Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Reverse (-)

30711393 .. 30714596

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G320200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGACAAGAGTTTGTTAATAGAAGAGGGAGAGGACAGAGGACGTGTTGACAGATGCGGTTTGTTTGTTGCAGAAGTGAAAAGGTTGGGATACATAGCAGGGCCTATGGTGGCTGTGAATTTGTCTCAGTACTTCTTGCAAATCATTTCGATCATGATGGTGGGCCATCTGGGTCAGCTCTCTCTTTCCAGCACTGCGATTGCCATCTCTTTTTGTGCTGTCTCCGGCTTCAGTCTTCTTTTTGGAATGGCTTGTGCACTGGAAACTCTGTCAGGGCAAGCTTATGGAGCTCAGCAATATAAACAACTAGGACTTCAAATCAACACTGCTATTTTTTCTCTACTCCTAGTTTGTCTCCCTCTGTCTCTCGTGTGGATCTACATGGGAGAAATACTAATTTTCATGGGCCAAGACCCTCTAATTTCACTTGAAGCTGGTAAGTTTGCAAGGATGCTCTTACCTGCACTCTTTGCTTATGCAACTCTTCAGCCACTTTGTAAATATCTTCAGACACAAAGCTTGATCATTCCCTTGCTCGTATGCGGTTGTGCTTCTCTGTGCTTCCACATACCTTTTTGTTGGGCTATGGTATTTAAGTCTGGACTAGGACACCTTGGAGCAGCATTAGCCATTGGTATGTCGTATTGGTTAAATGTGATTCTACTCATACTATATGTGACGTACTCCACTGCCTGTGCACGTACCCGGGTTCCAATTTCTTTGGAGCTGTTTCAAGGAATTAGAGAATTCTTGCGTTTTGCAATTCCTTCTGCCGTAATGATTTGCCTTGAATGGTGGTCATTTGAGCTCCTTATCTTGCTGGCTGGTTTTCTACCAAATCCGGAGCTTGAAACTTCAGTTTTATCTATATGCTTGTCAACCATCTCATCACTGTATACAATACCAGAAGGCCTTGGTGCAGCAGGAAGCACTAGGGTTTCAAATGAATTAGGTGCTGGAAATCCCCAAGCAGCTCGATTAGCTGTTGCTGCTGTTATGTTTCTTACAGTCTCAGGGGTAGTTATTATAAGCTCAACCGTTTTCGCCAGCCGATCTGTTTTTGGTTACATTTTCAGCAAGGACAAGGAAGTTGTGGATTATGTCACTTCCATGGCTCCTCTGATTTGTCTATCAGTTATATCCGACAACTTACACGGGGTTCTTTCTGGTATTGCTAGGGGATGTGGATGGCAGGACTTGGGAGTGTATGTCAACCTCGGAGCATATTATCTAGTTGGGATTCCGGTTGCTGCCACATTGTGTTTCTGGTTAGACTTGAGAGGAAGGGGGCTTTGGATTGGGATACAAGTCGGTTCTTTTCTGCAAGCATTTCTTTACTCTGTGATAACAAGTTGTACAAATTGGGAAGAAAAGGCAAGAAAGACAAGGGAGAGGATATTTGTGGAAAAATCTCCAGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

475

Amino Acids

51.65

Weight (kDa)

