Rroxscaffold_5G00375410

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
56216161 .. 56223965
7805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375410.1

Sequence Viewer

Length: 1437 bp
ATGGAAAAAGGGTTGTTGTTAAAGGAAACAGAGGAAAAGAACAGAGAAGAAGGTGGTTATCAAAGATGTGGTGGGTTTGCTGGAGAAGTGAAGAGGTTGGGTTACATAGCAGGGCCTATGGTGGCCGTGAATCTGTCACAGTACTTTCTGCAGATCATTTCGATCATGATGGTTGGTCATTTGGGTCAGCTCTCTCTTTCCAGCACTGCTATTGCCATCTCCTTCTGTGCCGTCTCCGGCTTCAGTCTTATTTTCGGGATGGCCTGTGCACTCGAAACTCTCTCCGGGCAAGCATATGGAGCTCAGCAGTATCGACAGCTTGGACTTCATATAAGCACTGCTATCTTCTCTCTAATGCTAGTTTGTCTCCCTCTGTCTCTTGTGTGGATCTACATGGAGAAGATACTAATGTTGTTGGGCCAAGACCCTATAATTTCGCATGAAGCGGGTAAGTTTGCAAGGATGCTCTTACCTGCACTCTATGCTTATGCAGCTCTTCAGCCACTTTGTAAATATCTCCAGACACAAAGCTTAATCGTTCCATTGCTTTTAAGCTCTTGCGCCTCTGTGTGTTTCCATGTACTTGTCTGCTGGGTTTTGGTGTTCAAGTCTGGACTAGGAAACCTTGGAGCAGCTTTAGCCATAGGTATGTCTTATTGGTTGAATGTGGTTCTGCTCGTACTATATGTGAAGTACTCCAGCGCCTGTGCACATACCAGGTTTCAAATTTCTTTTGAAGTATTTCAAGGCATTGGAGAGTTCTTACGTTTTGCTATTCCATCTGCTGTTATGATTTGCCTTGAATGGTGGTCATTTGAGCTCCTTACCTTGATGGCAGGTTTTCTACCAAATCCGGAGCTTGAAACTTCAGTTTTATCTGTTTGTTTGTCAACTATCTCATCACTGTATACAATTCCAGAAGCACTTGGTGCCGCAGTAAGTACTAGAGTTTCAAATGAACTTGGAGCTGGGAATCCACAAGCAGCTCGATTAGCCGTTGTTGCTTCTATGTTCCTAACAGTCTCAGAGTCAGTCATTATAAGCTCAACCGTCTTTGCCAGTCGATCTGTTTTTGGCTACGTTTTCAGCAATGAGAAGGAAGTTGTGGATTATGTCACTTCCATTGCTCCTCTGGTTTGTCTATCAGTTATAACAGACAGCTTACATGCGGTTCTTTCTGGTATTGCTAGGGGATCTGGTTGGCAGGACTTGGCAATGTATGTCAACCTCGGAGCTTACTATCTTGCTGGGATTCCGGTTGCTGCTACATTGGGTTTCTGGTTCGACTTCAGAGGAAGAGGCCTTTGGATTGGAATACTAGTCGGTTCTTTTCTGCAAGCAGCCCTTTATTCTATCATAACAAGTTGTACGAACTGGGAAGAAAAGGCAAAGAAGGCGAGGGAGAGGATATTCGAGGAAACAGCTTTAGTAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

52.03

Weight (kDa)

6.33

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 39 - 199 4.2e-28 MatE
MatE PF01554 260 - 422 4.2e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1040, 1151
Acc36I ACCTGC 2 cut(s) 481, 827
AccB1I GGYRCC 1 cut(s) 929
AccI GTMKAC 1 cut(s) 908
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 3 cut(s) 446, 933, 1169
AclWI GGATC 2 cut(s) 395, 1201
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 726
AcuI CTGAAG 4 cut(s) 226, 482, 852, 1273
AdeI CACNNNGTG 1 cut(s) 929
AfaI GTAC 6 cut(s) 143, 582, 681, 695, 943, 1369
AgsI TTSAA 8 cut(s) 607, 664, 725, 737, 746, 803, 863, 954
AhlI ACTAGT 1 cut(s) 1318
AjnI CCWGG 1 cut(s) 716
AjuI GAANNNNNNNTTGG 2 cut(s) 1288, 1320
Alw21I GWGCWC 4 cut(s) 271, 304, 712, 822
Alw26I GTCTC 4 cut(s) 238, 371, 381, 1027
Alw44I GTGCAC 2 cut(s) 267, 708
