Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

56226397 .. 56228597

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCAGTTCCCCTTCTTCTTCATAAAACCCCAAACCCTGAGAGCTCAAGCTGTTTCAGCAGTAGCACCAATTCCTGCTCCGCAGAAATGGGTAGAGCCGAGAAAGAGCAACTGAACCGAACTCTGAACCAGCACCTCAACACCGTCCATGAAATCTTAGAGGTGTTGGATCAAAACCCACCTTCTACACTTGAGAAGGTGAGCTGGGAAGAGGTCGTCCAGATGGGTAACCAAGTCTCCAAACAAGCCACCATTGTGGGAATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGCTTGAAGAAAACATGACTGCCTACTTTAATATGCTACAAGGTTTTCTTCTTCTTTCACATGGGAGTATGGTTGGTGCAGGGCCTACTCTTTCTTCTTATGTCCACGCATCTGTAAAGCAAGTTGTTGACTCCAGTTTTAAGTTGATGAAGGAATCTATCTTGTTGTATGGAGCAGTGAATAAAGACTGGAAACTGTCGATTCCACAGTTGGCTGGTGCAGTATGGGAAGCCTGTTCTGCTCTTAAGAAGACCCCTGCCACAAATGTCACAGCAATTGGGCGAGCGATGACGCAGGTTGCAGTCACCATGAAAGATGTACTTCGTGAGATGAAGGAGCTTAAGCCGGCTACTGACCCAACAGCAGATGAGACTGAAGCAGAAATTGAGCCCCATGATGATGAAACTTCGAGTGATAGTGATCTGGGAAATGACTTGTCACCTGAAGAGATGAAAGTTGCTGAGCTAGCAATTGCAGCCGTGTCTGAGACTCTTGTAGTGATAAAGGAACTAATTCGTACCATCACAAGTTTGCTTAAACGGGAAAGTCCAAATGACAGTAGTCTTGTGGATTCTCTGGAGAAACTGTTGAAGATGTGTCAAGGAATTGGAGAACAGATAGATGAGCTTGGAGCTTGTCTCTACCCCCGCAAGAGGTTCCCACTATCAAGGCAGTATTGGAGAAAATGTCGAGCCTTACTGATGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

334

Amino Acids

36.88

Weight (kDa)

