FvH4_4g26370

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27789009 .. 27792092
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26370.t2

Sequence Viewer

Length: 1449 bp
ATGGAGAAAGGGTTGTTGGTAAAGGAAACAGAGGAGGAGAACAGAGAAGAAGGATGTGTTGGGTTTGTTCGAGAAGTGAAGAGGTTGGGTTACATAGCAGGTCCTATGGTGGCTGTGAATTTGTCACAGTACTTTCTGCAAATCGTTTCGATCATGATGGTTGGTCATTTGGGTCAGCTCTCTCTTTCCAGTACTGCTATTGCCATCTCCTTCTGTGCAGTCTCCGGCTTCAGTCTTATTTTTGGAATGGCCTGTGCACTCGAAACTCTCTCTGGGCAAGCATACGGAGCTCAGCAGTATCGACAGCTAGGACTACATATAAGCACTGCTATCTTTTCTCTAATGCTAGTTTGTCTCCCTCTATCTCTTGTGTGGATTTATATGGAGAAGATACTAGTATTGTTGGGCCAAGACCCTCTAATTTCGCATGAAGCGGGCAGGTTTGCAAGGATGCTCTTACCTGCACTGTTTGCTTATGCAGCTCTTCAGCCACTTTGTAAATATCTTCAGACACAAAGCTTAATCGTTCCCTTGCTTTTAAGCTCTTGCGCCTGCGTGTGTTTCCATATACTTGTCTGCTGGCTTTTGGTGTTCAAGTCTGGCTTAGGAAACCTTGGAGCAGCTTTAGCCATTGGTATGTCTTATTGGTTGAATGTGGTTCTACTAGTACTATATGTGAAGTACTCCAGCACCTGTGCACATACCAGGGTTCAAATTTCTTTTGAAGTATTTCAAGGCATTGGAGAGTTCTTACGTTTTGCTATTCCGTCTGCTATAATGATTTGCCTTGAATGGTGGTCTTTTGAGCTCCTTACCTTGCTGGCTGGTTTTCTACCAAATCCGCGGCTTGAAACTTCAGTATTATCAGTTTGTTTGTCAACTATCGCATCACTGTTTACAATTCCAGAAGCGCTAGGTGCCGCTGTAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGGAACCCACAAGCAGCTCGTTTAGCTGTTATTGCTTCTATGTTTCTTACCGTCTCAGGGTCAGTCATTATAAGCTCAACCGTCTTTGCCAGTCGATCTGTTTTTGGCTACATTTTCAGCAATGAGAAGGAAGTTGTGGATTATGTCACTGCCATTGCTCCTCTGCTTTGTCTATCAGTTATAACAGACAGCTTACACGGGAATCTTTCTGGAATTGCTAGGGGATCTGGCTGGCAGGACTTGGGAGTGTATGTCAACCTCGGAGCTTACTATCTCATTGGGATTCCGGTGGCTGCCACATTGGGTTTCTGGTTCGACTTCAGAGGAAGAGGCCTTTGGATTGGAATACTAGTTGGTTCTTTTCTGCAAGTGGTTCTTTATTCTATCATAACAAGTTGTACAAACTGGGAAGAAAAGGCAAAGAAGGCGAGGGAGAGAGTATTCGAGGGAAGAGCAGCTTTAGTAAGGTTGCATTGTCTTTTCAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

52.51

Weight (kDa)

7.46

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 2 - 160 2.5e-28 MatE
MatE PF01554 279 - 343 1.2e-06 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1028, 1139
Acc36I ACCTGC 3 cut(s) 89, 429, 469
AccB1I GGYRCC 1 cut(s) 917
AccII CGCG 1 cut(s) 844
AciI CCGC 4 cut(s) 434, 842, 844, 921
AclWI GGATC 1 cut(s) 1189
AcsI RAATTY 2 cut(s) 118, 714
AcuI CTGAAG 5 cut(s) 214, 470, 491, 840, 1261
AfaI GTAC 7 cut(s) 131, 193, 669, 683, 931, 1357, 1444
AfeI AGCGCT 1 cut(s) 912
AfiI CCNNNNNNNGG 1 cut(s) 1014
AgsI TTSAA 8 cut(s) 595, 652, 713, 725, 734, 791, 851, 942
AhlI ACTAGT 3 cut(s) 394, 664, 1306
AjnI CCWGG 1 cut(s) 704
AjuI GAANNNNNNNTTGG 5 cut(s) 31, 42, 74, 1276, 1308
Alw21I GWGCWC 4 cut(s) 259, 292, 700, 810
Alw26I GTCTC 3 cut(s) 226, 359, 1015
