Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

49903881 .. 49911396

Gene Structure 7516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAAAAAGGGTTGTTGTTAAAGGAAACAGAGAAGGAGAACAGAGAAGAAGGTGGTTATCAACGATATGGTGGGTTTGTTGGAGAAGTGAAGAGGTTGGGTTACATAGCAGGGCCTATGGTGGCCGTGAATCTGTCACAGTACTTTCTGCAGATCATTTCGATCATGATGGTTGGTCATTTGGGTCAGCTCTCTCTTTCCAGCACTGCTATTGCCATCTCCTTCTGTGCCGTCTCCGGCTTCAGTCTTATTTTCGGGATGGCCTGTGCGCTCGAAACTCTCTCCGGGCAAGCATATGGAGCTCAGCAGTATCGACAGCTAGGACTTCATATAAGCACTGCTATCTTCTCTCTAATGCTAGTTTGTCTCCCTCTGTCTCTTGTGTGGATCTACATGGAGAAGATACTAATGTTGTTGGGCCAAGACCCTCTAATTTCGCATGAAGCGGGAAACCTTGGAGCAGCTTTGGCCATTGGTATGTCTTATTGGTTGAATGTGGTTCTGCTCGTACTATATGTGAAGTACTCCAGCGCCTGTGCACATACCAGGGTTCAAATTTCTTTTGAAGTATTTCAAGGCATTGGAGAGTTCTTACGTTTTGCTGTTCCATCTGCTGTAATGATTTGCCTTGAATGGTGGTCATTTGAGCTCCTTACCTTGATGGCTGGTTTTCTACCAAATCCGGAGCTTGAAACTTCAGTTTTGTCTGTTTGTTTGTCAACTCTCTCATCACTGTATACAATTCCAGAAGCACTTGGTGCCGCAGTAAGTACTAGAGTTTCAAATGAACTTGGAGCTGGGAATCCACAAGCAGCTCGATTAGCTGTTGTTGCTTCTATGTTCCTAACCGTCTCAGAGTCAGTCATTATAAGCTCAACCGTCTTTGCCAGTCGATCTGTTTTTGGCTACGTTTTCAGCAATGAGAAGGAAGTTGTGGATTATGTCACTTCCATTGCTCCTCTGGTTTGTCTATCAGTATTAGAAGCTACGGCTCAAAGTGTTCTCTTCTTAATTTTCTTTTGTCTGAGTTCAGGTATTGCTAGGGGATCTGGTTGGCAGGACTTGGCAATGTATGTCAACCTCGGAGCTTACTATCTTGTTGGGATTCCGGTTGCTGCCACATTGGGTTTCTGGTTCGCCTTCAGAGGAAGAGGCCTTTGGATTGGAATACTAGTCGGTTCTTTTCTGCAAGCAGCCCTTTATTCTATCATAACAAGTTGTACGAACTGGGAAGAAAAGGCAAAGAAGGCGAGGGAGAGGATATTTGAGGAAACAGCTTTAGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

429

Amino Acids

46.7

Weight (kDa)