7.4

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
Acc36I	ACCTGC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	896
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	2 cut(s)	57, 543
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	2 cut(s)	118, 746
AcuI	CTGAAG	4 cut(s)	214, 470, 491, 840
AdeI	CACNNNGTG	1 cut(s)	1260
AfaI	GTAC	4 cut(s)	131, 683, 703, 1357
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	6 cut(s)	317, 431, 734, 791, 851, 942
AjiI	CACGTC	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	1276, 1308
Alw21I	GWGCWC	4 cut(s)	259, 292, 700, 810
Alw26I	GTCTC	5 cut(s)	129, 226, 359, 369, 1015
Alw44I	GTGCAC	2 cut(s)	255, 696
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	705
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	4 cut(s)	101, 163, 406, 910
ApaLI	GTGCAC	2 cut(s)	255, 696
ApeKI	GCWGC	5 cut(s)	620, 920, 971, 989, 1250
ApoI	RAATTY	2 cut(s)	118, 746
AspS9I	GGNCC	3 cut(s)	101, 163, 406
AsuC2I	CCSGG	2 cut(s)	706, 707
AvaI	CYCGRG	1 cut(s)	705
BaeGI	GKGCMC	2 cut(s)	259, 700
BanII	GRGCYC	2 cut(s)	292, 810
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	4 cut(s)	259, 292, 700, 810
BbvI	GCAGC	5 cut(s)	632, 932, 976, 983, 1237
BccI	CCATC	5 cut(s)	151, 174, 212, 890, 1182
BceAI	ACGGC	1 cut(s)	758
BciVI	GTATCC	2 cut(s)	83, 1296
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	2 cut(s)	706, 707
BcoDI	GTCTC	5 cut(s)	129, 226, 359, 369, 1015
BfaI	CTAG	6 cut(s)	308, 347, 605, 933, 1176, 1232
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	2 cut(s)	83, 1296
BisI	GCNGC	5 cut(s)	621, 921, 972, 990, 1251
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	5 cut(s)	622, 922, 973, 991, 1252
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	706, 707
BmeT110I	CYCGRG	1 cut(s)	705
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	101, 163, 406
BmiI	GGNNCC	2 cut(s)	711, 1116
BmrFI	CCNGG	2 cut(s)	706, 707
BmsI	GCATC	2 cut(s)	44, 441
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	1398
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	1297
BpuMI	CCSGG	2 cut(s)	706, 707
BsaAI	YACGTR	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	203
BsaJI	CCNNGG	5 cut(s)	613, 705, 913, 1110, 1216
BsaWI	WCCGGW	2 cut(s)	841, 1243
BsaXI	ACNNNNNCTCC	2 cut(s)	1194, 1224
Bse1I	ACTGG	2 cut(s)	264, 1415
Bse8I	GATNNNNATC	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	841
BseDI	CCNNGG	5 cut(s)	613, 705, 913, 1110, 1216
BseGI	GGATG	3 cut(s)	456, 1187, 1193
BseJI	GATNNNNATC	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	140, 305, 1026
BseNI	ACTGG	2 cut(s)	264, 1415
BseRI	GAGGAG	1 cut(s)	1107
BseSI	GKGCMC	2 cut(s)	259, 700
BseXI	GCAGC	5 cut(s)	632, 932, 976, 983, 1237
BsgI	GTGCAG	2 cut(s)	447, 939
BshFI	GGCC	4 cut(s)	103, 165, 408, 912
BsiHKAI	GWGCWC	4 cut(s)	259, 292, 700, 810
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	4 cut(s)	225, 706, 842, 1244
BsmAI	GTCTC	5 cut(s)	129, 226, 359, 369, 1015
BsnI	GGCC	4 cut(s)	103, 165, 408, 912
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	4 cut(s)	259, 292, 700, 810
Bsp13I	TCCGGA	1 cut(s)	841
Bsp1407I	TGTACA	1 cut(s)	1355
Bsp143I	GATC	4 cut(s)	150, 375, 522, 1052
Bsp1720I	GCTNAGC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	2 cut(s)	57, 543
BspANI	GGCC	4 cut(s)	103, 165, 408, 912
BspCNI	CTCAG	3 cut(s)	139, 304, 1025