AlwI GGATC 2 cut(s) 395, 1201
AlwNI CAGNNNCTG 1 cut(s) 705
Aor13HI TCCGGA 1 cut(s) 853
AoxI GGCC 5 cut(s) 113, 123, 261, 418, 1300
ApaLI GTGCAC 2 cut(s) 267, 708
ApeKI GCWGC 5 cut(s) 491, 632, 983, 1262, 1340
ApoI RAATTY 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 2 cut(s) 563, 704
AspS9I GGNCC 2 cut(s) 113, 418
AsuC2I CCSGG 1 cut(s) 286
BaeGI GKGCMC 2 cut(s) 271, 712
BaeI ACNNNNGTAYC 2 cut(s) 395, 428
BanI GGYRCC 1 cut(s) 929
BanII GRGCYC 2 cut(s) 304, 822
Bbv12I GWGCWC 4 cut(s) 271, 304, 712, 822
BbvI GCAGC 5 cut(s) 503, 644, 995, 1249, 1352
BccI CCATC 5 cut(s) 163, 224, 253, 787, 826
BceAI ACGGC 3 cut(s) 110, 215, 980
BciT130I CCWGG 1 cut(s) 718
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 4 cut(s) 238, 371, 381, 1027
BcuI ACTAGT 1 cut(s) 1318
BfaI CTAG 5 cut(s) 359, 617, 945, 1188, 1319
BfmI CTRYAG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 705
BfuAI ACCTGC 2 cut(s) 481, 827
BisI GCNGC 6 cut(s) 492, 633, 933, 984, 1263, 1341
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 6 cut(s) 493, 634, 934, 985, 1264, 1342
BmcAI AGTACT 3 cut(s) 143, 695, 943
Bme1390I CCNGG 2 cut(s) 286, 718
BmgT120I GGNCC 2 cut(s) 113, 418
BmiI GGNNCC 1 cut(s) 931
BmrFI CCNGG 2 cut(s) 286, 718
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 1384
BpmI CTGGAG 3 cut(s) 102, 503, 682
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 625, 1228
BsaWI WCCGGW 2 cut(s) 853, 1255
Bse1I ACTGG 2 cut(s) 1059, 1379
Bse3DI GCAATG 4 cut(s) 542, 1096, 1122, 1221
BseAI TCCGGA 1 cut(s) 853
BseBI CCWGG 1 cut(s) 718
BseDI CCNNGG 2 cut(s) 625, 1228
BseGI GGATG 2 cut(s) 264, 468
BseMI GCAATG 4 cut(s) 542, 1096, 1122, 1221
BseMII CTCAG 2 cut(s) 317, 1038
BseNI ACTGG 2 cut(s) 1059, 1379
BseRI GAGGAG 1 cut(s) 1119
BseSI GKGCMC 2 cut(s) 271, 712
BseXI GCAGC 5 cut(s) 503, 644, 995, 1249, 1352
BseYI CCCAGC 3 cut(s) 591, 968, 1247
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 5 cut(s) 115, 125, 263, 420, 1302
BshNI GGYRCC 1 cut(s) 929
BsiHKAI GWGCWC 4 cut(s) 271, 304, 712, 822
BsiSI CCGG 4 cut(s) 237, 285, 854, 1256
BsmAI GTCTC 4 cut(s) 238, 371, 381, 1027
BsmBI CGTCTC 1 cut(s) 238
BsnI GGCC 5 cut(s) 115, 125, 263, 420, 1302
Bsp1286I GDGCHC 4 cut(s) 271, 304, 712, 822
Bsp13I TCCGGA 1 cut(s) 853
Bsp143I GATC 5 cut(s) 153, 162, 387, 1064, 1193
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 3 cut(s) 446, 933, 1169
BspANI GGCC 5 cut(s) 115, 125, 263, 420, 1302
BspCNI CTCAG 2 cut(s) 316, 1037
BspEI TCCGGA 1 cut(s) 853
