Rh2CG573900

cyclin-D1-binding protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002414
Physical Location & Seq
Reverse (-)
75298372 .. 75301168
2797 bp
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UTR
Exon/CDS
Intron
Rh2CG573900.1

Sequence Viewer

Length: 363 bp
ATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGCTTGAAGAAAACATGACTGCCTACTTTAATATGCTACAAGGTTTTCTTCTTCTTTCACATGGGAGTATGGTTGGTGCAGAGCCTACTCTTTCTTCTTGTGTCCGCGCATCTGTAAAGCAAGTTGTTGACTCTAGTTTTAAGTTGATGAAGGAATCTATCTCGTTGTATGGAGCAGTGAATAAAGACTGGAAACTGTCGATTCCACAGTTGGCTGGTGCAATATGGGAAGCCTGTTTTTCTCTTAAGAAGACCCCTGCCACAAATGTCATAGCAATTAGCTATTGTAATTGCTCTCTGTTTGTTATGGTGCAGTTTAGTATTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCIP

Protein Analysis

120

Amino Acids

13.27

Weight (kDa)

7.6

Isoelectric Point (pI)

23.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCIP_N PF13324 1 - 105 1.2e-25 Grap2 and cyclin-D-interacting, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 139
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 2 cut(s) 29, 315
AluI AGCT 2 cut(s) 29, 315
AspLEI GCGC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 290
BfaI CTAG 2 cut(s) 30, 168
BfrI CTTAAG 1 cut(s) 278
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 141
BspACI CCGC 1 cut(s) 139
BspFNI CGCG 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 231, 243
BstAFI CTTAAG 1 cut(s) 278
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 143
BstUI CGCG 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
CfoI GCGC 1 cut(s) 143
CviAII CATG 2 cut(s) 49, 95
CviJI RGCY 5 cut(s) 29, 118, 248, 266, 315
CviKI_1 RGCY 5 cut(s) 29, 118, 248, 266, 315
FaeI CATG 2 cut(s) 52, 98
FaiI YATR 8 cut(s) 50, 68, 96, 104, 204, 259, 305, 341
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 2 cut(s) 48, 94
FspBI CTAG 2 cut(s) 30, 168
GlaI GCGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 52, 98
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 3 cut(s) 164, 188, 235
Hpy166II GTNNAC 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 231, 243
HpyCH4V TGCA 3 cut(s) 113, 254, 346
Hsp92II CATG 2 cut(s) 52, 98
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 208, 234, 280, 303
LweI GCATC 1 cut(s) 152
MaeI CTAG 2 cut(s) 30, 168
MboII GAAGA 5 cut(s) 53, 74, 77, 120, 295
MluCI AATT 2 cut(s) 309, 322
MlyI GAGTC 1 cut(s) 158
MseI TTAA 3 cut(s) 63, 174, 279
MspCI CTTAAG 1 cut(s) 278
MvnI CGCG 1 cut(s) 141
NlaIII CATG 2 cut(s) 52, 98
PfeI GAWTC 2 cut(s) 188, 235
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
SaqAI TTAA 3 cut(s) 63, 174, 279
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 31, 79, 317
SfaNI GCATC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 2 cut(s) 309, 322
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 30, 168
TaaI ACNGT 2 cut(s) 231, 243
TaqI TCGA 1 cut(s) 233
TasI AATT 2 cut(s) 309, 322
TfiI GAWTC 2 cut(s) 188, 235
Tru1I TTAA 3 cut(s) 63, 174, 279
Tru9I TTAA 3 cut(s) 63, 174, 279
TscAI CASTG 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 278
XspI CTAG 2 cut(s) 30, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.