Alw44I GTGCAC 2 cut(s) 255, 696
AlwI GGATC 1 cut(s) 1189
AlwNI CAGNNNCTG 1 cut(s) 693
Aor51HI AGCGCT 1 cut(s) 912
AoxI GGCC 3 cut(s) 249, 406, 1288
ApaLI GTGCAC 2 cut(s) 255, 696
ApeKI GCWGC 5 cut(s) 479, 620, 971, 1250, 1412
ApoI RAATTY 2 cut(s) 118, 714
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 2 cut(s) 551, 913
AspS9I GGNCC 2 cut(s) 101, 406
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 2 cut(s) 259, 700
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 2 cut(s) 292, 810
Bbv12I GWGCWC 4 cut(s) 259, 292, 700, 810
BbvI GCAGC 5 cut(s) 491, 632, 983, 1237, 1424
BccI CCATC 2 cut(s) 151, 212
BciT130I CCWGG 1 cut(s) 706
BcoDI GTCTC 3 cut(s) 226, 359, 1015
BcuI ACTAGT 3 cut(s) 394, 664, 1306
BfaI CTAG 9 cut(s) 308, 347, 395, 665, 914, 933, 950, 1176, 1307
BfoI RGCGCY 1 cut(s) 914
BfuAI ACCTGC 3 cut(s) 89, 429, 469
BisI GCNGC 7 cut(s) 480, 621, 845, 921, 972, 1251, 1413
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 7 cut(s) 481, 622, 846, 922, 973, 1252, 1414
BmcAI AGTACT 5 cut(s) 131, 193, 669, 683, 931
Bme1390I CCNGG 1 cut(s) 706
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 101, 406
BmiI GGNNCC 2 cut(s) 919, 962
BmrFI CCNGG 1 cut(s) 706
BmrI ACTGGG 1 cut(s) 1372
BmsI GCATC 2 cut(s) 441, 896
BmuI ACTGGG 1 cut(s) 1372
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 1 cut(s) 604
Bpu1102I GCTNAGC 1 cut(s) 291
BsaJI CCNNGG 4 cut(s) 613, 705, 842, 1216
BsaWI WCCGGW 1 cut(s) 1243
BsaXI ACNNNNNCTCC 3 cut(s) 26, 1194, 1224
Bsc4I CCNNNNNNNGG 1 cut(s) 1014
Bse1I ACTGG 3 cut(s) 189, 1047, 1367
Bse3DI GCAATG 2 cut(s) 1084, 1110
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 4 cut(s) 613, 705, 842, 1216
BseGI GGATG 2 cut(s) 59, 456
BseLI CCNNNNNNNGG 1 cut(s) 1014
BseMI GCAATG 2 cut(s) 1084, 1110
BseMII CTCAG 2 cut(s) 305, 1026
BseNI ACTGG 3 cut(s) 189, 1047, 1367
BseRI GAGGAG 3 cut(s) 47, 50, 1107
BseSI GKGCMC 2 cut(s) 259, 700
BseXI GCAGC 5 cut(s) 491, 632, 983, 1237, 1424
BseYI CCCAGC 1 cut(s) 956
BsgI GTGCAG 2 cut(s) 237, 447
Bsh1236I CGCG 1 cut(s) 844
BshFI GGCC 3 cut(s) 251, 408, 1290
BshNI GGYRCC 1 cut(s) 917
BsiHKAI GWGCWC 4 cut(s) 259, 292, 700, 810
BsiSI CCGG 2 cut(s) 225, 1244
BslI CCNNNNNNNGG 1 cut(s) 1014
BsmAI GTCTC 3 cut(s) 226, 359, 1015
BsmBI CGTCTC 1 cut(s) 1015
BsnI GGCC 3 cut(s) 251, 408, 1290
Bsp1286I GDGCHC 4 cut(s) 259, 292, 700, 810
Bsp1407I TGTACA 1 cut(s) 1355
Bsp143I GATC 3 cut(s) 150, 1052, 1181
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 4 cut(s) 434, 842, 844, 921