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 931
BspMAI CTGCAG 1 cut(s) 153
BspMI ACCTGC 2 cut(s) 481, 827
BspPI GGATC 2 cut(s) 395, 1201
BspQI GCTCTTC 1 cut(s) 501
BspT107I GGYRCC 1 cut(s) 929
BsrDI GCAATG 4 cut(s) 542, 1096, 1122, 1221
BsrI ACTGG 2 cut(s) 1059, 1379
BssECI CCNNGG 2 cut(s) 625, 1228
BssMI GATC 5 cut(s) 153, 162, 387, 1064, 1193
BssNAI GTATAC 1 cut(s) 909
BssT1I CCWWGG 1 cut(s) 625
Bst1107I GTATAC 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 4 cut(s) 141, 906, 1021, 1051
Bst6I CTCTTC 3 cut(s) 86, 501, 1291
BstAPI GCANNNNNTGC 2 cut(s) 482, 929
BstC8I GCNNGC 2 cut(s) 291, 1338
BstDEI CTNAG 2 cut(s) 303, 1024
BstF5I GGATG 2 cut(s) 264, 468
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 2 cut(s) 563, 704
BstKTI GATC 5 cut(s) 156, 165, 390, 1067, 1196
BstMAI GTCTC 4 cut(s) 238, 371, 381, 1027
BstMBI GATC 5 cut(s) 153, 162, 387, 1064, 1193
BstMWI GCNNNNNNNGC 8 cut(s) 299, 482, 491, 638, 929, 992, 1001, 1394
BstNI CCWGG 1 cut(s) 718
BstNSI RCATGY 1 cut(s) 1169
BstSCI CCNGG 2 cut(s) 284, 716
BstSFI CTRYAG 1 cut(s) 149
BstSLI GKGCMC 2 cut(s) 271, 712
BstV1I GCAGC 5 cut(s) 503, 644, 995, 1249, 1352
BstX2I RGATCY 2 cut(s) 387, 1193
BstYI RGATCY 2 cut(s) 387, 1193
BstZ17I GTATAC 1 cut(s) 909
BsuRI GGCC 5 cut(s) 115, 125, 263, 420, 1302
BtsCI GGATG 2 cut(s) 264, 468
BtsI GCAGTG 2 cut(s) 204, 336
BtsIMutI CAGTG 3 cut(s) 204, 336, 902
BveI ACCTGC 2 cut(s) 481, 827
Cac8I GCNNGC 2 cut(s) 291, 1338
CaiI CAGNNNCTG 1 cut(s) 705
CciI TCATGA 1 cut(s) 165
CfoI GCGC 2 cut(s) 563, 704
Cfr13I GGNCC 2 cut(s) 113, 418
CsiI ACCWGGT 1 cut(s) 716
Csp6I GTAC 6 cut(s) 142, 581, 680, 694, 942, 1368
CviAII CATG 5 cut(s) 166, 394, 440, 578, 1166
CviQI GTAC 6 cut(s) 142, 581, 680, 694, 942, 1368
DdeI CTNAG 2 cut(s) 303, 1024
DpnI GATC 5 cut(s) 155, 164, 389, 1066, 1195
DpnII GATC 5 cut(s) 153, 162, 387, 1064, 1193
DraIII CACNNNGTG 1 cut(s) 929
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 86, 501, 1291
EarI CTCTTC 3 cut(s) 86, 501, 1291
Ecl136II GAGCTC 2 cut(s) 302, 820
Eco130I CCWWGG 1 cut(s) 625
Eco147I AGGCCT 1 cut(s) 1302
Eco24I GRGCYC 2 cut(s) 304, 822
Eco53kI GAGCTC 2 cut(s) 302, 820
Eco57I CTGAAG 4 cut(s) 226, 482, 852, 1273
EcoICRI GAGCTC 2 cut(s) 302, 820
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 716
EcoT14I CCWWGG 1 cut(s) 625
EcoT38I GRGCYC 2 cut(s) 304, 822
ErhI CCWWGG 1 cut(s) 625
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 5 cut(s) 169, 397, 443, 581, 1169
FalI AAGNNNNNCTT 2 cut(s) 1329, 1361
FatI CATG 5 cut(s) 165, 393, 439, 577, 1165
