Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474767.1

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1641

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggcctgtgcactcgaaactctctccgggcaagcatatggagctcagcagtatcaacagctaggacttcatataagcactgctatcttatctctaatgctagtttgtctccctctgtctcttgtgtggttctacatggagaagatactaatgttgttgggccaagaccctctaatttcgcatgaagcgggtaagtttgcaaggatgctcatacctgcactctatgcttatgcagctcttcagccactttgtaaatatctccagacacaaagcttaatcgttccattgcttttaagctcttgcgcctctgtgtgcttccatgttcttgtctgctgggttttggtgttcaagtctggactagggaaccttggagcagctttagccattgtatttcaaggcattggagagttcttacgttttgctattccatctgcggttatgatttgccttgaatggtggtcatttgagctccttaccttgatggctggttttctaccaaatccggagcttgaaacatcagttttatctgtttgtttgtcaactatctcatcactgtatacaattccagaagcacttggtgccgcagtaagtactagagtttcaaatgaacttggagctgggaatccacaagcagctcgattagctgttgttgcttctatgttcctaaccgtctcagagtcagtcattataagctcaaccgtctttgccagtcgatctgtttttggctacgtcttcagcaatgagaaggaagttgtggattatgtcacttccattgctcctctggtttgtctatcagttacaacagacagcttacatgcggttctttctggtattgctaggggatctggttggcaggacttggcaatgtatgtcaacctcggagcttactatcttgttgggattccggttgctgccacattgggtttctggttcgacttcagaggaagaggcctttggattggaatactagtcggttcttttctgcaagcagccctttattctatcataacaagttgtacgaactgggaagaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

345

Amino Acids

37.26

Weight (kDa)