BspEI	TCCGGA	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	711, 1116
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	1355
BsrI	ACTGG	2 cut(s)	264, 1415
BssECI	CCNNGG	5 cut(s)	613, 705, 913, 1110, 1216
BssMI	GATC	4 cut(s)	150, 375, 522, 1052
BssNAI	GTATAC	1 cut(s)	897
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	3 cut(s)	613, 913, 1110
Bst1107I	GTATAC	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	894, 1009, 1039
Bst6I	CTCTTC	2 cut(s)	18, 489
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	1355
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	279, 822, 1048, 1326
BstDEI	CTNAG	3 cut(s)	126, 291, 1012
BstDSI	CCRYGG	1 cut(s)	1110
BstF5I	GGATG	3 cut(s)	456, 1187, 1193
BstKTI	GATC	4 cut(s)	153, 378, 525, 1055
BstMAI	GTCTC	5 cut(s)	129, 226, 359, 369, 1015
BstMBI	GATC	4 cut(s)	150, 375, 522, 1052
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 470, 626, 980, 989
BstSCI	CCNGG	2 cut(s)	704, 705
BstSLI	GKGCMC	2 cut(s)	259, 700
BstV1I	GCAGC	5 cut(s)	632, 932, 976, 983, 1237
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	897
BsuI	GTATCC	2 cut(s)	83, 1296
BsuRI	GGCC	4 cut(s)	103, 165, 408, 912
BtgI	CCRYGG	1 cut(s)	1110
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	456, 1187, 1193
BtsI	GCAGTG	3 cut(s)	192, 324, 687
BtsIMutI	CAGTG	5 cut(s)	192, 257, 324, 687, 890
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	4 cut(s)	279, 822, 1048, 1326
CciI	TCATGA	1 cut(s)	153
Cfr13I	GGNCC	3 cut(s)	101, 163, 406
Cfr9I	CCCGGG	1 cut(s)	705
Csp6I	GTAC	4 cut(s)	130, 682, 702, 1356
CviAII	CATG	4 cut(s)	154, 382, 403, 1111
CviQI	GTAC	4 cut(s)	130, 682, 702, 1356
DdeI	CTNAG	3 cut(s)	126, 291, 1012
DpnI	GATC	4 cut(s)	152, 377, 524, 1054
DpnII	GATC	4 cut(s)	150, 375, 522, 1052
DraIII	CACNNNGTG	1 cut(s)	1260
Eam1104I	CTCTTC	2 cut(s)	18, 489
EarI	CTCTTC	2 cut(s)	18, 489
Ecl136II	GAGCTC	2 cut(s)	290, 808
Eco130I	CCWWGG	3 cut(s)	613, 913, 1110
Eco147I	AGGCCT	1 cut(s)	912
Eco24I	GRGCYC	2 cut(s)	292, 810
Eco53kI	GAGCTC	2 cut(s)	290, 808
Eco57I	CTGAAG	4 cut(s)	214, 470, 491, 840
Eco88I	CYCGRG	1 cut(s)	705
EcoICRI	GAGCTC	2 cut(s)	290, 808
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	746
EcoT14I	CCWWGG	3 cut(s)	613, 913, 1110
EcoT38I	GRGCYC	2 cut(s)	292, 810
ErhI	CCWWGG	3 cut(s)	613, 913, 1110
FaeI	CATG	4 cut(s)	157, 385, 406, 1114
FalI	AAGNNNNNCTT	2 cut(s)	1317, 1349
FatI	CATG	4 cut(s)	153, 381, 402, 1110
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	896
Fnu4HI	GCNGC	5 cut(s)	621, 921, 972, 990, 1251
FokI	GGATG	3 cut(s)	463, 1194, 1200
FriOI	GRGCYC	2 cut(s)	292, 810
Fsp4HI	GCNGC	5 cut(s)	621, 921, 972, 990, 1251
FspBI	CTAG	6 cut(s)	308, 347, 605, 933, 1176, 1232
GluI	GCNGC	5 cut(s)	621, 921, 972, 990, 1251
GsuI	CTGGAG	1 cut(s)	1398
HaeIII	GGCC	4 cut(s)	103, 165, 408, 912
HapII	CCGG	4 cut(s)	225, 706, 842, 1244
Hin1II	CATG	4 cut(s)	157, 385, 406, 1114
HincII	GTYRAC	3 cut(s)	49, 879, 1213
HindII	GTYRAC	3 cut(s)	49, 879, 1213
HindIII	AAGCTT	2 cut(s)	279, 517
HinfI	GANTC	2 cut(s)	658, 1240
HpaII	CCGG	4 cut(s)	225, 706, 842, 1244
Hpy166II	GTNNAC	6 cut(s)	49, 257, 698, 879, 897, 1213
Hpy188I	TCNGA	4 cut(s)	510, 1122, 1144, 1220
Hpy188III	TCNNGA	3 cut(s)	154, 600, 842
Hpy8I	GTNNAC	6 cut(s)	49, 257, 698, 879, 897, 1213
HpyAV	CCTTC	3 cut(s)	777, 902, 1278
HpyCH4III	ACNGT	3 cut(s)	894, 1009, 1039
HpyCH4IV	ACGT	3 cut(s)	43, 680, 700
