pycom16g02930

cyclin-D1-binding protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002414
Physical Location & Seq
Forward (+)
1850932 .. 1851489
558 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02930.1

Sequence Viewer

Length: 558 bp
ATGAAGGAGCTTAAGCCAGCTTCCTCTGACCCGACAGATGAATCCTCTATTGAGCCTTCTACTGAAGCAGAGATTGAACCCGATGATGATGAAATTTTAAGTGATGGTGATCTGGGCAACGACTTGTCACCTGAAGAGATGAGAGTTTCTCAATTGGCAATTGCCGTTGTGTCAGAGGCTCTTGTGGTAATAAAGGAACTAATTCGCACCATCAGCGGTTTGCTTAAACTGGAAAACCCAAACGGCAGCAGTAATCTTGTGGATTCCTTGGAGAAATTGTTGAATATGTGTAAAGAAATCGGAATACAAATAGACGAGCTTGGAGCTTGTTTATATCCCCCACAAGAGGTTCCGGCTATCAACGCAGCATCCGAGAAAATCTCCAGTTTTGTTGATGATATGCAATCCGAATTGCAGAATCTCAACGGAAATCTGGAAGCTTTTAGTCAGGCGTGCAATTGTTTGAAGAGTTCATTGAGACAGCTCGAATCTGAAGTGGCCTCTCCTAATACTGTTGATTTAGAAACCAGTGTGCAGAATATTGATTTGAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCIP

Protein Analysis

186

Amino Acids

19.96

Weight (kDa)

4.05

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCIP_C PF20936 28 - 135 1.2e-25 Grap2 and cyclin-D-interacting, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 3 cut(s) 84, 153, 513
AfiI CCNNNNNNNGG 1 cut(s) 346
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 4 cut(s) 77, 283, 466, 550
AluBI AGCT 6 cut(s) 10, 20, 319, 326, 440, 484
AluI AGCT 6 cut(s) 10, 20, 319, 326, 440, 484
Alw26I GTCTC 1 cut(s) 472
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 2 cut(s) 246, 365
ApoI RAATTY 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 119, 120
BbvI GCAGC 2 cut(s) 258, 377
BccI CCATC 2 cut(s) 98, 218
BceAI ACGGC 2 cut(s) 149, 259
BcoDI GTCTC 1 cut(s) 472
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 247, 366
BlsI GCNGC 2 cut(s) 248, 367
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 1 cut(s) 377
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 365, 397
BpmI CTGGAG 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 3 cut(s) 234, 384, 528
Bse8I GATNNNNATC 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 368
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 346
BseNI ACTGG 3 cut(s) 234, 384, 528
BseXI GCAGC 2 cut(s) 258, 377
BsgI GTGCAG 1 cut(s) 554
BshFI GGCC 1 cut(s) 500
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 472
BsnI GGCC 1 cut(s) 500
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 351
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 3 cut(s) 234, 384, 528
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 514, 554
Bst6I CTCTTC 2 cut(s) 129, 461
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 18, 454
BstF5I GGATG 1 cut(s) 368
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 213, 362
BstV1I GCAGC 2 cut(s) 258, 377
BsuRI GGCC 1 cut(s) 500
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 535
Cac8I GCNNGC 2 cut(s) 18, 454
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 129, 461
EarI CTCTTC 2 cut(s) 129, 461
Eco130I CCWWGG 1 cut(s) 267
Eco57I CTGAAG 3 cut(s) 84, 153, 513
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaiI YATR 3 cut(s) 287, 334, 401
Fnu4HI GCNGC 2 cut(s) 247, 366
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 247, 366
GluI GCNGC 2 cut(s) 247, 366
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 4 cut(s) 41, 263, 418, 488
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 119, 120
Hpy188I TCNGA 6 cut(s) 28, 175, 302, 373, 409, 493
Hpy188III TCNNGA 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 514, 554
HpyCH4V TGCA 4 cut(s) 403, 415, 456, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 362
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 7, 323
LpnPI CCDG 9 cut(s) 30, 98, 144, 215, 366, 397, 419, 434, 541
Lsp1109I GCAGC 2 cut(s) 258, 377
LweI GCATC 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 126
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 146, 478
MfeI CAATTG 3 cut(s) 152, 159, 457
MluCI AATT 7 cut(s) 93, 152, 159, 201, 275, 410, 457
MnlI CCTC 5 cut(s) 34, 55, 169, 340, 511
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 3 cut(s) 12, 98, 225
MspA1I CMGCKG 1 cut(s) 216
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 353
MunI CAATTG 3 cut(s) 152, 159, 457
MwoI GCNNNNNNNGC 2 cut(s) 213, 362
NdeII GATC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 4 cut(s) 41, 263, 418, 488
PkrI GCNGC 2 cut(s) 248, 367
PspN4I GGNNCC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 12, 98, 225
SatI GCNGC 2 cut(s) 247, 366
Sau3AI GATC 1 cut(s) 109
SetI ASST 8 cut(s) 12, 22, 133, 321, 328, 351, 442, 486
SfaNI GCATC 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 7 cut(s) 93, 152, 159, 201, 275, 410, 457
SsiI CCGC 1 cut(s) 216
SspI AATATT 1 cut(s) 541
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 514, 554
TaqI TCGA 1 cut(s) 486
TasI AATT 7 cut(s) 93, 152, 159, 201, 275, 410, 457
TfiI GAWTC 4 cut(s) 41, 263, 418, 488
Tru1I TTAA 3 cut(s) 12, 98, 225
Tru9I TTAA 3 cut(s) 12, 98, 225
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 2 cut(s) 246, 365
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 4 cut(s) 17, 54, 105, 462
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 535
Vha464I CTTAAG 1 cut(s) 11
XapI RAATTY 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.