MD13G1032100.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
2285717 .. 2292130
6414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1032100.v1.1.491

Sequence Viewer

Length: 1437 bp
ATGGAGAAGATTTTGTTGATAAAAGATGAGGGAGGAGAAGGAGAAGGTCTTGTGAGGAGGAGACAATGCGGTGCGTTTGGAGGGGAAGTGAAGCGGTTGGGGTACATAGCAGCGCCGATGGTGGCGGTGAATTTGTCACAGTACTTTTTGCAAATAATTTCAATTATGATGGTCGGTCATCTGGGCCAGCTCTCTCTTTCGAGCACCGCCATTGCCATCTCCTTCTGCGCCGTCTCCGGCTTCAGTCTTCTCTTTGGAATGGCAAGTGCACTGGAAACTCTCTCTGGTCAAGCATATGGAGCTCAACAATATAAACAACTAGGACTTCAAATAAACACTGCCATTTTCTCCCTATTCCTAGTTTGTCTCCCTCTGTCTCTTGTGTGGATCTACATGGGAAACATACTGGTTTTCTTGGGACAAGACCCTCAAATATCCCATGGAGCCGGTAAGTTTGCGAGGATGCTCTTACCCGCTCTCTTCGCTTACGCAGCTCTTCAGCCTCTTTGTAAATACCTTCAGACGCAAAGCTTGATCATTCCCTTGCTTGTGAGCTCTTTTGCCTGTCTGTGTTTCCACATTCCGTTTTGTTGGCTTATGGTGTTCAAGTCTGGACAAGGACACCTTGGGGCAGCATTGGCCATCGGTACGTCCTATTGGTTAAATGTGATTCTACTCTTACTGTACGTTAAGTACTCTGCTGCCTGTGCAAGTACTCGGGTTCCAATTTCTCTTGAGCTGTTTCGAGGCATTGGAGAATTCTTGCGCTTTGCAGTTCCGTCTGCTGTAATGATTTGCCTCGAATGGTGGTCGTTTGAGCTCCTTACCTTGCTGGCTGGTTTTCTACCAAATCCGGAGCTTGAAACTTCGGTTTTATCTGTCTGTTTGGCAACCATCTCATCGCTGTATACAATACCAGAATCACTTGGTGCAGCAGTAAGCACTAGGGTTTCAAATGAATTAGGAGCCGGGAACCCCCAAGCAGCGCGATTAGCTGTTGGTGCTGTTATGTTTCTTACAGTCTCCGAGGCCGTTCTTATAAGCACAACTGTCTTTGCCACCCGCTCTATTTTTGGCTACATTTTCAGCAATGACAAGGAAGTTGTGGACTATGTCACTTCCATGGCTCCTCTGATTTGCCTAGCAGTTATATCCAACAGCTTACATGGCGTTCTTTCTGGTATTGCTAGGGGATGTGGGTGGCAGGACTTGGCAATGTATGTCAACCTTGGCGCGTACTATCTGTTTGGGATTCCGGTTGCAGCCACATTGTGCTTCTGGTTAGATTTAAGAGGAAAGGGGCTCTGGATTGGAATACAAGTCGGTTCATTTCTGCAGGCAGCTCTTTACTCTGTCATAACAGGTTGTACAAACTGGGAAGAAAAGGCAAGTAAGGCAAGGGAGAGGATATTTTTGGAAAGTTCTTTAGTAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

479

Amino Acids

51.62

Weight (kDa)