5.54

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	39 - 160	4e-21	MatE
MatE	PF01554	203 - 373	1.2e-24	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AccB1I	GGYRCC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	737
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	2 cut(s)	446, 762
AclWI	GGATC	2 cut(s)	395, 1054
AcoI	YGGCCR	2 cut(s)	123, 468
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	3 cut(s)	226, 681, 1126
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	5 cut(s)	143, 510, 524, 772, 1222
AgsI	TTSAA	7 cut(s)	493, 554, 566, 575, 632, 692, 783
AhlI	ACTAGT	1 cut(s)	1171
AjnI	CCWGG	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	1141, 1173
Alw21I	GWGCWC	3 cut(s)	304, 541, 651
Alw26I	GTCTC	4 cut(s)	238, 371, 381, 856
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	2 cut(s)	395, 1054
AlwNI	CAGNNNCTG	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	6 cut(s)	113, 123, 261, 418, 468, 1153
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	4 cut(s)	461, 812, 1115, 1193
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	271, 533
AspS9I	GGNCC	2 cut(s)	113, 418
AsuC2I	CCSGG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	304, 651
Bbv12I	GWGCWC	3 cut(s)	304, 541, 651
BbvI	GCAGC	4 cut(s)	473, 824, 1102, 1205
BccI	CCATC	5 cut(s)	163, 224, 253, 616, 655
BceAI	ACGGC	3 cut(s)	110, 215, 1005
BciT130I	CCWGG	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	4 cut(s)	238, 371, 381, 856
BcuI	ACTAGT	1 cut(s)	1171
BfaI	CTAG	5 cut(s)	320, 359, 774, 1041, 1172
BfmI	CTRYAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	534
BisI	GCNGC	5 cut(s)	462, 762, 813, 1116, 1194
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	5 cut(s)	463, 763, 814, 1117, 1195
BmcAI	AGTACT	3 cut(s)	143, 524, 772
Bme1390I	CCNGG	2 cut(s)	286, 547
BmgT120I	GGNCC	2 cut(s)	113, 418
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	286, 547
BmrI	ACTGGG	1 cut(s)	1237
BmuI	ACTGGG	1 cut(s)	1237
BpmI	CTGGAG	1 cut(s)	511
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	454, 546, 1081
BsaWI	WCCGGW	2 cut(s)	682, 1108
Bse1I	ACTGG	2 cut(s)	888, 1232
Bse3DI	GCAATG	3 cut(s)	925, 951, 1074
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	454, 546, 1081
BseGI	GGATG	1 cut(s)	264
BseMI	GCAATG	3 cut(s)	925, 951, 1074
BseMII	CTCAG	3 cut(s)	317, 867, 1016
BseNI	ACTGG	2 cut(s)	888, 1232
BseRI	GAGGAG	1 cut(s)	948
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	4 cut(s)	473, 824, 1102, 1205
BseYI	CCCAGC	1 cut(s)	797
BshFI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1155
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	3 cut(s)	304, 541, 651
BsiSI	CCGG	4 cut(s)	237, 285, 683, 1109
BsmAI	GTCTC	4 cut(s)	238, 371, 381, 856
BsmBI	CGTCTC	2 cut(s)	238, 856
BsnI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1155
Bsp1286I	GDGCHC	3 cut(s)	304, 541, 651
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	5 cut(s)	153, 162, 387, 893, 1046
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	2 cut(s)	446, 762
BspANI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1155
BspCNI	CTCAG	3 cut(s)	316, 866, 1017
BspEI	TCCGGA	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	2 cut(s)	395, 1054
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	3 cut(s)	925, 951, 1074
