Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

60805414 .. 60812929

Gene Structure 7516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG351000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAAAAAGGGTTGTTGTTAAAGGAAACAGAGAAGGAGAACAGAGAAGAAGGTGGTTATCAACGATATGGTGGGTTTGTTGGAGAAGTGAAGAGGTTGGGTTACATAGCAGGGCCTATGGTGGCCGTGAATCTGTCACAGTACTTTCTGCAGATCATTTCGATCATGATGGTTGGTCATTTGGGTCAGCTCTCTCTTTCCAGCACTGCTATTGCCATCTCCTTCTGTGCCGTCTCCGGCTTCAGTCTTATTTTCGGGATGGCCTGTGCGCTCGAAACTCTCTCCGGGCAAGCATATGGAGCTCAGCAGTATCGACAGCTAGGACTTCATATAAGCACTGCTATCTTCTCTCTAATGCTAGTTTGTCTCCCTCTGTCTCTTGTGTGGATCTACATGGAGAAGATACTAATGTTGTTGGGCCAAGACCCTCTAATTTCGCATGAAGCGGGAAACCTTGGAGCAGCTTTGGCCATTGGTATGTCTTATTGGTTGAATGTGGTTCTGCTCGTACTATATGTGAAGTACTCCAGCGCCTGTGCACATACCAGGGTTCAAATTTCTTTTGAAGTATTTCAAGGCATTGGAGAGTTCTTACGTTTTGCTGTTCCATCTGCTGTAATGATTTGCCTTGAATGGTGGTCATTTGAGCTCCTTACCTTGATGGCTGGTTTTCTACCAAATCCGGAGCTTGAAACTTCAGTTTTGTCTGTTTGTTTGTCAACTCTCTCATCACTGTATACAATTCCAGAAGCACTTGGTGCCGCAGTAAGTACTAGAGTTTCAAATGAACTTGGAGCTGGGAATCCACAAGCAGCTCGATTAGCTGTTGTTGCTTCTATGTTCCTAACCGTCTCAGAGTCAGTCATTATAAGCTCAACCGTCTTTGCCAGTCGATCTGTTTTTGGCTACGTTTTCAGCAATGAGAAGGAAGTTGTGGATTATGTCACTTCCATTGCTCCTCTGGTTTGTCTATCAGTATTAGAAGCTACGGTTATAACAGACAGCTTACATGCTGTTCTTTCTGGTATTGCTAGGGGATCTGGTTGGCAGGACTTGGCAATGTATGTCAACCTCGGAGCTTACTATCTTGTTGGGATTCCGGTTGCTGCCACATTGGGTTTCTGGTTCGCCTTCAGAGGAAGAGGCCTTTGGATTGGAATACTAGTCGGTTCTTTTCTGCAAGCAGCCCTTTATTCTATCATAACAAGTTGTACGAACTGGGAAGAAAAGGCAAAGAAGGCGAGGGAGAGGATATTTGAGGAAACAGCTTTAGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

426

Amino Acids

46.28

Weight (kDa)

