Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

91553 .. 95323

Gene Structure 3771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atggggcgagaaaatccggcggaaaaagccctaattcttctgaggaccagactctgtgacccgaatttcattttccggccgctctgtgaatcttccgactcaaattacagcaagctgaagttcttagtgtcgagttcgattaccgaggcgtgcaataactctatcctgcttctgggtcctcgtggttctggaaaaattgctgtatgcccaatttttccattgggccgaatcgggtcagtgacccggtgtattcaattaacttcgacggcagtgccagttccttccttcttcttcataaaaccccaaaccctgagagctcttggcaatttcagcagccgcaccaattcctcctccgcagaaatgggtagagccgagaaagagcaactgaaccgaactctgaaccagcacctcaacactgtccatgaaatcttagaggtgttggatcaaaacccacgttctacacttgagaaggtgagctgggaagaggtcgtccagatgggtaaccaagtctccaagcaagccaccattgttggaatgatttggagtggagaaagagtagaagctagagtgcttgaagaaaacatgacggccgactgtaatatgctacaaggttttcttcttctttcaaatgggagtatgggtggtgcagggcctactctttcttcttgtgtccacacatctgtaaagcaagttgttgactccagttttaagttgatgaaggaatctatctcgttgtatggagcagtgaataaagaccggaaactgtcgattccacagttggctggtgcagtatgggaagcctgttctgctcttaagaagacccctgccacaaatgtcacagcaattgggcgagcaatgacgcaggttgcagtcaccatgaaagatgtacttcgtgagatgaaggagcttaagccggctagtgacccaacagaagatgagactgaagcagaaattgagccccatgatgatgaaacttcgagtgatagtgatctgggaaatgacttgtcacctgaagagatgaaagttgctgagctagcaattgcagccgtgtctgagactcttgtagtgataaaggaactaattcgtaccatcacaagtttgcttaaacgggaaagtccaaatgacagtagtcttgtggattctctggagaaactgttgaagatgtgtaaaggaattggagaacagatagatgagcttggagcttgtctctaccccccgcaagaggttcccactatcaaggcagtattggagaaaatgtcgagccttactgatgacatgaaagctgaattacagagtcttcaagaaaatttggaagctttttgtcaggcatgcgattgtttgaagggttcattgagacagcttgaatctgcactagaccatccaacagttattggtttagaaaccagagtgcagaagattgatttgaacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

477

Amino Acids

52.15

Weight (kDa)

