Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Reverse (-)

8132396 .. 8134388

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGGAAATCAAAGAAAAAGGTTCTAAATAAATCTCTGATTACTCATCCTAGCACCAGTGACGATACTCTCCAATTGTTCGATCCAACATCGTCTCCTACAAAGGAAAAAGTTAACTGGAACAATGTTCTTGGCATTTCTGATTACCTCTCTAAACAAGCCACCAGAGTGAAAACGCTATGGACTGGAGAAACTCCAAAAGCTGAATCAGTTAAGGAGACAATGGAGTCTTACTTCAAGGCTCTTCTAGGGTTTTTGCTCTGTTGTCATGGAAGCACTCTTGGTGCTGGTCCTACTTTGTCTTCAATCGTACACGGTTCTGTTAAGCAAATCGTTGACTCCAGCTTCAGATTGTTTCAGGGTTCTGTATCTCTTTACGATGGATCATATGAAAAGGGGGAAAAGCCGTCTATTTCGCAGCTTTCAGGAGCAGTTTTGGAGGCATGCTCTAGTTTCAAGAAGGTTCCTACAACAAACCTCATCGCGATTGGCAGTGCTATTTCTCAGGTTTCGGTTATCATGAAGGATGTTCTTAATGAGATGAAAAAAGTGAAACCAGCTTGTCCTTCAAGTGAGGGTGAGGCATCTGGTGATGATTTTTCTCCTGAGCAAATAGAAGTTGCTAAAATGGTTGCTGACATTGTGTATGAGGCGATGACGGTAATAATAGTCATTCGAGTAATCACCAGGATGATGGAGAAGGAGAATTCAAATGAGAATAGCGTGTTTGTGGAGTCGCTAGAGAAGCTACTTAAGTTGTGTCAAAGAAGTGGAGTAGTGATAGAAGAGCTTGGTACTTGCGTTTATCATCCACCGCTGAAGATAGACAAGATAACTCAAACGGTGAAGATACTAGAGGGAAATCTCGATGAAGTTGAGGCTCAAGTTGAGTATATGAAGAGGTCTTCCAACGCCTTTCCGGGAGTTTGCAGAAAGCTGCGAGACGCGATCAAACTCATGGAAGTTGGATTGGAAAAAAGAAAGGATTTGAATCAAATTCTGATTTCTCGTCAAAACACTCTCTACAATGCTCTCCAGTTGTTGGATCCAACAGCTTCTCCGATGAATCGATGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

359

Amino Acids

39.49

Weight (kDa)