BspANI GGCC 3 cut(s) 251, 408, 1290
BspCNI CTCAG 2 cut(s) 304, 1025
BspFNI CGCG 1 cut(s) 844
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 919, 962
BspMI ACCTGC 3 cut(s) 89, 429, 469
BspPI GGATC 1 cut(s) 1189
BspQI GCTCTTC 2 cut(s) 489, 1402
BspT107I GGYRCC 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 1084, 1110
BsrGI TGTACA 1 cut(s) 1355
BsrI ACTGG 3 cut(s) 189, 1047, 1367
BssECI CCNNGG 4 cut(s) 613, 705, 842, 1216
BssMI GATC 3 cut(s) 150, 1052, 1181
BssT1I CCWWGG 1 cut(s) 613
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 5 cut(s) 129, 468, 894, 1009, 1039
Bst6I CTCTTC 4 cut(s) 74, 489, 1279, 1402
BstAPI GCANNNNNTGC 1 cut(s) 470
BstAUI TGTACA 1 cut(s) 1355
BstC8I GCNNGC 6 cut(s) 279, 436, 553, 581, 822, 1190
BstDEI CTNAG 3 cut(s) 291, 604, 1012
BstDSI CCRYGG 1 cut(s) 842
BstF5I GGATG 2 cut(s) 59, 456
BstFNI CGCG 1 cut(s) 844
BstH2I RGCGCY 1 cut(s) 914
BstHHI GCGC 2 cut(s) 551, 913
BstKTI GATC 3 cut(s) 153, 1055, 1184
BstMAI GTCTC 3 cut(s) 226, 359, 1015
BstMBI GATC 3 cut(s) 150, 1052, 1181
BstMWI GCNNNNNNNGC 8 cut(s) 287, 470, 479, 626, 917, 980, 989, 1382
BstNI CCWGG 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 704
BstSLI GKGCMC 2 cut(s) 259, 700
BstUI CGCG 1 cut(s) 844
BstV1I GCAGC 5 cut(s) 491, 632, 983, 1237, 1424
BstX2I RGATCY 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 1181
BsuRI GGCC 3 cut(s) 251, 408, 1290
BtgI CCRYGG 1 cut(s) 842
BtsCI GGATG 2 cut(s) 59, 456
BtsI GCAGTG 2 cut(s) 324, 1104
BtsIMutI CAGTG 4 cut(s) 324, 464, 890, 1104
BveI ACCTGC 3 cut(s) 89, 429, 469
Cac8I GCNNGC 6 cut(s) 279, 436, 553, 581, 822, 1190
CaiI CAGNNNCTG 1 cut(s) 693
CciI TCATGA 1 cut(s) 153
CfoI GCGC 2 cut(s) 551, 913
Cfr13I GGNCC 2 cut(s) 101, 406
Cfr42I CCGCGG 1 cut(s) 845
Csp6I GTAC 7 cut(s) 130, 192, 668, 682, 930, 1356, 1443
CviAII CATG 2 cut(s) 154, 428
CviQI GTAC 7 cut(s) 130, 192, 668, 682, 930, 1356, 1443
DdeI CTNAG 3 cut(s) 291, 604, 1012
DpnI GATC 3 cut(s) 152, 1054, 1183
DpnII GATC 3 cut(s) 150, 1052, 1181
Eam1104I CTCTTC 4 cut(s) 74, 489, 1279, 1402
EarI CTCTTC 4 cut(s) 74, 489, 1279, 1402
Ecl136II GAGCTC 2 cut(s) 290, 808
Eco130I CCWWGG 1 cut(s) 613
Eco147I AGGCCT 1 cut(s) 1290
Eco24I GRGCYC 2 cut(s) 292, 810
Eco47I GGWCC 1 cut(s) 101
Eco47III AGCGCT 1 cut(s) 912
Eco53kI GAGCTC 2 cut(s) 290, 808
Eco57I CTGAAG 5 cut(s) 214, 470, 491, 840, 1261
EcoICRI GAGCTC 2 cut(s) 290, 808
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 292, 810
ErhI CCWWGG 1 cut(s) 613
Esp3I CGTCTC 1 cut(s) 1015