FauI CCCGC 1 cut(s) 439
FauNDI CATATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 6 cut(s) 492, 633, 933, 984, 1263, 1341
FokI GGATG 2 cut(s) 271, 475
FriOI GRGCYC 2 cut(s) 304, 822
Fsp4HI GCNGC 6 cut(s) 492, 633, 933, 984, 1263, 1341
FspBI CTAG 5 cut(s) 359, 617, 945, 1188, 1319
GlaI GCGC 2 cut(s) 562, 703
GluI GCNGC 6 cut(s) 492, 633, 933, 984, 1263, 1341
GsaI CCCAGC 3 cut(s) 595, 972, 1251
GsuI CTGGAG 3 cut(s) 102, 503, 682
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 5 cut(s) 115, 125, 263, 420, 1302
HapII CCGG 4 cut(s) 237, 285, 854, 1256
HhaI GCGC 2 cut(s) 563, 704
Hin1II CATG 5 cut(s) 169, 397, 443, 581, 1169
Hin6I GCGC 2 cut(s) 561, 702
HinP1I GCGC 2 cut(s) 561, 702
HincII GTYRAC 2 cut(s) 891, 1225
HindII GTYRAC 2 cut(s) 891, 1225
HindIII AAGCTT 1 cut(s) 529
HinfI GANTC 4 cut(s) 130, 973, 1028, 1252
HpaII CCGG 4 cut(s) 237, 285, 854, 1256
Hpy166II GTNNAC 5 cut(s) 269, 710, 891, 909, 1225
Hpy188I TCNGA 3 cut(s) 1027, 1232, 1292
Hpy188III TCNNGA 6 cut(s) 166, 256, 520, 612, 854, 917
Hpy8I GTNNAC 5 cut(s) 269, 710, 891, 909, 1225
HpyAV CCTTC 4 cut(s) 44, 232, 1090, 1387
HpyCH4III ACNGT 4 cut(s) 141, 906, 1021, 1051
HpyCH4IV ACGT 2 cut(s) 766, 1080
HpyCH4V TGCA 7 cut(s) 151, 269, 458, 476, 491, 710, 1336
HpyF10VI GCNNNNNNNGC 8 cut(s) 299, 482, 491, 638, 929, 992, 1001, 1394
HpyF3I CTNAG 2 cut(s) 303, 1024
HpySE526I ACGT 2 cut(s) 766, 1080
Hsp92II CATG 5 cut(s) 169, 397, 443, 581, 1169
HspAI GCGC 2 cut(s) 561, 702
Kpn2I TCCGGA 1 cut(s) 853
Kzo9I GATC 5 cut(s) 153, 162, 387, 1064, 1193
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 7 cut(s) 299, 629, 825, 856, 965, 1132, 1232
Lsp1109I GCAGC 5 cut(s) 503, 644, 995, 1249, 1352
LweI GCATC 1 cut(s) 453
MabI ACCWGGT 1 cut(s) 716
MaeI CTAG 5 cut(s) 359, 617, 945, 1188, 1319
MaeII ACGT 2 cut(s) 766, 1080
MaeIII GTNAC 3 cut(s) 101, 135, 1114
MalI GATC 5 cut(s) 155, 164, 389, 1066, 1195
MboI GATC 5 cut(s) 153, 162, 387, 1064, 1193
MboII GAAGA 7 cut(s) 59, 103, 337, 412, 488, 1308, 1391
MflI RGATCY 2 cut(s) 387, 1193
MhlI GDGCHC 4 cut(s) 271, 304, 712, 822
MluCI AATT 3 cut(s) 432, 726, 912
MlyI GAGTC 1 cut(s) 1037
MroI TCCGGA 1 cut(s) 853
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 3 cut(s) 20, 533, 551
MslI CAYNNNNRTG 1 cut(s) 647
MspI CCGG 4 cut(s) 237, 285, 854, 1256
MspR9I CCNGG 2 cut(s) 286, 718
MvaI CCWGG 1 cut(s) 718
MwoI GCNNNNNNNGC 8 cut(s) 299, 482, 491, 638, 929, 992, 1001, 1394
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 295
NdeII GATC 5 cut(s) 153, 162, 387, 1064, 1193
