Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

31225739 .. 31225978

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1231700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGATGCTGAGCTCTGCGGTTTCAGCTTTACTTCACATCCCACTCTGTTGGGTTCTCGTGTTTAAATCCGGACTTGGAGGCAGGGGAGCTGCCCTTGCATATTCAATCTCCTTTTGGATCAATGTGTTATTATTGGCTCTTTATGTCAAGTTCTCTTCGTCATGTGCGAAAACTTGGACAGGCTTTTCGAAGGAGGCCTTTCACAACGTTACTACATTCATTAGGCTCGCTGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

80

Amino Acids

8.61

Weight (kDa)

9.78

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	1 cut(s)	17
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	3 cut(s)	12, 26, 89
AluI	AGCT	3 cut(s)	12, 26, 89
Alw21I	GWGCWC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsuII	TTCGAA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	90
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	8
Bpu14I	TTCGAA	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	68
BseGI	GGATG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	69
BsnI	GGCC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	117
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	197
BspEI	TCCGGA	1 cut(s)	68
BspPI	GGATC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	188
BssMI	GATC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 95
BstV1I	GCAGC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	228
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	7 cut(s)	12, 26, 89, 137, 183, 197, 226
CviKI_1	RGCY	7 cut(s)	12, 26, 89, 137, 183, 197, 226
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DraI	TTTAAA	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	100, 144, 163
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	1 cut(s)	165
HpaII	CCGG	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 95
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	3 cut(s)	67, 82, 165
Lsp1109I	GCAGC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	14
MnlI	CCTC	2 cut(s)	71, 187
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	23, 95
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	14
Psp1406I	AACGTT	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	4 cut(s)	14, 28, 91, 210
SfuI	TTCGAA	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.