FaeI CATG 2 cut(s) 157, 431
FalI AAGNNNNNCTT 6 cut(s) 587, 619, 1317, 1349, 1399, 1431
FatI CATG 2 cut(s) 153, 427
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 7 cut(s) 480, 621, 845, 921, 972, 1251, 1413
FokI GGATG 2 cut(s) 66, 463
FriOI GRGCYC 2 cut(s) 292, 810
Fsp4HI GCNGC 7 cut(s) 480, 621, 845, 921, 972, 1251, 1413
FspBI CTAG 9 cut(s) 308, 347, 395, 665, 914, 933, 950, 1176, 1307
GlaI GCGC 2 cut(s) 550, 912
GluI GCNGC 7 cut(s) 480, 621, 845, 921, 972, 1251, 1413
GsaI CCCAGC 1 cut(s) 960
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 914
HaeIII GGCC 3 cut(s) 251, 408, 1290
HapII CCGG 2 cut(s) 225, 1244
HhaI GCGC 2 cut(s) 551, 913
Hin1II CATG 2 cut(s) 157, 431
Hin6I GCGC 2 cut(s) 549, 911
HinP1I GCGC 2 cut(s) 549, 911
HincII GTYRAC 2 cut(s) 879, 1213
HindII GTYRAC 2 cut(s) 879, 1213
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 2 cut(s) 1159, 1240
HpaII CCGG 2 cut(s) 225, 1244
Hpy166II GTNNAC 5 cut(s) 257, 698, 879, 897, 1213
Hpy188I TCNGA 3 cut(s) 510, 1220, 1280
Hpy188III TCNNGA 4 cut(s) 71, 154, 905, 1167
Hpy8I GTNNAC 5 cut(s) 257, 698, 879, 897, 1213
HpyAV CCTTC 4 cut(s) 44, 220, 1078, 1375
HpyCH4III ACNGT 5 cut(s) 129, 468, 894, 1009, 1039
HpyCH4IV ACGT 1 cut(s) 754
HpyCH4V TGCA 9 cut(s) 139, 218, 257, 446, 464, 479, 698, 1324, 1429
HpyF10VI GCNNNNNNNGC 8 cut(s) 287, 470, 479, 626, 917, 980, 989, 1382
HpyF3I CTNAG 3 cut(s) 291, 604, 1012
HpySE526I ACGT 1 cut(s) 754
Hsp92II CATG 2 cut(s) 157, 431
HspAI GCGC 2 cut(s) 549, 911
KspI CCGCGG 1 cut(s) 845
Kzo9I GATC 3 cut(s) 150, 1052, 1181
LguI GCTCTTC 2 cut(s) 489, 1402
LmnI GCTCC 6 cut(s) 287, 617, 813, 953, 1120, 1220
Lsp1109I GCAGC 5 cut(s) 491, 632, 983, 1237, 1424
LweI GCATC 2 cut(s) 441, 896
MaeI CTAG 9 cut(s) 308, 347, 395, 665, 914, 933, 950, 1176, 1307
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 3 cut(s) 89, 123, 1102
MalI GATC 3 cut(s) 152, 1054, 1183
MboI GATC 3 cut(s) 150, 1052, 1181
MboII GAAGA 8 cut(s) 59, 91, 400, 476, 497, 1296, 1379, 1419
MflI RGATCY 1 cut(s) 1181
MhlI GDGCHC 4 cut(s) 259, 292, 700, 810
MluCI AATT 5 cut(s) 118, 420, 714, 900, 1170
MroXI GAANNNNTTC 1 cut(s) 729
MseI TTAA 2 cut(s) 521, 539
MslI CAYNNNNRTG 1 cut(s) 635
MspA1I CMGCKG 2 cut(s) 844, 923
MspI CCGG 2 cut(s) 225, 1244
MspR9I CCNGG 1 cut(s) 706
MvaI CCWGG 1 cut(s) 706
MvnI CGCG 1 cut(s) 844
MwoI GCNNNNNNNGC 8 cut(s) 287, 470, 479, 626, 917, 980, 989, 1382
NdeII GATC 3 cut(s) 150, 1052, 1181
NlaIII CATG 2 cut(s) 157, 431
NlaIV GGNNCC 2 cut(s) 919, 962