NlaIII CATG 5 cut(s) 169, 397, 443, 581, 1169
NlaIV GGNNCC 1 cut(s) 931
NmuCI GTSAC 2 cut(s) 135, 1114
NspI RCATGY 1 cut(s) 1169
PagI TCATGA 1 cut(s) 165
PceI AGGCCT 1 cut(s) 1302
PciSI GCTCTTC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 3 cut(s) 130, 973, 1252
PkrI GCNGC 6 cut(s) 493, 634, 934, 985, 1264, 1342
PleI GAGTC 1 cut(s) 1036
PpsI GAGTC 1 cut(s) 1036
PsiI TTATAA 2 cut(s) 1040, 1151
Psp124BI GAGCTC 2 cut(s) 304, 822
Psp6I CCWGG 1 cut(s) 716
PspFI CCCAGC 3 cut(s) 591, 968, 1247
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 931
PspPI GGNCC 2 cut(s) 113, 418
PstI CTGCAG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 705
PsuI RGATCY 2 cut(s) 387, 1193
RsaI GTAC 6 cut(s) 143, 582, 681, 695, 943, 1369
RsaNI GTAC 6 cut(s) 142, 581, 680, 694, 942, 1368
RseI CAYNNNNRTG 1 cut(s) 647
SacI GAGCTC 2 cut(s) 304, 822
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 3 cut(s) 20, 533, 551
SatI GCNGC 6 cut(s) 492, 633, 933, 984, 1263, 1341
Sau3AI GATC 5 cut(s) 153, 162, 387, 1064, 1193
Sau96I GGNCC 2 cut(s) 113, 418
ScaI AGTACT 3 cut(s) 143, 695, 943
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 2 cut(s) 286, 718
SduI GDGCHC 4 cut(s) 271, 304, 712, 822
SexAI ACCWGGT 1 cut(s) 716
SfaNI GCATC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 647
SpeI ACTAGT 1 cut(s) 1318
Sse9I AATT 3 cut(s) 432, 726, 912
SseBI AGGCCT 1 cut(s) 1302
SsiI CCGC 3 cut(s) 446, 933, 1169
SspMI CTAG 5 cut(s) 359, 617, 945, 1188, 1319
SstI GAGCTC 2 cut(s) 304, 822
StuI AGGCCT 1 cut(s) 1302
StyD4I CCNGG 2 cut(s) 284, 716
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 4 cut(s) 141, 906, 1021, 1051
TaiI ACGT 2 cut(s) 769, 1083
TaqI TCGA 7 cut(s) 161, 273, 313, 988, 1063, 1284, 1413
TasI AATT 3 cut(s) 432, 726, 912
TatI WGTACW 4 cut(s) 141, 580, 693, 941
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 3 cut(s) 130, 973, 1252
Tru1I TTAA 3 cut(s) 20, 533, 551
Tru9I TTAA 3 cut(s) 20, 533, 551
TscAI CASTG 3 cut(s) 211, 343, 909
TseFI GTSAC 2 cut(s) 135, 1114
TseI GCWGC 5 cut(s) 491, 632, 983, 1262, 1340
Tsp45I GTSAC 2 cut(s) 135, 1114
TspDTI ATGAA 3 cut(s) 317, 456, 972
TspRI CASTG 3 cut(s) 211, 343, 909
VneI GTGCAC 2 cut(s) 267, 708
XapI RAATTY 1 cut(s) 726
XceI RCATGY 1 cut(s) 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 1129
XmiI GTMKAC 1 cut(s) 908
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 5 cut(s) 359, 617, 945, 1188, 1319
ZrmI AGTACT 3 cut(s) 143, 695, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.