BsrI	ACTGG	2 cut(s)	888, 1232
BssECI	CCNNGG	3 cut(s)	454, 546, 1081
BssMI	GATC	5 cut(s)	153, 162, 387, 893, 1046
BssNAI	GTATAC	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	4 cut(s)	141, 735, 850, 880
Bst6I	CTCTTC	3 cut(s)	86, 1010, 1144
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	291, 1191
BstDEI	CTNAG	3 cut(s)	303, 853, 1025
BstF5I	GGATG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	271, 533
BstKTI	GATC	5 cut(s)	156, 165, 390, 896, 1049
BstMAI	GTCTC	4 cut(s)	238, 371, 381, 856
BstMBI	GATC	5 cut(s)	153, 162, 387, 893, 1046
BstMWI	GCNNNNNNNGC	6 cut(s)	299, 467, 758, 821, 830, 1247
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	284, 545
BstSFI	CTRYAG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	4 cut(s)	473, 824, 1102, 1205
BstX2I	RGATCY	2 cut(s)	387, 1046
BstYI	RGATCY	2 cut(s)	387, 1046
BstZ17I	GTATAC	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1155
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	2 cut(s)	204, 336
BtsIMutI	CAGTG	3 cut(s)	204, 336, 731
Cac8I	GCNNGC	2 cut(s)	291, 1191
CaiI	CAGNNNCTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	2 cut(s)	271, 533
Cfr13I	GGNCC	2 cut(s)	113, 418
Csp6I	GTAC	5 cut(s)	142, 509, 523, 771, 1221
CviAII	CATG	3 cut(s)	166, 394, 440
CviQI	GTAC	5 cut(s)	142, 509, 523, 771, 1221
DdeI	CTNAG	3 cut(s)	303, 853, 1025
DpnI	GATC	5 cut(s)	155, 164, 389, 895, 1048
DpnII	GATC	5 cut(s)	153, 162, 387, 893, 1046
DraIII	CACNNNGTG	1 cut(s)	758
EaeI	YGGCCR	2 cut(s)	123, 468
Eam1104I	CTCTTC	3 cut(s)	86, 1010, 1144
EarI	CTCTTC	3 cut(s)	86, 1010, 1144
Ecl136II	GAGCTC	2 cut(s)	302, 649
Eco130I	CCWWGG	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	1155
Eco24I	GRGCYC	2 cut(s)	304, 651
Eco53kI	GAGCTC	2 cut(s)	302, 649
Eco57I	CTGAAG	3 cut(s)	226, 681, 1126
EcoICRI	GAGCTC	2 cut(s)	302, 649
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	304, 651
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	2 cut(s)	238, 856
FaeI	CATG	3 cut(s)	169, 397, 443
FalI	AAGNNNNNCTT	2 cut(s)	1182, 1214
FatI	CATG	3 cut(s)	165, 393, 439
FauI	CCCGC	1 cut(s)	439
FauNDI	CATATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	5 cut(s)	462, 762, 813, 1116, 1194
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	2 cut(s)	304, 651
Fsp4HI	GCNGC	5 cut(s)	462, 762, 813, 1116, 1194
FspBI	CTAG	5 cut(s)	320, 359, 774, 1041, 1172
GlaI	GCGC	2 cut(s)	270, 532
GluI	GCNGC	5 cut(s)	462, 762, 813, 1116, 1194
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	511
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1155
HapII	CCGG	4 cut(s)	237, 285, 683, 1109
HhaI	GCGC	2 cut(s)	271, 533
Hin1II	CATG	3 cut(s)	169, 397, 443
Hin6I	GCGC	2 cut(s)	269, 531
HinP1I	GCGC	2 cut(s)	269, 531
HincII	GTYRAC	2 cut(s)	720, 1078
HindII	GTYRAC	2 cut(s)	720, 1078
HinfI	GANTC	4 cut(s)	130, 802, 857, 1105
HpaII	CCGG	4 cut(s)	237, 285, 683, 1109
Hpy166II	GTNNAC	4 cut(s)	539, 720, 738, 1078
Hpy188I	TCNGA	4 cut(s)	856, 1026, 1085, 1145
Hpy188III	TCNNGA	4 cut(s)	166, 256, 683, 746
Hpy8I	GTNNAC	4 cut(s)	539, 720, 738, 1078
HpyAV	CCTTC	6 cut(s)	28, 44, 232, 919, 1150, 1240
HpyCH4III	ACNGT	4 cut(s)	141, 735, 850, 880
HpyCH4IV	ACGT	2 cut(s)	595, 909
HpyCH4V	TGCA	3 cut(s)	151, 539, 1189
HpyF10VI	GCNNNNNNNGC	6 cut(s)	299, 467, 758, 821, 830, 1247