5.18

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	71 - 214	6.7e-46	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	231 - 319	1.4e-20	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AciI	CCGC	2 cut(s)	81, 943
AclWI	GGATC	1 cut(s)	177
AcuI	CTGAAG	2 cut(s)	690, 759
AfaI	GTAC	2 cut(s)	615, 814
AfiI	CCNNNNNNNGG	1 cut(s)	948
AflII	CTTAAG	2 cut(s)	539, 635
AgsI	TTSAA	2 cut(s)	302, 886
AjiI	CACGTC	1 cut(s)	1002
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	8 cut(s)	45, 51, 204, 290, 634, 760, 922, 929
AluI	AGCT	8 cut(s)	45, 51, 204, 290, 634, 760, 922, 929
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	4 cut(s)	241, 659, 776, 938
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	770
Asp700I	GAANNNNTTC	1 cut(s)	807
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	211, 592, 726
AsuNHI	GCTAGC	1 cut(s)	760
BanII	GRGCYC	2 cut(s)	47, 687
BbsI	GAAGAC	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	2 cut(s)	217, 824
BceAI	ACGGC	1 cut(s)	758
BcoDI	GTCTC	4 cut(s)	241, 659, 776, 938
BfaI	CTAG	2 cut(s)	291, 761
BfrI	CTTAAG	2 cut(s)	539, 635
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	1 cut(s)	771
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	1 cut(s)	772
BmgBI	CACGTC	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	953
BmsI	GCATC	1 cut(s)	413
BmtI	GCTAGC	1 cut(s)	764
BoxI	GACNNNNGTC	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	918, 950
BpmI	CTGGAG	2 cut(s)	412, 893
Bpu1102I	GCTNAGC	1 cut(s)	756
BpuEI	CTTGAG	2 cut(s)	31, 212
BsaBI	GATNNNNATC	1 cut(s)	714
BsaXI	ACNNNNNCTCC	8 cut(s)	221, 251, 267, 297, 866, 896, 967, 997
Bsc4I	CCNNNNNNNGG	1 cut(s)	948
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	429, 488
Bse8I	GATNNNNATC	1 cut(s)	714
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	1 cut(s)	948
BseMII	CTCAG	3 cut(s)	30, 747, 771
BseNI	ACTGG	2 cut(s)	429, 488
BseXI	GCAGC	1 cut(s)	782
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	393, 534
BshFI	GGCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	948
BsmAI	GTCTC	4 cut(s)	241, 659, 776, 938
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	47, 687
Bsp143I	GATC	2 cut(s)	169, 715
Bsp1720I	GCTNAGC	1 cut(s)	756
BspACI	CCGC	2 cut(s)	81, 943
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	3 cut(s)	31, 748, 772
BspLI	GGNNCC	1 cut(s)	953
BspMI	ACCTGC	1 cut(s)	580
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	2 cut(s)	539, 635
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	429, 488
BssAI	RCCGGY	1 cut(s)	640
BssMI	GATC	2 cut(s)	169, 715
Bst4CI	ACNGT	5 cut(s)	145, 492, 504, 854, 882
Bst6I	CTCTTC	2 cut(s)	204, 735
BstAFI	CTTAAG	2 cut(s)	539, 635
BstC8I	GCNNGC	3 cut(s)	579, 642, 762
BstDEI	CTNAG	4 cut(s)	39, 157, 756, 780
BstEII	GGTNACC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	172, 718
BstMAI	GTCTC	4 cut(s)	241, 659, 776, 938
BstMBI	GATC	2 cut(s)	169, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 533, 761, 770
BstPAI	GACNNNNGTC	1 cut(s)	855
BstPI	GGTNACC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	1002
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	3 cut(s)	579, 642, 762
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	377
CseI	GACGC	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	614, 813
CviAII	CATG	5 cut(s)	149, 310, 356, 604, 689
CviQI	GTAC	2 cut(s)	614, 813
DdeI	CTNAG	4 cut(s)	39, 157, 756, 780
DpnI	GATC	2 cut(s)	171, 717
DpnII	GATC	2 cut(s)	169, 715
Eam1104I	CTCTTC	2 cut(s)	204, 735
EarI	CTCTTC	2 cut(s)	204, 735
Ecl136II	GAGCTC	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	47, 687
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	690, 759
Eco91I	GGTNACC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	47, 687
FaeI	CATG	5 cut(s)	152, 313, 359, 607, 692