5.1

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	853
AccBSI	CCGCTC	1 cut(s)	82
AciI	CCGC	5 cut(s)	20, 80, 337, 354, 1217
AclWI	GGATC	1 cut(s)	450
AcoI	YGGCCR	2 cut(s)	77, 588
AcsI	RAATTY	2 cut(s)	64, 1306
AcuI	CTGAAG	3 cut(s)	137, 963, 1032
AfaI	GTAC	2 cut(s)	888, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	172, 1222
AflII	CTTAAG	2 cut(s)	812, 908
AgsI	TTSAA	8 cut(s)	254, 575, 627, 1159, 1301, 1342, 1364, 1426
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	5 cut(s)	514, 932, 1049, 1211, 1348
AlwI	GGATC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	54
AoxI	GGCC	4 cut(s)	77, 223, 588, 650
ApeKI	GCWGC	2 cut(s)	333, 1043
ApoI	RAATTY	2 cut(s)	64, 1306
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspS9I	GGNCC	4 cut(s)	45, 176, 223, 650
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	484, 865, 999
AsuNHI	GCTAGC	1 cut(s)	1033
AvaII	GGWCC	2 cut(s)	45, 176
BanII	GRGCYC	2 cut(s)	319, 960
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	824, 1289
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	345, 1055
BccI	CCATC	3 cut(s)	490, 1097, 1386
BceAI	ACGGC	3 cut(s)	282, 603, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	5 cut(s)	514, 932, 1049, 1211, 1348
BfaI	CTAG	4 cut(s)	564, 918, 1034, 1373
BfrI	CTTAAG	2 cut(s)	812, 908
BfuAI	ACCTGC	1 cut(s)	853
BisI	GCNGC	4 cut(s)	80, 334, 337, 1044
BlpI	GCTNAGC	1 cut(s)	1029
BlsI	GCNGC	4 cut(s)	81, 335, 338, 1045
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	2 cut(s)	45, 176
BmgT120I	GGNCC	4 cut(s)	45, 176, 223, 650
BmiI	GGNNCC	2 cut(s)	177, 1227
BmrFI	CCNGG	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	1037
BoxI	GACNNNNGTC	1 cut(s)	1128
BpiI	GAAGAC	2 cut(s)	824, 1289
BplI	GAGNNNNNCTC	2 cut(s)	1191, 1223
BpmI	CTGGAG	2 cut(s)	685, 1166
Bpu1102I	GCTNAGC	1 cut(s)	1029
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	987
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	756
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 1222
Bse118I	RCCGGY	1 cut(s)	913
Bse1I	ACTGG	2 cut(s)	275, 702
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	1378
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	2 cut(s)	172, 1222
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	32, 302, 1020, 1044
BseNI	ACTGG	2 cut(s)	275, 702
BseRI	GAGGAG	1 cut(s)	340
BseX3I	CGGCCG	2 cut(s)	77, 588
BseXI	GCAGC	2 cut(s)	345, 1055
BseYI	CCCAGC	1 cut(s)	477
BsgI	GTGCAG	4 cut(s)	666, 807, 1353, 1430
Bsh1285I	CGRYCG	2 cut(s)	80, 591
BshFI	GGCC	4 cut(s)	79, 225, 590, 652
BsiEI	CGRYCG	2 cut(s)	80, 591
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	5 cut(s)	17, 76, 244, 757, 914
BslI	CCNNNNNNNGG	2 cut(s)	172, 1222
BsmAI	GTCTC	5 cut(s)	514, 932, 1049, 1211, 1348
BsnI	GGCC	4 cut(s)	79, 225, 590, 652
Bsp1286I	GDGCHC	2 cut(s)	319, 960
Bsp143I	GATC	2 cut(s)	442, 988
Bsp1720I	GCTNAGC	1 cut(s)	1029
BspACI	CCGC	5 cut(s)	20, 80, 337, 354, 1217
BspANI	GGCC	4 cut(s)	79, 225, 590, 652
BspCNI	CTCAG	4 cut(s)	33, 303, 1021, 1045
BspLI	GGNNCC	2 cut(s)	177, 1227
BspMI	ACCTGC	1 cut(s)	853
BspOI	GCTAGC	1 cut(s)	1037
BspPI	GGATC	1 cut(s)	450
BspTI	CTTAAG	2 cut(s)	812, 908
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	861
BsrFI	RCCGGY	1 cut(s)	913
BsrI	ACTGG	2 cut(s)	275, 702
BssAI	RCCGGY	1 cut(s)	913
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	442, 988