HpyF3I	CTNAG	3 cut(s)	303, 853, 1025
HpySE526I	ACGT	2 cut(s)	595, 909
Hsp92II	CATG	3 cut(s)	169, 397, 443
HspAI	GCGC	2 cut(s)	269, 531
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	153, 162, 387, 893, 1046
LmnI	GCTCC	7 cut(s)	299, 458, 654, 685, 794, 961, 1085
Lsp1109I	GCAGC	4 cut(s)	473, 824, 1102, 1205
MaeI	CTAG	5 cut(s)	320, 359, 774, 1041, 1172
MaeII	ACGT	2 cut(s)	595, 909
MaeIII	GTNAC	3 cut(s)	101, 135, 943
MalI	GATC	5 cut(s)	155, 164, 389, 895, 1048
MboI	GATC	5 cut(s)	153, 162, 387, 893, 1046
MboII	GAAGA	7 cut(s)	59, 103, 337, 412, 997, 1161, 1244
MflI	RGATCY	2 cut(s)	387, 1046
MhlI	GDGCHC	3 cut(s)	304, 541, 651
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	4 cut(s)	432, 555, 741, 1011
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	470
MroI	TCCGGA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	2 cut(s)	20, 1010
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	470
MspI	CCGG	4 cut(s)	237, 285, 683, 1109
MspR9I	CCNGG	2 cut(s)	286, 547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	6 cut(s)	299, 467, 758, 821, 830, 1247
NciI	CCSGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	5 cut(s)	153, 162, 387, 893, 1046
NlaIII	CATG	3 cut(s)	169, 397, 443
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	135, 943
PagI	TCATGA	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	1155
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	130, 802, 1105
PkrI	GCNGC	5 cut(s)	463, 763, 814, 1117, 1195
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
PsiI	TTATAA	1 cut(s)	869
Psp124BI	GAGCTC	2 cut(s)	304, 651
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	2 cut(s)	113, 418
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	387, 1046
RsaI	GTAC	5 cut(s)	143, 510, 524, 772, 1222
RsaNI	GTAC	5 cut(s)	142, 509, 523, 771, 1221
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	2 cut(s)	304, 651
SaqAI	TTAA	2 cut(s)	20, 1010
SatI	GCNGC	5 cut(s)	462, 762, 813, 1116, 1194
Sau3AI	GATC	5 cut(s)	153, 162, 387, 893, 1046
Sau96I	GGNCC	2 cut(s)	113, 418
ScaI	AGTACT	3 cut(s)	143, 524, 772
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	286, 547
SduI	GDGCHC	3 cut(s)	304, 541, 651
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	1171
Sse9I	AATT	4 cut(s)	432, 555, 741, 1011
SseBI	AGGCCT	1 cut(s)	1155
SsiI	CCGC	2 cut(s)	446, 762
SspMI	CTAG	5 cut(s)	320, 359, 774, 1041, 1172
SstI	GAGCTC	2 cut(s)	304, 651
StuI	AGGCCT	1 cut(s)	1155
StyD4I	CCNGG	2 cut(s)	284, 545
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	4 cut(s)	141, 735, 850, 880
TaiI	ACGT	2 cut(s)	598, 912
TaqI	TCGA	5 cut(s)	161, 273, 313, 817, 892
TasI	AATT	4 cut(s)	432, 555, 741, 1011
TatI	WGTACW	3 cut(s)	141, 522, 770
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	130, 802, 1105
Tru1I	TTAA	2 cut(s)	20, 1010
Tru9I	TTAA	2 cut(s)	20, 1010
TscAI	CASTG	3 cut(s)	211, 343, 738
TseFI	GTSAC	2 cut(s)	135, 943
TseI	GCWGC	4 cut(s)	461, 812, 1115, 1193
Tsp45I	GTSAC	2 cut(s)	135, 943
TspDTI	ATGAA	3 cut(s)	317, 456, 801
TspRI	CASTG	3 cut(s)	211, 343, 738
VneI	GTGCAC	1 cut(s)	537
XapI	RAATTY	1 cut(s)	555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	5 cut(s)	320, 359, 774, 1041, 1172
ZrmI	AGTACT	3 cut(s)	143, 524, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.