NmuCI GTSAC 2 cut(s) 123, 1102
PagI TCATGA 1 cut(s) 153
PceI AGGCCT 1 cut(s) 1290
PciSI GCTCTTC 2 cut(s) 489, 1402
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 2 cut(s) 1159, 1240
PkrI GCNGC 7 cut(s) 481, 622, 846, 922, 973, 1252, 1414
PpuMI RGGWCCY 1 cut(s) 101
PsiI TTATAA 2 cut(s) 1028, 1139
Psp124BI GAGCTC 2 cut(s) 292, 810
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 956
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 2 cut(s) 919, 962
PspPI GGNCC 2 cut(s) 101, 406
PspPPI RGGWCCY 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 693
PsuI RGATCY 1 cut(s) 1181
RsaI GTAC 7 cut(s) 131, 193, 669, 683, 931, 1357, 1444
RsaNI GTAC 7 cut(s) 130, 192, 668, 682, 930, 1356, 1443
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 2 cut(s) 292, 810
SacII CCGCGG 1 cut(s) 845
SapI GCTCTTC 2 cut(s) 489, 1402
SaqAI TTAA 2 cut(s) 521, 539
SatI GCNGC 7 cut(s) 480, 621, 845, 921, 972, 1251, 1413
Sau3AI GATC 3 cut(s) 150, 1052, 1181
Sau96I GGNCC 2 cut(s) 101, 406
ScaI AGTACT 5 cut(s) 131, 193, 669, 683, 931
ScrFI CCNGG 1 cut(s) 706
SduI GDGCHC 4 cut(s) 259, 292, 700, 810
SfaNI GCATC 2 cut(s) 441, 896
Sfr303I CCGCGG 1 cut(s) 845
SgrBI CCGCGG 1 cut(s) 845
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 635
SpeI ACTAGT 3 cut(s) 394, 664, 1306
Sse9I AATT 5 cut(s) 118, 420, 714, 900, 1170
SseBI AGGCCT 1 cut(s) 1290
SsiI CCGC 4 cut(s) 434, 842, 844, 921
SspMI CTAG 9 cut(s) 308, 347, 395, 665, 914, 933, 950, 1176, 1307
SstI GAGCTC 2 cut(s) 292, 810
StuI AGGCCT 1 cut(s) 1290
StyD4I CCNGG 1 cut(s) 704
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 5 cut(s) 129, 468, 894, 1009, 1039
TaiI ACGT 1 cut(s) 757
TaqI TCGA 7 cut(s) 70, 149, 261, 301, 1051, 1272, 1401
TasI AATT 5 cut(s) 118, 420, 714, 900, 1170
TatI WGTACW 6 cut(s) 129, 191, 667, 681, 929, 1355
TauI GCSGC 2 cut(s) 847, 923
TfiI GAWTC 2 cut(s) 1159, 1240
Tru1I TTAA 2 cut(s) 521, 539
Tru9I TTAA 2 cut(s) 521, 539
TscAI CASTG 4 cut(s) 331, 471, 897, 1111
TseFI GTSAC 2 cut(s) 123, 1102
TseI GCWGC 5 cut(s) 479, 620, 971, 1250, 1412
Tsp45I GTSAC 2 cut(s) 123, 1102
TspDTI ATGAA 2 cut(s) 444, 960
TspGWI ACGGA 2 cut(s) 300, 756
TspRI CASTG 4 cut(s) 331, 471, 897, 1111
VneI GTGCAC 2 cut(s) 255, 696
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 2 cut(s) 118, 714
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 9 cut(s) 308, 347, 395, 665, 914, 933, 950, 1176, 1307
ZrmI AGTACT 5 cut(s) 131, 193, 669, 683, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.