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	7 cut(s)	418, 596, 765, 777, 1127, 1155, 1387
Bst6I	CTCTTC	2 cut(s)	477, 1008
BstAFI	CTTAAG	2 cut(s)	812, 908
BstC8I	GCNNGC	7 cut(s)	113, 151, 519, 852, 915, 1035, 1330
BstDEI	CTNAG	6 cut(s)	41, 124, 311, 430, 1029, 1053
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	1378
BstKTI	GATC	2 cut(s)	445, 991
BstMAI	GTCTC	5 cut(s)	514, 932, 1049, 1211, 1348
BstMBI	GATC	2 cut(s)	442, 988
BstMCI	CGRYCG	2 cut(s)	80, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 330, 806, 1034, 1043
BstNSI	RCATGY	1 cut(s)	1332
BstPAI	GACNNNNGTC	1 cut(s)	1128
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	345, 1055
BstV2I	GAAGAC	2 cut(s)	824, 1289
BstZI	CGGCCG	2 cut(s)	77, 588
BsuRI	GGCC	4 cut(s)	79, 225, 590, 652
BtsCI	GGATG	1 cut(s)	1378
BtsI	GCAGTG	2 cut(s)	276, 750
BtsIMutI	CAGTG	4 cut(s)	243, 276, 414, 750
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	7 cut(s)	113, 151, 519, 852, 915, 1035, 1330
CaiI	CAGNNNCTG	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	913
Cfr13I	GGNCC	4 cut(s)	45, 176, 223, 650
CseI	GACGC	1 cut(s)	868
Csp6I	GTAC	2 cut(s)	887, 1086
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	6 cut(s)	422, 583, 877, 962, 1276, 1329
CviQI	GTAC	2 cut(s)	887, 1086
DdeI	CTNAG	6 cut(s)	41, 124, 311, 430, 1029, 1053
DpnI	GATC	2 cut(s)	444, 990
DpnII	GATC	2 cut(s)	442, 988
EaeI	YGGCCR	2 cut(s)	77, 588
EagI	CGGCCG	2 cut(s)	77, 588
Eam1104I	CTCTTC	2 cut(s)	477, 1008
EarI	CTCTTC	2 cut(s)	477, 1008
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	317
EclXI	CGGCCG	2 cut(s)	77, 588
Eco24I	GRGCYC	2 cut(s)	319, 960
Eco47I	GGWCC	2 cut(s)	45, 176
Eco52I	CGGCCG	2 cut(s)	77, 588
Eco53kI	GAGCTC	1 cut(s)	317
Eco57I	CTGAAG	3 cut(s)	137, 963, 1032
Eco91I	GGTNACC	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	176, 650
EcoO65I	GGTNACC	1 cut(s)	500
EcoT38I	GRGCYC	2 cut(s)	319, 960
FaeI	CATG	6 cut(s)	425, 586, 880, 965, 1279, 1332
FalI	AAGNNNNNCTT	4 cut(s)	600, 632, 873, 905
FatI	CATG	6 cut(s)	421, 582, 876, 961, 1275, 1328
FauI	CCCGC	1 cut(s)	1224
Fnu4HI	GCNGC	4 cut(s)	80, 334, 337, 1044
FokI	GGATG	1 cut(s)	1365
FriOI	GRGCYC	2 cut(s)	319, 960
Fsp4HI	GCNGC	4 cut(s)	80, 334, 337, 1044
FspBI	CTAG	4 cut(s)	564, 918, 1034, 1373
GluI	GCNGC	4 cut(s)	80, 334, 337, 1044
GsaI	CCCAGC	1 cut(s)	481
GsuI	CTGGAG	2 cut(s)	685, 1166
HaeIII	GGCC	4 cut(s)	79, 225, 590, 652
HapII	CCGG	5 cut(s)	17, 76, 244, 757, 914
HgaI	GACGC	1 cut(s)	868
Hin1II	CATG	6 cut(s)	425, 586, 880, 965, 1279, 1332
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	1314
HpaII	CCGG	5 cut(s)	17, 76, 244, 757, 914
HphI	GGTGA	3 cut(s)	484, 865, 999
Hpy166II	GTNNAC	2 cut(s)	673, 697
Hpy188I	TCNGA	4 cut(s)	42, 97, 399, 1054
Hpy188III	TCNNGA	5 cut(s)	189, 493, 893, 1145, 1301
Hpy8I	GTNNAC	2 cut(s)	673, 697
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	6 cut(s)	291, 295, 463, 712, 895, 1336
HpyCH4III	ACNGT	7 cut(s)	418, 596, 765, 777, 1127, 1155, 1387
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	7 cut(s)	153, 647, 788, 869, 1043, 1370, 1411
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 330, 806, 1034, 1043
HpyF3I	CTNAG	6 cut(s)	41, 124, 311, 430, 1029, 1053
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	6 cut(s)	425, 586, 880, 965, 1279, 1332
KroI	GCCGGC	1 cut(s)	913
KroNI	GCCGGC	1 cut(s)	915