7.44

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 39 - 199 2.9e-32 MatE
MatE PF01554 260 - 422 3.8e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
AccBSI CCGCTC 2 cut(s) 476, 1065
AccI GTMKAC 1 cut(s) 908
AccII CGCG 2 cut(s) 988, 1235
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 6 cut(s) 69, 94, 125, 207, 474, 1063
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 2 cut(s) 130, 758
AcuI CTGAAG 3 cut(s) 226, 482, 503
AdeI CACNNNGTG 2 cut(s) 929, 1272
AfaI GTAC 8 cut(s) 104, 143, 649, 686, 695, 715, 1238, 1369
AgsI TTSAA 5 cut(s) 162, 329, 607, 863, 954
Alw21I GWGCWC 5 cut(s) 206, 271, 304, 557, 822
Alw26I GTCTC 5 cut(s) 55, 238, 371, 381, 1027
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 717
Aor13HI TCCGGA 1 cut(s) 853
AoxI GGCC 3 cut(s) 184, 639, 1029
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 8 cut(s) 110, 491, 632, 701, 932, 983, 1262, 1340
ApoI RAATTY 2 cut(s) 130, 758
AspLEI GCGC 5 cut(s) 115, 230, 768, 988, 1235
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 970
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 641
BanII GRGCYC 4 cut(s) 304, 557, 822, 1305
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 5 cut(s) 206, 271, 304, 557, 822
BbvI GCAGC 8 cut(s) 122, 503, 644, 688, 944, 995, 1274, 1352
BccI CCATC 5 cut(s) 112, 163, 224, 650, 902
BceAI ACGGC 2 cut(s) 215, 1016
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 1 cut(s) 970
BcoDI GTCTC 5 cut(s) 55, 238, 371, 381, 1027
BfaI CTAG 5 cut(s) 320, 359, 945, 1142, 1188
BfmI CTRYAG 1 cut(s) 1334
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 8 cut(s) 111, 492, 633, 702, 933, 984, 1263, 1341
BlsI GCNGC 8 cut(s) 112, 493, 634, 703, 934, 985, 1264, 1342
BmcAI AGTACT 3 cut(s) 143, 695, 715
Bme1390I CCNGG 1 cut(s) 970
BmeT110I CYCGRG 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 5 cut(s) 445, 723, 967, 974, 1128
BmrFI CCNGG 1 cut(s) 970
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 1384
BpiI GAAGAC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 970
BsaJI CCNNGG 5 cut(s) 439, 625, 1026, 1122, 1228
BsaWI WCCGGW 2 cut(s) 853, 1255
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 3 cut(s) 276, 411, 1379
Bse3DI GCAATG 3 cut(s) 210, 1096, 1221
BseAI TCCGGA 1 cut(s) 853
BseDI CCNNGG 5 cut(s) 439, 625, 1026, 1122, 1228
BseGI GGATG 2 cut(s) 468, 1199
BseMI GCAATG 3 cut(s) 210, 1096, 1221
BseNI ACTGG 3 cut(s) 276, 411, 1379
BseRI GAGGAG 4 cut(s) 48, 70, 73, 1119
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 8 cut(s) 122, 503, 644, 688, 944, 995, 1274, 1352
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 2 cut(s) 988, 1235
BshFI GGCC 3 cut(s) 186, 641, 1031
BsiHKAI GWGCWC 5 cut(s) 206, 271, 304, 557, 822
BsiHKCI CYCGRG 1 cut(s) 717
BsiSI CCGG 5 cut(s) 237, 447, 854, 969, 1256
BslFI GGGAC 1 cut(s) 432
BsmAI GTCTC 5 cut(s) 55, 238, 371, 381, 1027
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 3 cut(s) 186, 641, 1031
BsoBI CYCGRG 1 cut(s) 717
Bsp1286I GDGCHC 6 cut(s) 206, 271, 304, 557, 822, 1305
Bsp13I TCCGGA 1 cut(s) 853
Bsp1407I TGTACA 1 cut(s) 1367
Bsp143I GATC 2 cut(s) 387, 534
Bsp19I CCATGG 2 cut(s) 439, 1122
BspACI CCGC 6 cut(s) 69, 94, 125, 207, 474, 1063
BspANI GGCC 3 cut(s) 186, 641, 1031
BspEI TCCGGA 1 cut(s) 853
BspFNI CGCG 2 cut(s) 988, 1235
BspLI GGNNCC 5 cut(s) 445, 723, 967, 974, 1128
BspMAI CTGCAG 1 cut(s) 1338
BspPI GGATC 1 cut(s) 395
BspQI GCTCTTC 1 cut(s) 501
BsrBI CCGCTC 2 cut(s) 476, 1065
BsrDI GCAATG 3 cut(s) 210, 1096, 1221
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 1367
BsrI ACTGG 3 cut(s) 276, 411, 1379
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 5 cut(s) 439, 625, 1026, 1122, 1228