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 600, 632
FatI	CATG	5 cut(s)	148, 309, 355, 603, 688
FauI	CCCGC	1 cut(s)	950
Fnu4HI	GCNGC	1 cut(s)	771
FriOI	GRGCYC	2 cut(s)	47, 687
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	2 cut(s)	291, 761
GluI	GCNGC	1 cut(s)	771
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	412, 893
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	1 cut(s)	641
HgaI	GACGC	1 cut(s)	595
Hin1II	CATG	5 cut(s)	152, 313, 359, 607, 692
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	425, 449, 496, 784, 866
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	3 cut(s)	211, 592, 726
Hpy166II	GTNNAC	2 cut(s)	400, 424
Hpy188I	TCNGA	2 cut(s)	126, 781
Hpy188III	TCNNGA	3 cut(s)	220, 620, 872
Hpy8I	GTNNAC	2 cut(s)	400, 424
HpyAV	CCTTC	5 cut(s)	23, 190, 192, 439, 622
HpyCH4III	ACNGT	5 cut(s)	145, 492, 504, 854, 882
HpyCH4IV	ACGT	1 cut(s)	1001
HpyCH4V	TGCA	4 cut(s)	374, 515, 596, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 533, 761, 770
HpyF3I	CTNAG	4 cut(s)	39, 157, 756, 780
HpySE526I	ACGT	1 cut(s)	1001
Hsp92II	CATG	5 cut(s)	152, 313, 359, 607, 692
KroI	GCCGGC	1 cut(s)	640
KroNI	GCCGGC	1 cut(s)	642
Kzo9I	GATC	2 cut(s)	169, 715
LmnI	GCTCC	4 cut(s)	83, 467, 631, 926
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	2 cut(s)	291, 761
MaeII	ACGT	1 cut(s)	1001
MaeIII	GTNAC	4 cut(s)	227, 562, 598, 732
MalI	GATC	2 cut(s)	171, 717
MboI	GATC	2 cut(s)	169, 715
MfeI	CAATTG	2 cut(s)	570, 765
MhlI	GDGCHC	2 cut(s)	47, 687
MluCI	AATT	6 cut(s)	70, 570, 678, 765, 807, 900
MlyI	GAGTC	2 cut(s)	419, 778
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	146, 154, 205, 942
MroNI	GCCGGC	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	5 cut(s)	324, 435, 540, 636, 831
MslI	CAYNNNNRTG	2 cut(s)	254, 693
MspCI	CTTAAG	2 cut(s)	539, 635
MspI	CCGG	1 cut(s)	641
MunI	CAATTG	2 cut(s)	570, 765
MwoI	GCNNNNNNNGC	4 cut(s)	57, 533, 761, 770
NaeI	GCCGGC	1 cut(s)	642
NdeII	GATC	2 cut(s)	169, 715
NgoMIV	GCCGGC	1 cut(s)	640
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	5 cut(s)	152, 313, 359, 607, 692
NlaIV	GGNNCC	1 cut(s)	953
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	562, 598, 732
OliI	CACNNNNGTG	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	449, 496, 866
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	2 cut(s)	419, 778
PpsI	GAGTC	2 cut(s)	419, 778
PshAI	GACNNNNGTC	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	953
PspPI	GGNCC	1 cut(s)	377
RsaI	GTAC	2 cut(s)	615, 814
RsaNI	GTAC	2 cut(s)	614, 813
RseI	CAYNNNNRTG	2 cut(s)	254, 693
SacI	GAGCTC	1 cut(s)	47
SaqAI	TTAA	5 cut(s)	324, 435, 540, 636, 831
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	2 cut(s)	169, 715
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	419, 778
SduI	GDGCHC	2 cut(s)	47, 687
SfaNI	GCATC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	254, 693
SmlI	CTYRAG	4 cut(s)	46, 191, 539, 635
SmoI	CTYRAG	4 cut(s)	46, 191, 539, 635
Sse9I	AATT	6 cut(s)	70, 570, 678, 765, 807, 900
SsiI	CCGC	2 cut(s)	81, 943
SspMI	CTAG	2 cut(s)	291, 761
SstI	GAGCTC	1 cut(s)	47
TaaI	ACNGT	5 cut(s)	145, 492, 504, 854, 882
TaiI	ACGT	1 cut(s)	1004
TaqI	TCGA	3 cut(s)	494, 704, 985
TasI	AATT	6 cut(s)	70, 570, 678, 765, 807, 900
TatI	WGTACW	1 cut(s)	613
TfiI	GAWTC	3 cut(s)	449, 496, 866
Tru1I	TTAA	5 cut(s)	324, 435, 540, 636, 831
Tru9I	TTAA	5 cut(s)	324, 435, 540, 636, 831
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	3 cut(s)	562, 598, 732
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	3 cut(s)	562, 598, 732
TspDTI	ATGAA	7 cut(s)	11, 165, 458, 620, 641, 711, 761
TspRI	CASTG	1 cut(s)	477
Vha464I	CTTAAG	2 cut(s)	539, 635
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	291, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.