Kzo9I	GATC	2 cut(s)	442, 988
LmnI	GCTCC	3 cut(s)	740, 904, 1199
Lsp1109I	GCAGC	2 cut(s)	345, 1055
MaeI	CTAG	4 cut(s)	564, 918, 1034, 1373
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	7 cut(s)	56, 238, 500, 835, 871, 920, 1005
MalI	GATC	2 cut(s)	444, 990
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	442, 988
MfeI	CAATTG	2 cut(s)	843, 1038
MhlI	GDGCHC	2 cut(s)	319, 960
MlyI	GAGTC	5 cut(s)	45, 92, 692, 1051, 1303
MmeI	TCCRAC	4 cut(s)	120, 420, 511, 1406
MnlI	CCTC	9 cut(s)	36, 139, 189, 358, 361, 419, 427, 478, 1216
MroNI	GCCGGC	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	5 cut(s)	257, 708, 813, 909, 1104
MslI	CAYNNNNRTG	1 cut(s)	966
MspCI	CTTAAG	2 cut(s)	812, 908
MspI	CCGG	5 cut(s)	17, 76, 244, 757, 914
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	2 cut(s)	843, 1038
MwoI	GCNNNNNNNGC	5 cut(s)	26, 330, 806, 1034, 1043
NaeI	GCCGGC	1 cut(s)	915
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	442, 988
NgoMIV	GCCGGC	1 cut(s)	913
NheI	GCTAGC	1 cut(s)	1033
NlaIII	CATG	6 cut(s)	425, 586, 880, 965, 1279, 1332
NlaIV	GGNNCC	2 cut(s)	177, 1227
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	6 cut(s)	56, 238, 835, 871, 920, 1005
NspI	RCATGY	1 cut(s)	1332
PaeI	GCATGC	1 cut(s)	1332
PdiI	GCCGGC	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	6 cut(s)	89, 228, 722, 769, 1139, 1364
PkrI	GCNGC	4 cut(s)	81, 335, 338, 1045
PleI	GAGTC	5 cut(s)	45, 92, 692, 1051, 1302
PpsI	GAGTC	5 cut(s)	45, 92, 692, 1051, 1302
PpuMI	RGGWCCY	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	1128
Psp124BI	GAGCTC	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	176
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	177, 1227
PspPI	GGNCC	4 cut(s)	45, 176, 223, 650
PspPPI	RGGWCCY	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	54
RsaI	GTAC	2 cut(s)	888, 1087
RsaNI	GTAC	2 cut(s)	887, 1086
RseI	CAYNNNNRTG	1 cut(s)	966
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	5 cut(s)	257, 708, 813, 909, 1104
SatI	GCNGC	4 cut(s)	80, 334, 337, 1044
Sau3AI	GATC	2 cut(s)	442, 988
Sau96I	GGNCC	4 cut(s)	45, 176, 223, 650
SchI	GAGTC	5 cut(s)	45, 92, 692, 1051, 1303
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	319, 960
SinI	GGWCC	2 cut(s)	45, 176
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	3 cut(s)	464, 812, 908
SmoI	CTYRAG	3 cut(s)	464, 812, 908
SphI	GCATGC	1 cut(s)	1332
SsiI	CCGC	5 cut(s)	20, 80, 337, 354, 1217
SspMI	CTAG	4 cut(s)	564, 918, 1034, 1373
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	7 cut(s)	418, 596, 765, 777, 1127, 1155, 1387
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	6 cut(s)	131, 137, 263, 767, 977, 1259
TatI	WGTACW	1 cut(s)	886
TauI	GCSGC	2 cut(s)	82, 339
TfiI	GAWTC	6 cut(s)	89, 228, 722, 769, 1139, 1364
Tru1I	TTAA	5 cut(s)	257, 708, 813, 909, 1104
Tru9I	TTAA	5 cut(s)	257, 708, 813, 909, 1104
TscAI	CASTG	4 cut(s)	243, 276, 421, 750
TseFI	GTSAC	6 cut(s)	56, 238, 835, 871, 920, 1005
TseI	GCWGC	2 cut(s)	333, 1043
Tsp45I	GTSAC	6 cut(s)	56, 238, 835, 871, 920, 1005
TspRI	CASTG	4 cut(s)	243, 276, 421, 750
Vha464I	CTTAAG	2 cut(s)	812, 908
VpaK11BI	GGWCC	2 cut(s)	45, 176
XapI	RAATTY	2 cut(s)	64, 1306
XceI	RCATGY	1 cut(s)	1332
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	4 cut(s)	564, 918, 1034, 1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.