Rorug04G0272600

cyclin-D1-binding protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002414
Physical Location & Seq
Reverse (-)
44516402 .. 44517299
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0272600.1

Sequence Viewer

Length: 444 bp
ATGAAACCGAGTTCACCTCCGTCATCCCACCAGCTAGATTGTACGTTCAGGTCTTTCATTCTTGATGTGGACAATCTCATCCCGAAGATTGCACCTCAAGCAATCAAGGGTACTGAAATCCTTCAAGGTGATGGAGGGCCTGGAACCATCAAGAAAGTTACCTTTGGGGAAGGCAGTCAGTTCGGCTCTGTAACGCACAAGATCGACGGGATTGACAAAGATAACTTCGTTTACAATTACAGTTTGATTGAAGGAGATGTGTTATCTGATCACAAGATTGAGAAGGTCTCTTACGAGACCAAATTGCTTGCATCTGCCGATGGAGGAACTGTGGTTAAAAGCATCAGTAACTACCACACCATTGCTGATGTTGAGATCAAAGAAGAGCATGTTAAGGCTGGAAAAGAGAAGGCATCTCAGCTCTTCAAGCTGGTTGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCIP

Protein Analysis

147

Amino Acids

15.93

Weight (kDa)

5.7

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 23 - 133 5.8e-17 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 43, 112
AgsI TTSAA 4 cut(s) 125, 251, 427, 437
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 3 cut(s) 34, 421, 430
AluI AGCT 3 cut(s) 34, 421, 430
Alw26I GTCTC 2 cut(s) 290, 292
AoxI GGCC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 6, 140
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BccI CCATC 3 cut(s) 125, 155, 314
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 290, 292
BfaI CTAG 2 cut(s) 35, 442
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 3 cut(s) 320, 351, 422
BplI GAGNNNNNCTC 3 cut(s) 33, 272, 304
BpuEI CTTGAG 1 cut(s) 81
BsaI GGTCTC 2 cut(s) 290, 292
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 23, 78
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 431
BshFI GGCC 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 290, 292
BsnI GGCC 1 cut(s) 139
Bso31I GGTCTC 2 cut(s) 290, 292
Bsp143I GATC 3 cut(s) 201, 268, 375
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 145
BspQI GCTCTTC 2 cut(s) 378, 428
BspTNI GGTCTC 2 cut(s) 290, 292
BsrDI GCAATG 1 cut(s) 360
BssMI GATC 3 cut(s) 201, 268, 375
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 242, 331
Bst6I CTCTTC 2 cut(s) 378, 428
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 23, 78
BstKTI GATC 3 cut(s) 204, 271, 378
BstMAI GTCTC 2 cut(s) 290, 292
BstMBI GATC 3 cut(s) 201, 268, 375
BstMWI GCNNNNNNNGC 2 cut(s) 98, 427
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 23, 78
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 42, 111
CviAII CATG 1 cut(s) 389
CviJI RGCY 7 cut(s) 34, 139, 186, 398, 421, 430, 441
CviKI_1 RGCY 7 cut(s) 34, 139, 186, 398, 421, 430, 441
CviQI GTAC 2 cut(s) 42, 111
DdeI CTNAG 1 cut(s) 417
DpnI GATC 3 cut(s) 203, 270, 377
DpnII GATC 3 cut(s) 201, 268, 375
Eam1104I CTCTTC 2 cut(s) 378, 428
EarI CTCTTC 2 cut(s) 378, 428
Eco31I GGTCTC 2 cut(s) 290, 292
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 392
FaiI YATR 1 cut(s) 390
FatI CATG 1 cut(s) 388
FbaI TGATCA 1 cut(s) 268
FokI GGATG 2 cut(s) 10, 65
FspBI CTAG 2 cut(s) 35, 442
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 1 cut(s) 392
HphI GGTGA 2 cut(s) 6, 140
Hpy166II GTNNAC 3 cut(s) 14, 70, 232
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 62, 82, 151
Hpy8I GTNNAC 3 cut(s) 14, 70, 232
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 6 cut(s) 131, 164, 245, 277, 403, 431
HpyCH4III ACNGT 2 cut(s) 242, 331
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 92, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 427
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 201, 268, 375
LguI GCTCTTC 2 cut(s) 378, 428
LpnPI CCDG 6 cut(s) 34, 44, 126, 153, 384, 416
LweI GCATC 3 cut(s) 320, 351, 422
MaeI CTAG 2 cut(s) 35, 442
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 3 cut(s) 157, 190, 347
MalI GATC 3 cut(s) 203, 270, 377
MboI GATC 3 cut(s) 201, 268, 375
MboII GAAGA 3 cut(s) 97, 395, 415
MluCI AATT 2 cut(s) 235, 302
MnlI CCTC 4 cut(s) 27, 105, 128, 317
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 336, 393
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 98, 427
NdeII GATC 3 cut(s) 201, 268, 375
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 1 cut(s) 145
NspI RCATGY 1 cut(s) 392
PciSI GCTCTTC 2 cut(s) 378, 428
PdmI GAANNNNTTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 137
RsaI GTAC 2 cut(s) 43, 112
RsaNI GTAC 2 cut(s) 42, 111
SapI GCTCTTC 2 cut(s) 378, 428
SaqAI TTAA 2 cut(s) 336, 393
Sau3AI GATC 3 cut(s) 201, 268, 375
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 141
SfaNI GCATC 3 cut(s) 320, 351, 422
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 235, 302
SspMI CTAG 2 cut(s) 35, 442
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 242, 331
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 235, 302
Tru1I TTAA 2 cut(s) 336, 393
Tru9I TTAA 2 cut(s) 336, 393
TspDTI ATGAA 2 cut(s) 17, 46
TspGWI ACGGA 1 cut(s) 9
XceI RCATGY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 35, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.