5.51

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	39 - 160	3.9e-21	MatE
MatE	PF01554	203 - 370	1.9e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	869, 995
AccB1I	GGYRCC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	737
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	2 cut(s)	446, 762
AclWI	GGATC	2 cut(s)	395, 1045
AcoI	YGGCCR	2 cut(s)	123, 468
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	3 cut(s)	226, 681, 1117
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	5 cut(s)	143, 510, 524, 772, 1213
AgsI	TTSAA	7 cut(s)	493, 554, 566, 575, 632, 692, 783
AhlI	ACTAGT	1 cut(s)	1162
AjnI	CCWGG	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	1132, 1164
Alw21I	GWGCWC	3 cut(s)	304, 541, 651
Alw26I	GTCTC	4 cut(s)	238, 371, 381, 856
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	2 cut(s)	395, 1045
AlwNI	CAGNNNCTG	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	6 cut(s)	113, 123, 261, 418, 468, 1144
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	4 cut(s)	461, 812, 1106, 1184
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	271, 533
AspS9I	GGNCC	2 cut(s)	113, 418
AsuC2I	CCSGG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	304, 651
Bbv12I	GWGCWC	3 cut(s)	304, 541, 651
BbvI	GCAGC	4 cut(s)	473, 824, 1093, 1196
BccI	CCATC	5 cut(s)	163, 224, 253, 616, 655
BceAI	ACGGC	2 cut(s)	110, 215
BciT130I	CCWGG	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	4 cut(s)	238, 371, 381, 856
BcuI	ACTAGT	1 cut(s)	1162
BfaI	CTAG	5 cut(s)	320, 359, 774, 1032, 1163
BfmI	CTRYAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	534
BisI	GCNGC	5 cut(s)	462, 762, 813, 1107, 1185
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	5 cut(s)	463, 763, 814, 1108, 1186
BmcAI	AGTACT	3 cut(s)	143, 524, 772
Bme1390I	CCNGG	2 cut(s)	286, 547
BmgT120I	GGNCC	2 cut(s)	113, 418
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	286, 547
BmrI	ACTGGG	1 cut(s)	1228
BmuI	ACTGGG	1 cut(s)	1228
BpmI	CTGGAG	1 cut(s)	511
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	454, 546, 1072
BsaWI	WCCGGW	2 cut(s)	682, 1099
Bse1I	ACTGG	2 cut(s)	888, 1223
Bse3DI	GCAATG	3 cut(s)	925, 951, 1065
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	454, 546, 1072
BseGI	GGATG	1 cut(s)	264
BseMI	GCAATG	3 cut(s)	925, 951, 1065
BseMII	CTCAG	2 cut(s)	317, 867
BseNI	ACTGG	2 cut(s)	888, 1223
BseRI	GAGGAG	1 cut(s)	948
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	4 cut(s)	473, 824, 1093, 1196
BseYI	CCCAGC	1 cut(s)	797
BshFI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1146
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	3 cut(s)	304, 541, 651
BsiSI	CCGG	4 cut(s)	237, 285, 683, 1100
BsmAI	GTCTC	4 cut(s)	238, 371, 381, 856
BsmBI	CGTCTC	2 cut(s)	238, 856
BsnI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1146
Bsp1286I	GDGCHC	3 cut(s)	304, 541, 651
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	5 cut(s)	153, 162, 387, 893, 1037
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	2 cut(s)	446, 762
BspANI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1146
BspCNI	CTCAG	2 cut(s)	316, 866
BspEI	TCCGGA	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	2 cut(s)	395, 1045
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	3 cut(s)	925, 951, 1065
