Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Reverse (-)

54771990 .. 54774568

Gene Structure 2579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGCTTGAAGAAAACATGACTGCCTACTTTAATATGCTACGAGGTTTTCTTCTTCTTTCACATGGGAGTATGGTTGGTGCAGGGCCTACTCGTTCTTCTTGTGTCCACGCATCTGTAAAGCAAGTTGTTGACTCCAGTTTTAAGTTGATGAAGGAATCTATCTTGTTGTATGGAGCAGTGAATAAAGACTGGAAACTGTCGATTCCACAGTTGGCTGGTGCAGTATGGGAAGCCTGTTTTGCTCTTAAGAAGACCCCTGCCACAAATGTCATAGCAATTAGCTATTGTAATTGCTCTCTGTTTGTTATGGTGCAATTTAGTATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

8.67

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	1 - 105	1.4e-24	Grap2 and cyclin-D-interacting, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	2 cut(s)	29, 315
AluI	AGCT	2 cut(s)	29, 315
AoxI	GGCC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	116
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	2 cut(s)	168, 227
BseNI	ACTGG	2 cut(s)	168, 227
BsgI	GTGCAG	2 cut(s)	132, 273
BshFI	GGCC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	168, 227
Bst4CI	ACNGT	2 cut(s)	231, 243
BstAFI	CTTAAG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	2 cut(s)	49, 95
CviJI	RGCY	5 cut(s)	29, 118, 248, 266, 315
CviKI_1	RGCY	5 cut(s)	29, 118, 248, 266, 315
EcoO109I	RGGNCCY	1 cut(s)	116
FaeI	CATG	2 cut(s)	52, 98
FaiI	YATR	8 cut(s)	50, 68, 96, 104, 204, 259, 305, 341
FatI	CATG	2 cut(s)	48, 94
FspBI	CTAG	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	52, 98
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	164, 188, 235
Hpy166II	GTNNAC	2 cut(s)	139, 163
Hpy8I	GTNNAC	2 cut(s)	139, 163
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	231, 243
HpyCH4V	TGCA	3 cut(s)	113, 254, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	52, 98
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	6 cut(s)	99, 181, 208, 234, 280, 303
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	30
MboII	GAAGA	5 cut(s)	53, 74, 77, 120, 295
MluCI	AATT	3 cut(s)	309, 322, 347
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	3 cut(s)	63, 174, 279
MspCI	CTTAAG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	52, 98
PfeI	GAWTC	2 cut(s)	188, 235
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	63, 174, 279
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	158
SetI	ASST	3 cut(s)	31, 79, 317
SfaNI	GCATC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	309, 322, 347
SspMI	CTAG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	231, 243
TaqI	TCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	309, 322, 347
TfiI	GAWTC	2 cut(s)	188, 235
Tru1I	TTAA	3 cut(s)	63, 174, 279
Tru9I	TTAA	3 cut(s)	63, 174, 279
TscAI	CASTG	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	278
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.