Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

55127570 .. 55129767

Gene Structure 2198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTAGAGCCGAGAAAGAGCAACTGAACCGAACTCTGAACCAGCACCTCAACACTGTCCATGAAATCTTAGAGGTGTTGGATCAAAACCCACCTTCTACACTTGAGAAGGTGAGCTGGGAAGAGGTCGTCCAGATGGGTAACCAAGTCTCCAAGCAAGCCACCATTGTTGGAATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGCTTGAAGAAAACATGACTGCCTACTTTAATATGCTACAAGGTTTTCTTCTTCTTTCACATGGGAGTATGGTTGGTGCAGGGCCTACTCTTTCTTCTTGTGTCCACGCATCTGTAAAGCAAGTTGTTGACTCCAGTTTTAAGTTGATGAAGGAATCTATCTCGTTGTACGGAGCAGTGAATAAAGACTGGAAACTGTCGATTCCACAGTTGGCTGGTGCGGTATGGGAAGCCTGTTCTGCTCTTAAGAAGACCCCTGCCACAAATGTCACAGCAATTGGGCGAGCAATGACGCAGGTTGCAGTCTCCATGAAAGATGTACTTCGTGAGATGAAGGAGCTTAAGCCGGCTAGTGACCCAACAGAAGATGAGACTGAAGCAGAAATTGAGCCCCATGATGATGAAACTTTGAGTGATAGTGATCTGGGAAATGACTTGTCACCTGAAGAGATGAAAGTTGCTGAGCTAGCAATTGCAGCCGTGTCTGAGACTCTTGTAGTGATAAAGGAACTAATTCGTACCATCACAAGTTTGCTTAAACGGGAAAGTCCAAATGACAGTAGTCTTGTGCATTCTCTGGAGAAACTGTTGAAGATGTGTAAAGGAATTGGAGAACAGATAGATGAGCTTGGAGCTTGTCTCTACCCCCCGCAAGAGGTTCCCACTATCAAGGCAGTATTGGAGAAAATGTCGAGCCTTACTGATGACATGAAAGCTGAATTACAGAGTCTTCAAGAAAATTTGGAAGCTTTTTGTCAGGCATGCGATTGTTTGAAGGGTTCATTGAGACAGCTTGAATCTGCACTAGACCATCCAACAGTTATTGGTTTAGAAACCAGAGTGCAGAAGATTGATTTGAACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

357

Amino Acids

39.23

Weight (kDa)

