Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002775.1

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Reverse (-)

195698 .. 198419

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002775.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atggttgtgtctggcagttggcaggctatcagcccagttgaagtgcagggtattatagctttggttaatgtgctaattagtattcagaataaagtctataaaaagccaaccattctaattgcaactaggataactggggaaaaggagattccagatggagtagttgttgtcctgacacctgataagccagatgttctatctcatgtctctataagagcaagaaatagcaaggtatgctttgccacctgctttgatacgaatcttctcagggatctcaaggctccgacccctcaaaccctaaatcaaagctcgtctggaccgtctcgacatctgcggtacggcctcgtcgtcggacataagcttcgatcttgcttgaacaacattgatggcgagccggaggtgatgcagaggcgtttgaagagagaagcgtggagcccaaatagagcagagtcgtcgagagaagccaatttcgggtttcgaccgatggaaaattgcataattttcagcggcagcaactgcaaactagtggacgcgccatcggcggcagcggcggagattggaatgatttggagtggagaaagagtagaagctagagtgtttgaagaaaacatgattgcctactttaatatgctacaaggttttcttcttctttcacatgggagtatggttggtgcaggacctactctttcttcttgtgtccacgcatctgtaaagcaagttgttgactccagttttaagttgatgaaggaatctatctcgttgtatggagcagtgaataaagactggaaactgtcgattccacagttggctggtgcagtatgggaagcctgttttgatcttaagaagacccctgccacaaatgtcatagcaattagctattgtaattgctctctgttcgttatggtgcaatttagtatttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

307

Amino Acids

33.65

Weight (kDa)