BssMI GATC 2 cut(s) 387, 534
BssNAI GTATAC 1 cut(s) 909
BssT1I CCWWGG 4 cut(s) 439, 625, 1122, 1228
Bst1107I GTATAC 1 cut(s) 909
Bst4CI ACNGT 4 cut(s) 141, 684, 1021, 1051
Bst6I CTCTTC 2 cut(s) 485, 501
BstAUI TGTACA 1 cut(s) 1367
BstC8I GCNNGC 3 cut(s) 188, 834, 1338
BstDSI CCRYGG 2 cut(s) 439, 1122
BstF5I GGATG 2 cut(s) 468, 1199
BstFNI CGCG 2 cut(s) 988, 1235
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 5 cut(s) 115, 230, 768, 988, 1235
BstKTI GATC 2 cut(s) 390, 537
BstMAI GTCTC 5 cut(s) 55, 238, 371, 381, 1027
BstMBI GATC 2 cut(s) 387, 534
BstMWI GCNNNNNNNGC 9 cut(s) 299, 482, 491, 638, 707, 992, 1001, 1167, 1394
BstSCI CCNGG 1 cut(s) 968
BstSFI CTRYAG 1 cut(s) 1334
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 2 cut(s) 988, 1235
BstV1I GCAGC 8 cut(s) 122, 503, 644, 688, 944, 995, 1274, 1352
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BstZ17I GTATAC 1 cut(s) 909
BsuRI GGCC 3 cut(s) 186, 641, 1031
BtgI CCRYGG 2 cut(s) 439, 1122
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 2 cut(s) 468, 1199
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 269, 336
Cac8I GCNNGC 3 cut(s) 188, 834, 1338
CfoI GCGC 5 cut(s) 115, 230, 768, 988, 1235
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 1 cut(s) 532
Csp6I GTAC 8 cut(s) 103, 142, 648, 685, 694, 714, 1237, 1368
CviAII CATG 4 cut(s) 394, 440, 1123, 1166
CviQI GTAC 8 cut(s) 103, 142, 648, 685, 694, 714, 1237, 1368
DpnI GATC 2 cut(s) 389, 536
DpnII GATC 2 cut(s) 387, 534
DraIII CACNNNGTG 2 cut(s) 929, 1272
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 2 cut(s) 485, 501
EarI CTCTTC 2 cut(s) 485, 501
Ecl136II GAGCTC 3 cut(s) 302, 555, 820
Eco130I CCWWGG 4 cut(s) 439, 625, 1122, 1228
Eco24I GRGCYC 4 cut(s) 304, 557, 822, 1305
Eco53kI GAGCTC 3 cut(s) 302, 555, 820
Eco57I CTGAAG 3 cut(s) 226, 482, 503
Eco88I CYCGRG 1 cut(s) 717
EcoICRI GAGCTC 3 cut(s) 302, 555, 820
EcoRI GAATTC 1 cut(s) 758
EcoT14I CCWWGG 4 cut(s) 439, 625, 1122, 1228
EcoT38I GRGCYC 4 cut(s) 304, 557, 822, 1305
ErhI CCWWGG 4 cut(s) 439, 625, 1122, 1228
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 4 cut(s) 397, 443, 1126, 1169
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 432
FatI CATG 4 cut(s) 393, 439, 1122, 1165
FauI CCCGC 2 cut(s) 481, 1070
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 534
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 8 cut(s) 111, 492, 633, 702, 933, 984, 1263, 1341
FokI GGATG 2 cut(s) 475, 1206
FriOI GRGCYC 4 cut(s) 304, 557, 822, 1305
Fsp4HI GCNGC 8 cut(s) 111, 492, 633, 702, 933, 984, 1263, 1341
FspBI CTAG 5 cut(s) 320, 359, 945, 1142, 1188
GlaI GCGC 5 cut(s) 114, 229, 767, 987, 1234
GluI GCNGC 8 cut(s) 111, 492, 633, 702, 933, 984, 1263, 1341
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 3 cut(s) 186, 641, 1031
HapII CCGG 5 cut(s) 237, 447, 854, 969, 1256
HgaI GACGC 1 cut(s) 532
HhaI GCGC 5 cut(s) 115, 230, 768, 988, 1235
Hin1II CATG 4 cut(s) 397, 443, 1126, 1169
Hin6I GCGC 5 cut(s) 113, 228, 766, 986, 1233
HinP1I GCGC 5 cut(s) 113, 228, 766, 986, 1233
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HindIII AAGCTT 1 cut(s) 529
HinfI GANTC 3 cut(s) 670, 920, 1252
HpaII CCGG 5 cut(s) 237, 447, 854, 969, 1256
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 4 cut(s) 269, 909, 1108, 1225
Hpy188I TCNGA 3 cut(s) 522, 1027, 1134
Hpy188III TCNNGA 4 cut(s) 612, 734, 854, 1306
Hpy8I GTNNAC 4 cut(s) 269, 909, 1108, 1225
HpyAV CCTTC 4 cut(s) 32, 38, 232, 527
HpyCH4III ACNGT 4 cut(s) 141, 684, 1021, 1051
HpyCH4IV ACGT 2 cut(s) 650, 687
HpyCH4V TGCA 7 cut(s) 151, 269, 710, 773, 932, 1262, 1336