8.0

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	44 - 186	1.6e-44	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	193 - 293	6.9e-21	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	1042
AccII	CGCG	2 cut(s)	485, 947
AciI	CCGC	1 cut(s)	815
AclWI	GGATC	4 cut(s)	77, 391, 1040, 1053
AcsI	RAATTY	2 cut(s)	706, 996
AcuI	CTGAAG	2 cut(s)	331, 839
AfaI	GTAC	2 cut(s)	312, 796
AfiI	CCNNNNNNNGG	1 cut(s)	1042
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	6 cut(s)	238, 306, 457, 570, 711, 991
AjnI	CCWGG	1 cut(s)	686
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	8 cut(s)	203, 345, 421, 560, 748, 790, 937, 1055
AluI	AGCT	8 cut(s)	203, 345, 421, 560, 748, 790, 937, 1055
Alw26I	GTCTC	3 cut(s)	99, 212, 936
AlwI	GGATC	4 cut(s)	77, 391, 1040, 1053
ApeKI	GCWGC	2 cut(s)	418, 937
ApoI	RAATTY	2 cut(s)	706, 996
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	921
AsuHPI	GGTGA	4 cut(s)	590, 602, 676, 856
AvaII	GGWCC	1 cut(s)	290
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BamHI	GGATCC	1 cut(s)	1045
BbsI	GAAGAC	2 cut(s)	294, 897
BbvI	GCAGC	2 cut(s)	430, 924
BccI	CCATC	2 cut(s)	374, 688
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	3 cut(s)	99, 212, 936
BfaI	CTAG	5 cut(s)	51, 248, 450, 740, 854
BfrI	CTTAAG	1 cut(s)	752
BisI	GCNGC	2 cut(s)	419, 938
BlsI	GCNGC	2 cut(s)	420, 939
Bme1390I	CCNGG	2 cut(s)	688, 921
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	465, 1047
BmrFI	CCNGG	2 cut(s)	688, 921
BmsI	GCATC	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	294, 897
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	3 cut(s)	207, 325, 1019
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	921
Bsa29I	ATCGAT	1 cut(s)	1069
BsaBI	GATNNNNATC	1 cut(s)	990
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 1042, 1072
Bsc4I	CCNNNNNNNGG	1 cut(s)	1042
Bse1I	ACTGG	4 cut(s)	57, 122, 190, 1036
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	1 cut(s)	688
BseCI	ATCGAT	1 cut(s)	1069
BseGI	GGATG	4 cut(s)	46, 532, 696, 808
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	1 cut(s)	1042
BseMII	CTCAG	2 cut(s)	518, 597
BseNI	ACTGG	4 cut(s)	57, 122, 190, 1036
BseXI	GCAGC	2 cut(s)	430, 924
Bsh1236I	CGCG	2 cut(s)	485, 947
BshVI	ATCGAT	1 cut(s)	1069
BsiSI	CCGG	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	1042
BsmAI	GTCTC	3 cut(s)	99, 212, 936
BsmBI	CGTCTC	2 cut(s)	99, 936
Bsp143I	GATC	4 cut(s)	82, 383, 948, 1045
Bsp68I	TCGCGA	1 cut(s)	485
BspACI	CCGC	1 cut(s)	815
BspCNI	CTCAG	2 cut(s)	517, 598
BspDI	ATCGAT	1 cut(s)	1069
BspFNI	CGCG	2 cut(s)	485, 947
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	465, 1047
BspPI	GGATC	4 cut(s)	77, 391, 1040, 1053
BspQI	GCTCTTC	2 cut(s)	249, 780
BspTI	CTTAAG	1 cut(s)	752
BsrI	ACTGG	4 cut(s)	57, 122, 190, 1036
BssMI	GATC	4 cut(s)	82, 383, 948, 1045
Bst2UI	CCWGG	1 cut(s)	688
Bst4CI	ACNGT	3 cut(s)	317, 661, 844
Bst6I	CTCTTC	3 cut(s)	249, 780, 893
BstAFI	CTTAAG	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	504, 606, 1077
BstF5I	GGATG	4 cut(s)	46, 532, 696, 808
BstFNI	CGCG	2 cut(s)	485, 947
BstKTI	GATC	4 cut(s)	85, 386, 951, 1048
BstMAI	GTCTC	3 cut(s)	99, 212, 936
BstMBI	GATC	4 cut(s)	82, 383, 948, 1045
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstNI	CCWGG	1 cut(s)	688
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	686, 919
BstUI	CGCG	2 cut(s)	485, 947
BstV1I	GCAGC	2 cut(s)	430, 924
BstV2I	GAAGAC	2 cut(s)	294, 897
BstX2I	RGATCY	1 cut(s)	1045
BstXI	CCANNNNNNTGG	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	1045
Bsu15I	ATCGAT	1 cut(s)	1069
BsuTUI	ATCGAT	1 cut(s)	1069
BtgZI	GCGATG	2 cut(s)	466, 668
BtsCI	GGATG	4 cut(s)	46, 532, 696, 808
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	64, 499
BtuMI	TCGCGA	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	445
CciI	TCATGA	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	1069
CseI	GACGC	1 cut(s)	953
Csp6I	GTAC	2 cut(s)	311, 795
CviAII	CATG	4 cut(s)	269, 444, 520, 958
CviQI	GTAC	2 cut(s)	311, 795
DdeI	CTNAG	3 cut(s)	504, 606, 1077
DpnI	GATC	4 cut(s)	84, 385, 950, 1047
DpnII	GATC	4 cut(s)	82, 383, 948, 1045
DrdI	GACNNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	3 cut(s)	249, 780, 893
EarI	CTCTTC	3 cut(s)	249, 780, 893