8.78

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccII	CGCG	1 cut(s)	533
AciI	CCGC	5 cut(s)	334, 507, 542, 548, 551
AclWI	GGATC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	471
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	41, 376, 418, 602
AhlI	ACTAGT	1 cut(s)	523
AluBI	AGCT	5 cut(s)	59, 309, 361, 590, 876
AluI	AGCT	5 cut(s)	59, 309, 361, 590, 876
Alw26I	GTCTC	2 cut(s)	211, 327
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	516
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	510, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	317, 677
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	2 cut(s)	317, 677
BanII	GRGCYC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	851
BbvI	GCAGC	2 cut(s)	522, 557
BccI	CCATC	4 cut(s)	149, 380, 478, 544
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BcoDI	GTCTC	2 cut(s)	211, 327
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	3 cut(s)	126, 524, 591
BfrI	CTTAAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	5 cut(s)	508, 511, 543, 546, 549
BlsI	GCNGC	5 cut(s)	509, 512, 544, 547, 550
Bme18I	GGWCC	2 cut(s)	317, 677
BmgT120I	GGNCC	2 cut(s)	317, 677
BmiI	GGNNCC	2 cut(s)	282, 434
BmrI	ACTGGG	2 cut(s)	29, 144
BmsI	GCATC	2 cut(s)	393, 713
BmuI	ACTGGG	2 cut(s)	29, 144
BpiI	GAAGAC	1 cut(s)	851
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	4 cut(s)	35, 139, 729, 788
Bse8I	GATNNNNATC	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	4 cut(s)	35, 139, 729, 788
BseXI	GCAGC	2 cut(s)	522, 557
BsgI	GTGCAG	3 cut(s)	65, 693, 834
Bsh1236I	CGCG	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	2 cut(s)	211, 327
BsmBI	CGTCTC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	271, 365, 835
BspACI	CCGC	5 cut(s)	334, 507, 542, 548, 551
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	2 cut(s)	282, 434
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	839
BsrI	ACTGG	4 cut(s)	35, 139, 729, 788
BssMI	GATC	3 cut(s)	271, 365, 835
Bst4CI	ACNGT	3 cut(s)	321, 792, 804
Bst6I	CTCTTC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	839
BstAPI	GCANNNNNTGC	2 cut(s)	234, 516
BstC8I	GCNNGC	2 cut(s)	24, 392
BstDEI	CTNAG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	3 cut(s)	274, 368, 838
BstMAI	GTCTC	2 cut(s)	211, 327
BstMBI	GATC	3 cut(s)	271, 365, 835
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 516, 539, 548
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	522, 557
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	24, 392
CaiI	CAGNNNCTG	1 cut(s)	516
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	317, 677
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	203, 610, 656
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	3 cut(s)	273, 367, 837
DpnII	GATC	3 cut(s)	271, 365, 835
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	2 cut(s)	317, 677
EcoO109I	RGGNCCY	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	3 cut(s)	206, 613, 659
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 627, 659
FatI	CATG	3 cut(s)	202, 609, 655
Fnu4HI	GCNGC	5 cut(s)	508, 511, 543, 546, 549
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	5 cut(s)	508, 511, 543, 546, 549
FspBI	CTAG	3 cut(s)	126, 524, 591
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	5 cut(s)	508, 511, 543, 546, 549
GsuI	CTGGAG	1 cut(s)	712
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	3 cut(s)	206, 613, 659
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	6 cut(s)	148, 259, 449, 725, 749, 796
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	3 cut(s)	529, 700, 724
Hpy188I	TCNGA	3 cut(s)	87, 285, 353
Hpy188III	TCNNGA	5 cut(s)	152, 172, 315, 324, 456
Hpy8I	GTNNAC	3 cut(s)	529, 700, 724
Hpy99I	CGWCG	3 cut(s)	350, 353, 457
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	3 cut(s)	321, 792, 804
HpyCH4V	TGCA	8 cut(s)	46, 122, 406, 495, 519, 674, 815, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 516, 539, 548
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	206, 613, 659
HspAI	GCGC	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	271, 365, 835
LmnI	GCTCC	3 cut(s)	286, 432, 767
Lsp1109I	GCAGC	2 cut(s)	522, 557
LweI	GCATC	2 cut(s)	393, 713
MaeI	CTAG	3 cut(s)	126, 524, 591
MalI	GATC	3 cut(s)	273, 367, 837
MboI	GATC	3 cut(s)	271, 365, 835
MboII	GAAGA	7 cut(s)	254, 430, 614, 635, 638, 681, 856
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	8 cut(s)	75, 117, 466, 490, 498, 870, 883, 908
MlyI	GAGTC	2 cut(s)	458, 719
MmeI	TCCRAC	2 cut(s)	308, 331
MnlI	CCTC	4 cut(s)	300, 353, 391, 402
MseI	TTAA	4 cut(s)	66, 624, 735, 840
MspA1I	CMGCKG	2 cut(s)	507, 548
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	4 cut(s)	234, 516, 539, 548
NdeII	GATC	3 cut(s)	271, 365, 835
NlaIII	CATG	3 cut(s)	206, 613, 659
NlaIV	GGNNCC	2 cut(s)	282, 434
PaqCI	CACCTGC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	317, 345
PfeI	GAWTC	4 cut(s)	148, 259, 749, 796
PkrI	GCNGC	5 cut(s)	509, 512, 544, 547, 550
PleI	GAGTC	2 cut(s)	457, 719
PpsI	GAGTC	2 cut(s)	457, 719
PpuMI	RGGWCCY	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	677
PspN4I	GGNNCC	2 cut(s)	282, 434
PspPI	GGNCC	2 cut(s)	317, 677
PspPPI	RGGWCCY	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	66, 624, 735, 840
SatI	GCNGC	5 cut(s)	508, 511, 543, 546, 549
Sau3AI	GATC	3 cut(s)	271, 365, 835
Sau96I	GGNCC	2 cut(s)	317, 677
SchI	GAGTC	2 cut(s)	458, 719
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	393, 713
SinI	GGWCC	2 cut(s)	317, 677
SmlI	CTYRAG	2 cut(s)	275, 839
SmoI	CTYRAG	2 cut(s)	275, 839
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	8 cut(s)	75, 117, 466, 490, 498, 870, 883, 908
SsiI	CCGC	5 cut(s)	334, 507, 542, 548, 551
SspMI	CTAG	3 cut(s)	126, 524, 591
TaaI	ACNGT	3 cut(s)	321, 792, 804
TaqI	TCGA	5 cut(s)	325, 364, 455, 478, 794
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	8 cut(s)	75, 117, 466, 490, 498, 870, 883, 908
TauI	GCSGC	3 cut(s)	510, 545, 551
TfiI	GAWTC	4 cut(s)	148, 259, 749, 796
Tru1I	TTAA	4 cut(s)	66, 624, 735, 840
Tru9I	TTAA	4 cut(s)	66, 624, 735, 840
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	2 cut(s)	510, 545
TspDTI	ATGAA	1 cut(s)	758
TspRI	CASTG	1 cut(s)	777
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	2 cut(s)	317, 677
XspI	CTAG	3 cut(s)	126, 524, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.