HpyF10VI GCNNNNNNNGC 9 cut(s) 299, 482, 491, 638, 707, 992, 1001, 1167, 1394
HpySE526I ACGT 2 cut(s) 650, 687
Hsp92II CATG 4 cut(s) 397, 443, 1126, 1169
HspAI GCGC 5 cut(s) 113, 228, 766, 986, 1233
Kpn2I TCCGGA 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 2 cut(s) 387, 534
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 6 cut(s) 299, 443, 825, 856, 965, 1132
Lsp1109I GCAGC 8 cut(s) 122, 503, 644, 688, 944, 995, 1274, 1352
LweI GCATC 1 cut(s) 453
MaeI CTAG 5 cut(s) 320, 359, 945, 1142, 1188
MaeII ACGT 2 cut(s) 650, 687
MaeIII GTNAC 2 cut(s) 135, 1114
MalI GATC 2 cut(s) 389, 536
MbiI CCGCTC 2 cut(s) 476, 1065
MboI GATC 2 cut(s) 387, 534
MboII GAAGA 5 cut(s) 19, 239, 472, 488, 1391
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 6 cut(s) 206, 271, 304, 557, 822, 1305
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 6 cut(s) 130, 156, 162, 726, 758, 959
MluNI TGGCCA 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 1179
Mox20I TGGCCA 1 cut(s) 641
MroI TCCGGA 1 cut(s) 853
MscI TGGCCA 1 cut(s) 641
MseI TTAA 3 cut(s) 662, 690, 1289
MslI CAYNNNNRTG 1 cut(s) 1121
Msp20I TGGCCA 1 cut(s) 641
MspI CCGG 5 cut(s) 237, 447, 854, 969, 1256
MspR9I CCNGG 1 cut(s) 970
MvnI CGCG 2 cut(s) 988, 1235
MwoI GCNNNNNNNGC 9 cut(s) 299, 482, 491, 638, 707, 992, 1001, 1167, 1394
NciI CCSGG 1 cut(s) 970
NcoI CCATGG 2 cut(s) 439, 1122
NdeI CATATG 1 cut(s) 295
NdeII GATC 2 cut(s) 387, 534
NlaIII CATG 4 cut(s) 397, 443, 1126, 1169
NlaIV GGNNCC 5 cut(s) 445, 723, 967, 974, 1128
NmuCI GTSAC 2 cut(s) 135, 1114
PciSI GCTCTTC 1 cut(s) 501
PfeI GAWTC 3 cut(s) 670, 920, 1252
PflFI GACNNNGTC 1 cut(s) 1112
PkrI GCNGC 8 cut(s) 112, 493, 634, 703, 934, 985, 1264, 1342
PsiI TTATAA 1 cut(s) 1040
Psp124BI GAGCTC 3 cut(s) 304, 557, 822
PspN4I GGNNCC 5 cut(s) 445, 723, 967, 974, 1128
PspPI GGNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 1338
PsuI RGATCY 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 1112
RsaI GTAC 8 cut(s) 104, 143, 649, 686, 695, 715, 1238, 1369
RsaNI GTAC 8 cut(s) 103, 142, 648, 685, 694, 714, 1237, 1368
RseI CAYNNNNRTG 1 cut(s) 1121
SacI GAGCTC 3 cut(s) 304, 557, 822
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 3 cut(s) 662, 690, 1289
SatI GCNGC 8 cut(s) 111, 492, 633, 702, 933, 984, 1263, 1341
Sau3AI GATC 2 cut(s) 387, 534
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 3 cut(s) 143, 695, 715
ScrFI CCNGG 1 cut(s) 970
SduI GDGCHC 6 cut(s) 206, 271, 304, 557, 822, 1305
SfaNI GCATC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 1334
SmiMI CAYNNNNRTG 1 cut(s) 1121
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 6 cut(s) 130, 156, 162, 726, 758, 959
SsiI CCGC 6 cut(s) 69, 94, 125, 207, 474, 1063
SspMI CTAG 5 cut(s) 320, 359, 945, 1142, 1188
SstI GAGCTC 3 cut(s) 304, 557, 822
StyD4I CCNGG 1 cut(s) 968
StyI CCWWGG 4 cut(s) 439, 625, 1122, 1228
TaaI ACNGT 4 cut(s) 141, 684, 1021, 1051
TaiI ACGT 2 cut(s) 653, 690
TaqI TCGA 3 cut(s) 200, 745, 801
TaqII GACCGA 1 cut(s) 164
TasI AATT 6 cut(s) 130, 156, 162, 726, 758, 959
TatI WGTACW 4 cut(s) 141, 693, 713, 1367
TfiI GAWTC 3 cut(s) 670, 920, 1252
Tru1I TTAA 3 cut(s) 662, 690, 1289
Tru9I TTAA 3 cut(s) 662, 690, 1289
TscAI CASTG 2 cut(s) 276, 343
TseFI GTSAC 2 cut(s) 135, 1114
TseI GCWGC 8 cut(s) 110, 491, 632, 701, 932, 983, 1262, 1340
Tsp45I GTSAC 2 cut(s) 135, 1114
TspDTI ATGAA 2 cut(s) 972, 1317
TspGWI ACGGA 2 cut(s) 573, 768
TspRI CASTG 2 cut(s) 276, 343
Tth111I GACNNNGTC 1 cut(s) 1112
VneI GTGCAC 1 cut(s) 267
XapI RAATTY 2 cut(s) 130, 758
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 5 cut(s) 320, 359, 945, 1142, 1188
ZrmI AGTACT 3 cut(s) 143, 695, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.