BsrI	ACTGG	2 cut(s)	888, 1223
BssECI	CCNNGG	3 cut(s)	454, 546, 1072
BssMI	GATC	5 cut(s)	153, 162, 387, 893, 1037
BssNAI	GTATAC	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	5 cut(s)	141, 735, 850, 880, 991
Bst6I	CTCTTC	2 cut(s)	86, 1135
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	291, 1182
BstDEI	CTNAG	2 cut(s)	303, 853
BstF5I	GGATG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	271, 533
BstKTI	GATC	5 cut(s)	156, 165, 390, 896, 1040
BstMAI	GTCTC	4 cut(s)	238, 371, 381, 856
BstMBI	GATC	5 cut(s)	153, 162, 387, 893, 1037
BstMWI	GCNNNNNNNGC	6 cut(s)	299, 467, 758, 821, 830, 1238
BstNI	CCWGG	1 cut(s)	547
BstNSI	RCATGY	1 cut(s)	1013
BstSCI	CCNGG	2 cut(s)	284, 545
BstSFI	CTRYAG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	4 cut(s)	473, 824, 1093, 1196
BstX2I	RGATCY	2 cut(s)	387, 1037
BstYI	RGATCY	2 cut(s)	387, 1037
BstZ17I	GTATAC	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1146
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	2 cut(s)	204, 336
BtsIMutI	CAGTG	3 cut(s)	204, 336, 731
Cac8I	GCNNGC	2 cut(s)	291, 1182
CaiI	CAGNNNCTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	2 cut(s)	271, 533
Cfr13I	GGNCC	2 cut(s)	113, 418
Csp6I	GTAC	5 cut(s)	142, 509, 523, 771, 1212
CviAII	CATG	4 cut(s)	166, 394, 440, 1010
CviQI	GTAC	5 cut(s)	142, 509, 523, 771, 1212
DdeI	CTNAG	2 cut(s)	303, 853
DpnI	GATC	5 cut(s)	155, 164, 389, 895, 1039
DpnII	GATC	5 cut(s)	153, 162, 387, 893, 1037
DraIII	CACNNNGTG	1 cut(s)	758
EaeI	YGGCCR	2 cut(s)	123, 468
Eam1104I	CTCTTC	2 cut(s)	86, 1135
EarI	CTCTTC	2 cut(s)	86, 1135
Ecl136II	GAGCTC	2 cut(s)	302, 649
Eco130I	CCWWGG	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	1146
Eco24I	GRGCYC	2 cut(s)	304, 651
Eco53kI	GAGCTC	2 cut(s)	302, 649
Eco57I	CTGAAG	3 cut(s)	226, 681, 1117
EcoICRI	GAGCTC	2 cut(s)	302, 649
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	304, 651
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	2 cut(s)	238, 856
FaeI	CATG	4 cut(s)	169, 397, 443, 1013
FalI	AAGNNNNNCTT	2 cut(s)	1173, 1205
FatI	CATG	4 cut(s)	165, 393, 439, 1009
FauI	CCCGC	1 cut(s)	439
FauNDI	CATATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	5 cut(s)	462, 762, 813, 1107, 1185
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	2 cut(s)	304, 651
Fsp4HI	GCNGC	5 cut(s)	462, 762, 813, 1107, 1185
FspBI	CTAG	5 cut(s)	320, 359, 774, 1032, 1163
GlaI	GCGC	2 cut(s)	270, 532
GluI	GCNGC	5 cut(s)	462, 762, 813, 1107, 1185
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	511
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	115, 125, 263, 420, 470, 1146
HapII	CCGG	4 cut(s)	237, 285, 683, 1100
HhaI	GCGC	2 cut(s)	271, 533
Hin1II	CATG	4 cut(s)	169, 397, 443, 1013
Hin6I	GCGC	2 cut(s)	269, 531
HinP1I	GCGC	2 cut(s)	269, 531
HincII	GTYRAC	2 cut(s)	720, 1069
HindII	GTYRAC	2 cut(s)	720, 1069
HinfI	GANTC	4 cut(s)	130, 802, 857, 1096
HpaII	CCGG	4 cut(s)	237, 285, 683, 1100
Hpy166II	GTNNAC	4 cut(s)	539, 720, 738, 1069
Hpy188I	TCNGA	3 cut(s)	856, 1076, 1136
Hpy188III	TCNNGA	4 cut(s)	166, 256, 683, 746
Hpy8I	GTNNAC	4 cut(s)	539, 720, 738, 1069
HpyAV	CCTTC	6 cut(s)	28, 44, 232, 919, 1141, 1231
HpyCH4III	ACNGT	5 cut(s)	141, 735, 850, 880, 991
HpyCH4IV	ACGT	2 cut(s)	595, 909
HpyCH4V	TGCA	3 cut(s)	151, 539, 1180