5.2

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	557
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	4 cut(s)	188, 434, 582, 818
AclWI	GGATC	1 cut(s)	850
AcuI	CTGAAG	3 cut(s)	224, 718, 922
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	592, 1018
AgsI	TTSAA	5 cut(s)	349, 395, 452, 512, 603
AhlI	ACTAGT	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	937, 969
Alw21I	GWGCWC	3 cut(s)	13, 46, 471
Alw26I	GTCTC	3 cut(s)	113, 123, 676
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	850
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	3 cut(s)	3, 160, 949
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	5 cut(s)	233, 374, 632, 911, 989
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	137, 170
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	2 cut(s)	46, 471
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	3 cut(s)	13, 46, 471
BbvI	GCAGC	5 cut(s)	245, 386, 644, 898, 1001
BccI	CCATC	2 cut(s)	436, 475
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	113, 123, 676
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	6 cut(s)	62, 101, 359, 594, 837, 968
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	6 cut(s)	234, 375, 582, 633, 912, 990
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	6 cut(s)	235, 376, 583, 634, 913, 991
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	365, 580
BmrFI	CCNGG	1 cut(s)	28
BmrI	ACTGGG	1 cut(s)	1033
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	1033
BpiI	GAAGAC	1 cut(s)	724
BpmI	CTGGAG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	367, 877
BsaWI	WCCGGW	2 cut(s)	502, 904
Bse1I	ACTGG	2 cut(s)	708, 1028
Bse3DI	GCAATG	4 cut(s)	284, 745, 771, 870
BseAI	TCCGGA	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	367, 877
BseGI	GGATG	1 cut(s)	210
BseMI	GCAATG	4 cut(s)	284, 745, 771, 870
BseMII	CTCAG	2 cut(s)	59, 687
BseNI	ACTGG	2 cut(s)	708, 1028
BseRI	GAGGAG	1 cut(s)	768
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	5 cut(s)	245, 386, 644, 898, 1001
BseYI	CCCAGC	2 cut(s)	333, 617
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	5, 162, 951
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	3 cut(s)	13, 46, 471
BsiSI	CCGG	3 cut(s)	27, 503, 905
BsmAI	GTCTC	3 cut(s)	113, 123, 676
BsmBI	CGTCTC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	5, 162, 951
Bsp1286I	GDGCHC	3 cut(s)	13, 46, 471
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	713, 842
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	4 cut(s)	188, 434, 582, 818
BspANI	GGCC	3 cut(s)	5, 162, 951
BspCNI	CTCAG	2 cut(s)	58, 686
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	365, 580
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	850
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	578
BsrDI	GCAATG	4 cut(s)	284, 745, 771, 870
BsrI	ACTGG	2 cut(s)	708, 1028
BssECI	CCNNGG	2 cut(s)	367, 877
BssMI	GATC	2 cut(s)	713, 842
BssNAI	GTATAC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	367
Bst1107I	GTATAC	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	555, 670, 700
Bst6I	CTCTTC	2 cut(s)	243, 940
BstAPI	GCANNNNNTGC	2 cut(s)	224, 578
BstC8I	GCNNGC	2 cut(s)	33, 987
BstDEI	CTNAG	2 cut(s)	45, 673
BstF5I	GGATG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	716, 845
BstMAI	GTCTC	3 cut(s)	113, 123, 676
BstMBI	GATC	2 cut(s)	713, 842
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 224, 233, 380, 578, 641, 650
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	5 cut(s)	245, 386, 644, 898, 1001
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	1 cut(s)	842
BstYI	RGATCY	1 cut(s)	842
BstZ17I	GTATAC	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	5, 162, 951
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 551
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	33, 987
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	591, 1017
CviAII	CATG	4 cut(s)	136, 182, 320, 815
CviQI	GTAC	2 cut(s)	591, 1017
DdeI	CTNAG	2 cut(s)	45, 673
DpnI	GATC	2 cut(s)	715, 844
DpnII	GATC	2 cut(s)	713, 842
DraIII	CACNNNGTG	1 cut(s)	578
Eam1104I	CTCTTC	2 cut(s)	243, 940
EarI	CTCTTC	2 cut(s)	243, 940
Ecl136II	GAGCTC	2 cut(s)	44, 469
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	951
Eco24I	GRGCYC	2 cut(s)	46, 471
Eco53kI	GAGCTC	2 cut(s)	44, 469
Eco57I	CTGAAG	3 cut(s)	224, 718, 922
EcoICRI	GAGCTC	2 cut(s)	44, 469
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	46, 471
ErhI	CCWWGG	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	676
FaeI	CATG	4 cut(s)	139, 185, 323, 818
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FatI	CATG	4 cut(s)	135, 181, 319, 814
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	6 cut(s)	234, 375, 582, 633, 912, 990
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	46, 471
Fsp4HI	GCNGC	6 cut(s)	234, 375, 582, 633, 912, 990
FspBI	CTAG	6 cut(s)	62, 101, 359, 594, 837, 968
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	6 cut(s)	234, 375, 582, 633, 912, 990
GsaI	CCCAGC	2 cut(s)	337, 621
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	5, 162, 951
HapII	CCGG	3 cut(s)	27, 503, 905
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	139, 185, 323, 818
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	2 cut(s)	540, 874
HindII	GTYRAC	2 cut(s)	540, 874
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	3 cut(s)	622, 677, 901
HpaII	CCGG	3 cut(s)	27, 503, 905
Hpy166II	GTNNAC	4 cut(s)	11, 540, 558, 874
Hpy188I	TCNGA	3 cut(s)	676, 881, 941
Hpy188III	TCNNGA	4 cut(s)	262, 354, 503, 566
Hpy8I	GTNNAC	4 cut(s)	11, 540, 558, 874
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	3 cut(s)	555, 670, 700
HpyCH4IV	ACGT	2 cut(s)	415, 729
HpyCH4V	TGCA	5 cut(s)	11, 200, 218, 233, 985
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 224, 233, 380, 578, 641, 650
HpyF3I	CTNAG	2 cut(s)	45, 673
HpySE526I	ACGT	2 cut(s)	415, 729
Hsp92II	CATG	4 cut(s)	139, 185, 323, 818
HspAI	GCGC	1 cut(s)	303
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	713, 842
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	7 cut(s)	41, 371, 474, 505, 614, 781, 881
Lsp1109I	GCAGC	5 cut(s)	245, 386, 644, 898, 1001
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	6 cut(s)	62, 101, 359, 594, 837, 968
MaeII	ACGT	2 cut(s)	415, 729
MaeIII	GTNAC	2 cut(s)	763, 796
MalI	GATC	2 cut(s)	715, 844
MboI	GATC	2 cut(s)	713, 842
MboII	GAAGA	4 cut(s)	154, 230, 724, 957
MflI	RGATCY	1 cut(s)	842
MhlI	GDGCHC	3 cut(s)	13, 46, 471
MluCI	AATT	2 cut(s)	174, 561
MlyI	GAGTC	1 cut(s)	686
MnlI	CCTC	7 cut(s)	123, 180, 316, 789, 887, 935, 941
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	2 cut(s)	275, 293
MspI	CCGG	3 cut(s)	27, 503, 905
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	7 cut(s)	41, 224, 233, 380, 578, 641, 650
NciI	CCSGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	2 cut(s)	713, 842
NlaIII	CATG	4 cut(s)	139, 185, 323, 818
NlaIV	GGNNCC	2 cut(s)	365, 580
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	951
PciSI	GCTCTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	622, 901
PkrI	GCNGC	6 cut(s)	235, 376, 583, 634, 913, 991
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
PsiI	TTATAA	1 cut(s)	689
Psp124BI	GAGCTC	2 cut(s)	46, 471
PspFI	CCCAGC	2 cut(s)	333, 617
PspN4I	GGNNCC	2 cut(s)	365, 580
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	842
RsaI	GTAC	2 cut(s)	592, 1018
RsaNI	GTAC	2 cut(s)	591, 1017
SacI	GAGCTC	2 cut(s)	46, 471
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	275, 293
SatI	GCNGC	6 cut(s)	234, 375, 582, 633, 912, 990
Sau3AI	GATC	2 cut(s)	713, 842
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	3 cut(s)	13, 46, 471
SfaNI	GCATC	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	967
Sse9I	AATT	2 cut(s)	174, 561
SseBI	AGGCCT	1 cut(s)	951
SsiI	CCGC	4 cut(s)	188, 434, 582, 818
SspMI	CTAG	6 cut(s)	62, 101, 359, 594, 837, 968
SstI	GAGCTC	2 cut(s)	46, 471
StuI	AGGCCT	1 cut(s)	951
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	3 cut(s)	555, 670, 700
TaiI	ACGT	2 cut(s)	418, 732
TaqI	TCGA	4 cut(s)	15, 637, 712, 933
TasI	AATT	2 cut(s)	174, 561
TatI	WGTACW	1 cut(s)	590
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	622, 901
Tru1I	TTAA	2 cut(s)	275, 293
Tru9I	TTAA	2 cut(s)	275, 293
TscAI	CASTG	2 cut(s)	85, 558
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	5 cut(s)	233, 374, 632, 911, 989
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	3 cut(s)	59, 198, 621
TspRI	CASTG	2 cut(s)	85, 558
VneI	GTGCAC	1 cut(s)	9
XceI	RCATGY	1 cut(s)	818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	6 cut(s)	62, 101, 359, 594, 837, 968
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.