4.79

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	42 - 185	2e-47	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	206 - 306	2.9e-25	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	2 cut(s)	428, 857
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	2 cut(s)	603, 672
AfaI	GTAC	3 cut(s)	377, 528, 727
AfiI	CCNNNNNNNGG	1 cut(s)	862
AflII	CTTAAG	2 cut(s)	452, 548
AgsI	TTSAA	6 cut(s)	215, 799, 941, 982, 1004, 1066
AluBI	AGCT	9 cut(s)	117, 203, 547, 673, 835, 842, 923, 956, 1000
AluI	AGCT	9 cut(s)	117, 203, 547, 673, 835, 842, 923, 956, 1000
Alw26I	GTCTC	6 cut(s)	154, 517, 572, 689, 851, 988
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	946
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	124, 639
AsuNHI	GCTAGC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	2 cut(s)	464, 929
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	3 cut(s)	130, 737, 1026
BceAI	ACGGC	1 cut(s)	671
BcoDI	GTCTC	6 cut(s)	154, 517, 572, 689, 851, 988
BfaI	CTAG	4 cut(s)	204, 558, 674, 1013
BfrI	CTTAAG	2 cut(s)	452, 548
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	1 cut(s)	684
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	867
BmsI	GCATC	1 cut(s)	326
BmtI	GCTAGC	1 cut(s)	677
BoxI	GACNNNNGTC	1 cut(s)	768
BpiI	GAAGAC	2 cut(s)	464, 929
BplI	GAGNNNNNCTC	2 cut(s)	831, 863
BpmI	CTGGAG	2 cut(s)	325, 806
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	627
BsaXI	ACNNNNNCTCC	8 cut(s)	134, 164, 180, 210, 779, 809, 881, 911
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	342, 401
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	627
BseGI	GGATG	1 cut(s)	1018
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	660, 684
BseNI	ACTGG	2 cut(s)	342, 401
BseXI	GCAGC	1 cut(s)	695
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	3 cut(s)	306, 993, 1070
BshFI	GGCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmAI	GTCTC	6 cut(s)	154, 517, 572, 689, 851, 988
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	82, 628
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	2 cut(s)	428, 857
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	661, 685
BspLI	GGNNCC	1 cut(s)	867
BspMI	ACCTGC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	90
BspTI	CTTAAG	2 cut(s)	452, 548
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	342, 401
BssAI	RCCGGY	1 cut(s)	553
BssMI	GATC	2 cut(s)	82, 628
Bst4CI	ACNGT	7 cut(s)	58, 405, 417, 767, 795, 1027, 1070
Bst6I	CTCTTC	2 cut(s)	117, 648
BstAFI	CTTAAG	2 cut(s)	452, 548
BstC8I	GCNNGC	5 cut(s)	159, 492, 555, 675, 970
BstDEI	CTNAG	3 cut(s)	70, 669, 693
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	1018
BstKTI	GATC	2 cut(s)	85, 631
BstMAI	GTCTC	6 cut(s)	154, 517, 572, 689, 851, 988
BstMBI	GATC	2 cut(s)	82, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
BstNSI	RCATGY	1 cut(s)	972
BstPAI	GACNNNNGTC	1 cut(s)	768
BstPI	GGTNACC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	695
BstV2I	GAAGAC	2 cut(s)	464, 929
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	1018
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	54, 390
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	5 cut(s)	159, 492, 555, 675, 970
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	376, 527, 726
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	7 cut(s)	62, 223, 269, 517, 602, 916, 969
CviQI	GTAC	3 cut(s)	376, 527, 726
DdeI	CTNAG	3 cut(s)	70, 669, 693
DpnI	GATC	2 cut(s)	84, 630
DpnII	GATC	2 cut(s)	82, 628
Eam1104I	CTCTTC	2 cut(s)	117, 648
EarI	CTCTTC	2 cut(s)	117, 648
Eco24I	GRGCYC	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	603, 672
Eco91I	GGTNACC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 513, 545
FatI	CATG	7 cut(s)	61, 222, 268, 516, 601, 915, 968
FauI	CCCGC	1 cut(s)	864
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	1005
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	4 cut(s)	204, 558, 674, 1013
GluI	GCNGC	1 cut(s)	684
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	325, 806
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	508
Hin1II	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	6 cut(s)	338, 362, 409, 697, 934, 1004
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	124, 639
Hpy166II	GTNNAC	2 cut(s)	313, 337
Hpy188I	TCNGA	2 cut(s)	39, 694
Hpy188III	TCNNGA	4 cut(s)	133, 533, 785, 941
Hpy8I	GTNNAC	2 cut(s)	313, 337
HpyAV	CCTTC	5 cut(s)	103, 105, 352, 535, 976
HpyCH4III	ACNGT	7 cut(s)	58, 405, 417, 767, 795, 1027, 1070
HpyCH4V	TGCA	6 cut(s)	287, 509, 683, 778, 1010, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
HpyF3I	CTNAG	3 cut(s)	70, 669, 693
Hsp92II	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
Kzo9I	GATC	2 cut(s)	82, 628
LmnI	GCTCC	3 cut(s)	380, 544, 839
Lsp1109I	GCAGC	1 cut(s)	695
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	4 cut(s)	204, 558, 674, 1013
MaeIII	GTNAC	4 cut(s)	140, 475, 560, 645
MalI	GATC	2 cut(s)	84, 630
MboI	GATC	2 cut(s)	82, 628
MfeI	CAATTG	2 cut(s)	483, 678
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	7 cut(s)	483, 591, 678, 720, 813, 926, 946
MlyI	GAGTC	3 cut(s)	332, 691, 943
MmeI	TCCRAC	3 cut(s)	60, 151, 1046
MnlI	CCTC	4 cut(s)	59, 67, 118, 856
MroNI	GCCGGC	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	5 cut(s)	237, 348, 453, 549, 744
MslI	CAYNNNNRTG	1 cut(s)	606
MspCI	CTTAAG	2 cut(s)	452, 548
MspI	CCGG	1 cut(s)	554
MunI	CAATTG	2 cut(s)	483, 678
Mva1269I	GAATGC	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
NaeI	GCCGGC	1 cut(s)	555
NdeII	GATC	2 cut(s)	82, 628
NgoMIV	GCCGGC	1 cut(s)	553
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
NlaIV	GGNNCC	1 cut(s)	867
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	3 cut(s)	475, 560, 645
NspI	RCATGY	1 cut(s)	972
PaeI	GCATGC	1 cut(s)	972
PctI	GAATGC	1 cut(s)	778
PdiI	GCCGGC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	362, 409, 1004
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	3 cut(s)	332, 691, 942
PpsI	GAGTC	3 cut(s)	332, 691, 942
PshAI	GACNNNNGTC	1 cut(s)	768
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	290
RsaI	GTAC	3 cut(s)	377, 528, 727
RsaNI	GTAC	3 cut(s)	376, 527, 726
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	5 cut(s)	237, 348, 453, 549, 744
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	2 cut(s)	82, 628
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	3 cut(s)	332, 691, 943
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	3 cut(s)	104, 452, 548
SmoI	CTYRAG	3 cut(s)	104, 452, 548
SphI	GCATGC	1 cut(s)	972
Sse9I	AATT	7 cut(s)	483, 591, 678, 720, 813, 926, 946
SsiI	CCGC	2 cut(s)	428, 857
SspMI	CTAG	4 cut(s)	204, 558, 674, 1013
TaaI	ACNGT	7 cut(s)	58, 405, 417, 767, 795, 1027, 1070
TaqI	TCGA	2 cut(s)	407, 899
TasI	AATT	7 cut(s)	483, 591, 678, 720, 813, 926, 946
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	3 cut(s)	362, 409, 1004
Tru1I	TTAA	5 cut(s)	237, 348, 453, 549, 744
Tru9I	TTAA	5 cut(s)	237, 348, 453, 549, 744
TscAI	CASTG	2 cut(s)	61, 390
TseFI	GTSAC	3 cut(s)	475, 560, 645
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	3 cut(s)	475, 560, 645
TspDTI	ATGAA	8 cut(s)	78, 371, 533, 554, 624, 674, 932, 978
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	61, 390
Vha464I	CTTAAG	2 cut(s)	452, 548
XapI	RAATTY	1 cut(s)	946
XceI	RCATGY	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	4 cut(s)	204, 558, 674, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.