HpyF10VI	GCNNNNNNNGC	6 cut(s)	299, 467, 758, 821, 830, 1238
HpyF3I	CTNAG	2 cut(s)	303, 853
HpySE526I	ACGT	2 cut(s)	595, 909
Hsp92II	CATG	4 cut(s)	169, 397, 443, 1013
HspAI	GCGC	2 cut(s)	269, 531
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	153, 162, 387, 893, 1037
LmnI	GCTCC	7 cut(s)	299, 458, 654, 685, 794, 961, 1076
Lsp1109I	GCAGC	4 cut(s)	473, 824, 1093, 1196
MaeI	CTAG	5 cut(s)	320, 359, 774, 1032, 1163
MaeII	ACGT	2 cut(s)	595, 909
MaeIII	GTNAC	3 cut(s)	101, 135, 943
MalI	GATC	5 cut(s)	155, 164, 389, 895, 1039
MboI	GATC	5 cut(s)	153, 162, 387, 893, 1037
MboII	GAAGA	6 cut(s)	59, 103, 337, 412, 1152, 1235
MflI	RGATCY	2 cut(s)	387, 1037
MhlI	GDGCHC	3 cut(s)	304, 541, 651
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	3 cut(s)	432, 555, 741
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	470
MroI	TCCGGA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	470
MspI	CCGG	4 cut(s)	237, 285, 683, 1100
MspR9I	CCNGG	2 cut(s)	286, 547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	6 cut(s)	299, 467, 758, 821, 830, 1238
NciI	CCSGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	5 cut(s)	153, 162, 387, 893, 1037
NlaIII	CATG	4 cut(s)	169, 397, 443, 1013
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	135, 943
NspI	RCATGY	1 cut(s)	1013
PagI	TCATGA	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	1146
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	130, 802, 1096
PkrI	GCNGC	5 cut(s)	463, 763, 814, 1108, 1186
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
PsiI	TTATAA	2 cut(s)	869, 995
Psp124BI	GAGCTC	2 cut(s)	304, 651
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	2 cut(s)	113, 418
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	387, 1037
RsaI	GTAC	5 cut(s)	143, 510, 524, 772, 1213
RsaNI	GTAC	5 cut(s)	142, 509, 523, 771, 1212
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	2 cut(s)	304, 651
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	5 cut(s)	462, 762, 813, 1107, 1185
Sau3AI	GATC	5 cut(s)	153, 162, 387, 893, 1037
Sau96I	GGNCC	2 cut(s)	113, 418
ScaI	AGTACT	3 cut(s)	143, 524, 772
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	286, 547
SduI	GDGCHC	3 cut(s)	304, 541, 651
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	1162
Sse9I	AATT	3 cut(s)	432, 555, 741
SseBI	AGGCCT	1 cut(s)	1146
SsiI	CCGC	2 cut(s)	446, 762
SspMI	CTAG	5 cut(s)	320, 359, 774, 1032, 1163
SstI	GAGCTC	2 cut(s)	304, 651
StuI	AGGCCT	1 cut(s)	1146
StyD4I	CCNGG	2 cut(s)	284, 545
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	5 cut(s)	141, 735, 850, 880, 991
TaiI	ACGT	2 cut(s)	598, 912
TaqI	TCGA	5 cut(s)	161, 273, 313, 817, 892
TasI	AATT	3 cut(s)	432, 555, 741
TatI	WGTACW	3 cut(s)	141, 522, 770
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	130, 802, 1096
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	3 cut(s)	211, 343, 738
TseFI	GTSAC	2 cut(s)	135, 943
TseI	GCWGC	4 cut(s)	461, 812, 1106, 1184
Tsp45I	GTSAC	2 cut(s)	135, 943
TspDTI	ATGAA	3 cut(s)	317, 456, 801
TspRI	CASTG	3 cut(s)	211, 343, 738
VneI	GTGCAC	1 cut(s)	537
XapI	RAATTY	1 cut(s)	555
XceI	RCATGY	1 cut(s)	1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	5 cut(s)	320, 359, 774, 1032, 1163
ZrmI	AGTACT	3 cut(s)	143, 524, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.