG	1 cut(s)	999
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	419, 980
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	419, 980
FspBI	CTAG	4 cut(s)	342, 603, 908, 1037
GluI	GCNGC	2 cut(s)	419, 980
GsuI	CTGGAG	2 cut(s)	56, 207
Hin1II	CATG	5 cut(s)	272, 317, 447, 523, 703
HinfI	GANTC	7 cut(s)	40, 191, 206, 227, 338, 751, 779
HphI	GGTGA	4 cut(s)	16, 137, 602, 715
Hpy166II	GTNNAC	1 cut(s)	821
Hpy188I	TCNGA	7 cut(s)	39, 135, 142, 350, 574, 691, 952
Hpy188III	TCNNGA	6 cut(s)	426, 457, 647, 908, 963, 1064
Hpy8I	GTNNAC	1 cut(s)	821
HpyAV	CCTTC	5 cut(s)	254, 388, 454, 517, 883
HpyCH4III	ACNGT	3 cut(s)	103, 886, 1070
HpyCH4V	TGCA	3 cut(s)	358, 470, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 790, 799
HpyF3I	CTNAG	3 cut(s)	533, 678, 1032
Hsp92II	CATG	5 cut(s)	272, 317, 447, 523, 703
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	22, 142, 383
LmnI	GCTCC	1 cut(s)	965
Lsp1109I	GCAGC	2 cut(s)	430, 966
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	4 cut(s)	342, 603, 908, 1037
MaeIII	GTNAC	2 cut(s)	673, 1057
MalI	GATC	3 cut(s)	24, 144, 385
MboI	GATC	3 cut(s)	22, 142, 383
MboII	GAAGA	6 cut(s)	32, 122, 294, 662, 939, 952
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	5 cut(s)	32, 115, 330, 914, 1010
MlyI	GAGTC	2 cut(s)	236, 788
MnlI	CCTC	5 cut(s)	54, 80, 158, 373, 574
MroXI	GAANNNNTTC	2 cut(s)	91, 717
MseI	TTAA	4 cut(s)	114, 213, 324, 741
MslI	CAYNNNNRTG	2 cut(s)	167, 734
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	273, 790, 799
NcoI	CCATGG	1 cut(s)	268
NdeI	CATATG	1 cut(s)	999
NdeII	GATC	3 cut(s)	22, 142, 383
NlaIII	CATG	5 cut(s)	272, 317, 447, 523, 703
NlaIV	GGNNCC	1 cut(s)	465
NspI	RCATGY	2 cut(s)	317, 447
OliI	CACNNNNGTG	1 cut(s)	167
PciI	ACATGT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	2 cut(s)	91, 717
PfeI	GAWTC	5 cut(s)	40, 191, 206, 338, 751
PkrI	GCNGC	2 cut(s)	420, 981
PleI	GAGTC	2 cut(s)	235, 787
PpsI	GAGTC	2 cut(s)	235, 787
PscI	ACATGT	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
RseI	CAYNNNNRTG	2 cut(s)	167, 734
SaqAI	TTAA	4 cut(s)	114, 213, 324, 741
SatI	GCNGC	2 cut(s)	419, 980
Sau3AI	GATC	3 cut(s)	22, 142, 383
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	2 cut(s)	236, 788
SfaNI	GCATC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	167, 734
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	5 cut(s)	32, 115, 330, 914, 1010
SsiI	CCGC	4 cut(s)	416, 512, 857, 972
SspMI	CTAG	4 cut(s)	342, 603, 908, 1037
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	103, 886, 1070
TaqI	TCGA	3 cut(s)	81, 721, 828
TasI	AATT	5 cut(s)	32, 115, 330, 914, 1010
TatI	WGTACW	1 cut(s)	820
TfiI	GAWTC	5 cut(s)	40, 191, 206, 338, 751
Tru1I	TTAA	4 cut(s)	114, 213, 324, 741
Tru9I	TTAA	4 cut(s)	114, 213, 324, 741
TscAI	CASTG	3 cut(s)	108, 736, 891
TseI	GCWGC	2 cut(s)	418, 979
TspDTI	ATGAA	4 cut(s)	536, 557, 881, 890
TspRI	CASTG	3 cut(s)	108, 736, 891
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	914
XbaI	TCTAGA	1 cut(s)	907
XceI	RCATGY	2 cut(s)	317, 447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	91, 717
XspI	CTAG	4 cut(s)	342, 603, 908, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.