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	331, 839
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	686
Esp3I	CGTCTC	2 cut(s)	99, 936
FaeI	CATG	4 cut(s)	272, 447, 523, 961
FatI	CATG	4 cut(s)	268, 443, 519, 957
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	419, 938
FokI	GGATG	4 cut(s)	33, 539, 703, 795
Fsp4HI	GCNGC	2 cut(s)	419, 938
FspBI	CTAG	5 cut(s)	51, 248, 450, 740, 854
GluI	GCNGC	2 cut(s)	419, 938
GsuI	CTGGAG	3 cut(s)	207, 325, 1019
HapII	CCGG	1 cut(s)	920
HgaI	GACGC	1 cut(s)	953
Hin1II	CATG	4 cut(s)	272, 447, 523, 961
HincII	GTYRAC	2 cut(s)	115, 337
HindII	GTYRAC	2 cut(s)	115, 337
HinfI	GANTC	6 cut(s)	206, 227, 338, 734, 991, 1066
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	4 cut(s)	590, 602, 676, 856
Hpy166II	GTNNAC	3 cut(s)	115, 313, 337
Hpy188I	TCNGA	5 cut(s)	39, 142, 350, 1002, 1062
Hpy188III	TCNNGA	6 cut(s)	426, 457, 484, 520, 605, 866
Hpy8I	GTNNAC	3 cut(s)	115, 313, 337
HpyAV	CCTTC	4 cut(s)	454, 517, 576, 694
HpyCH4III	ACNGT	3 cut(s)	317, 661, 844
HpyCH4V	TGCA	1 cut(s)	930
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	3 cut(s)	504, 606, 1077
Hsp92II	CATG	4 cut(s)	272, 447, 523, 961
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	82, 383, 948, 1045
LguI	GCTCTTC	2 cut(s)	249, 780
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	2 cut(s)	430, 924
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	5 cut(s)	51, 248, 450, 740, 854
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	4 cut(s)	84, 385, 950, 1047
MboI	GATC	4 cut(s)	82, 383, 948, 1045
MboII	GAAGA	7 cut(s)	236, 294, 797, 832, 859, 897, 910
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	1045
MluCI	AATT	3 cut(s)	74, 706, 996
MlyI	GAGTC	3 cut(s)	236, 332, 743
MmeI	TCCRAC	5 cut(s)	110, 933, 946, 1023, 1073
MnlI	CCTC	9 cut(s)	158, 433, 488, 568, 574, 643, 850, 871, 894
MseI	TTAA	5 cut(s)	114, 213, 324, 534, 753
MslI	CAYNNNNRTG	2 cut(s)	167, 689
MspA1I	CMGCKG	1 cut(s)	817
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	2 cut(s)	688, 921
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	688
MvnI	CGCG	2 cut(s)	485, 947
MwoI	GCNNNNNNNGC	1 cut(s)	745
NciI	CCSGG	1 cut(s)	921
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	82, 383, 948, 1045
NlaIII	CATG	4 cut(s)	272, 447, 523, 961
NlaIV	GGNNCC	2 cut(s)	465, 1047
NmuCI	GTSAC	1 cut(s)	59
NruI	TCGCGA	1 cut(s)	485
NspI	RCATGY	1 cut(s)	447
OliI	CACNNNNGTG	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	447
PagI	TCATGA	1 cut(s)	519
PciSI	GCTCTTC	2 cut(s)	249, 780
PfeI	GAWTC	3 cut(s)	206, 991, 1066
PflMI	CCANNNNNTGG	1 cut(s)	1042
PfoI	TCCNGGA	1 cut(s)	919
PkrI	GCNGC	2 cut(s)	420, 939
PleI	GAGTC	3 cut(s)	235, 332, 742
PpsI	GAGTC	3 cut(s)	235, 332, 742
Psp6I	CCWGG	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	686
PspN4I	GGNNCC	2 cut(s)	465, 1047
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	1045
RruI	TCGCGA	1 cut(s)	485
RsaI	GTAC	2 cut(s)	312, 796
RsaNI	GTAC	2 cut(s)	311, 795
RseI	CAYNNNNRTG	2 cut(s)	167, 689
SapI	GCTCTTC	2 cut(s)	249, 780
SaqAI	TTAA	5 cut(s)	114, 213, 324, 534, 753
SatI	GCNGC	2 cut(s)	419, 938
Sau3AI	GATC	4 cut(s)	82, 383, 948, 1045
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	3 cut(s)	236, 332, 743
ScrFI	CCNGG	2 cut(s)	688, 921
SfaNI	GCATC	1 cut(s)	593
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	167, 689
SmlI	CTYRAG	2 cut(s)	752, 882
SmoI	CTYRAG	2 cut(s)	752, 882
SphI	GCATGC	1 cut(s)	447
Sse9I	AATT	3 cut(s)	74, 706, 996
SsiI	CCGC	1 cut(s)	815
SspMI	CTAG	5 cut(s)	51, 248, 450, 740, 854
StyD4I	CCNGG	2 cut(s)	686, 919
TaaI	ACNGT	3 cut(s)	317, 661, 844
TaqI	TCGA	4 cut(s)	81, 676, 867, 1069
TasI	AATT	3 cut(s)	74, 706, 996
TfiI	GAWTC	3 cut(s)	206, 991, 1066
Tru1I	TTAA	5 cut(s)	114, 213, 324, 534, 753
Tru9I	TTAA	5 cut(s)	114, 213, 324, 534, 753
TscAI	CASTG	2 cut(s)	64, 499
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	418, 937
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	6 cut(s)	405, 536, 557, 885, 911, 1079
TspRI	CASTG	2 cut(s)	64, 499
Van91I	CCANNNNNTGG	1 cut(s)	1042
Vha464I	CTTAAG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	2 cut(s)	706, 996
XceI	RCATGY	1 cut(s)	447
XspI	CTAG	5 cut(s)	51, 248, 450, 740, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.