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 470, 626, 980, 989
HpyF3I	CTNAG	3 cut(s)	126, 291, 1012
HpySE526I	ACGT	3 cut(s)	43, 680, 700
Hsp92II	CATG	4 cut(s)	157, 385, 406, 1114
Kpn2I	TCCGGA	1 cut(s)	841
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	150, 375, 522, 1052
LmnI	GCTCC	7 cut(s)	287, 617, 724, 813, 844, 1120, 1220
Lsp1109I	GCAGC	5 cut(s)	632, 932, 976, 983, 1237
LweI	GCATC	2 cut(s)	44, 441
MaeI	CTAG	6 cut(s)	308, 347, 605, 933, 1176, 1232
MaeII	ACGT	3 cut(s)	43, 680, 700
MaeIII	GTNAC	3 cut(s)	676, 1064, 1102
MalI	GATC	4 cut(s)	152, 377, 524, 1054
MboI	GATC	4 cut(s)	150, 375, 522, 1052
MboII	GAAGA	5 cut(s)	35, 227, 476, 497, 1379
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	4 cut(s)	259, 292, 700, 810
MluCI	AATT	9 cut(s)	118, 396, 420, 714, 738, 746, 762, 947, 1360
MmeI	TCCRAC	1 cut(s)	1167
MnlI	CCTC	9 cut(s)	19, 25, 32, 369, 426, 1128, 1226, 1274, 1386
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	3 cut(s)	17, 594, 650
MslI	CAYNNNNRTG	3 cut(s)	158, 635, 1109
MspI	CCGG	4 cut(s)	225, 706, 842, 1244
MspR9I	CCNGG	2 cut(s)	706, 707
MwoI	GCNNNNNNNGC	5 cut(s)	287, 470, 626, 980, 989
NciI	CCSGG	2 cut(s)	706, 707
NcoI	CCATGG	1 cut(s)	1110
NdeII	GATC	4 cut(s)	150, 375, 522, 1052
NlaIII	CATG	4 cut(s)	157, 385, 406, 1114
NlaIV	GGNNCC	2 cut(s)	711, 1116
NmuCI	GTSAC	2 cut(s)	676, 1102
PagI	TCATGA	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	912
PfeI	GAWTC	2 cut(s)	658, 1240
PkrI	GCNGC	5 cut(s)	622, 922, 973, 991, 1252
Ppu21I	YACGTR	1 cut(s)	701
PsiI	TTATAA	1 cut(s)	1028
Psp124BI	GAGCTC	2 cut(s)	292, 810
PspN4I	GGNNCC	2 cut(s)	711, 1116
PspPI	GGNCC	3 cut(s)	101, 163, 406
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	4 cut(s)	131, 683, 703, 1357
RsaNI	GTAC	4 cut(s)	130, 682, 702, 1356
RseI	CAYNNNNRTG	3 cut(s)	158, 635, 1109
SacI	GAGCTC	2 cut(s)	292, 810
SaqAI	TTAA	3 cut(s)	17, 594, 650
SatI	GCNGC	5 cut(s)	621, 921, 972, 990, 1251
Sau3AI	GATC	4 cut(s)	150, 375, 522, 1052
Sau96I	GGNCC	3 cut(s)	101, 163, 406
ScaI	AGTACT	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	706, 707
SduI	GDGCHC	4 cut(s)	259, 292, 700, 810
SfaNI	GCATC	2 cut(s)	44, 441
SmaI	CCCGGG	1 cut(s)	707
SmiMI	CAYNNNNRTG	3 cut(s)	158, 635, 1109
SmlI	CTYRAG	1 cut(s)	1276
SmoI	CTYRAG	1 cut(s)	1276
Sse9I	AATT	9 cut(s)	118, 396, 420, 714, 738, 746, 762, 947, 1360
SseBI	AGGCCT	1 cut(s)	912
SsiI	CCGC	2 cut(s)	57, 543
SspMI	CTAG	6 cut(s)	308, 347, 605, 933, 1176, 1232
SstI	GAGCTC	2 cut(s)	292, 810
StuI	AGGCCT	1 cut(s)	912
StyD4I	CCNGG	2 cut(s)	704, 705
StyI	CCWWGG	3 cut(s)	613, 913, 1110
TaaI	ACNGT	3 cut(s)	894, 1009, 1039
TaiI	ACGT	3 cut(s)	46, 683, 703
TaqI	TCGA	2 cut(s)	149, 976
TasI	AATT	9 cut(s)	118, 396, 420, 714, 738, 746, 762, 947, 1360
TatI	WGTACW	2 cut(s)	129, 1355
TfiI	GAWTC	2 cut(s)	658, 1240
Tru1I	TTAA	3 cut(s)	17, 594, 650
Tru9I	TTAA	3 cut(s)	17, 594, 650
TscAI	CASTG	5 cut(s)	199, 264, 331, 694, 897
TseFI	GTSAC	2 cut(s)	676, 1102
TseI	GCWGC	5 cut(s)	620, 920, 971, 989, 1250
Tsp45I	GTSAC	2 cut(s)	676, 1102
TspDTI	ATGAA	2 cut(s)	391, 960
TspMI	CCCGGG	1 cut(s)	705
TspRI	CASTG	5 cut(s)	199, 264, 331, 694, 897
VneI	GTGCAC	2 cut(s)	255, 696
XapI	RAATTY	2 cut(s)	118, 746
XmaI	CCCGGG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	896
XspI	CTAG	6 cut(s)	308, 347, 605, 933, 1176, 1232
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.