Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

26827146 .. 26828674

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGAAACCAAACATAGACGAATTGAATCAAATCCTTACTAGTTATCAAAACACCATCAACGATACTCTCCAGTTGTTCGAGCAAGTTCCGTCTCCGACACAAGACAAATTATATTGGAACGATGTCCTTCAGATTTCTGATCATCTCTCCAAACAAGCTACTATAGTGGGAATGCTATGGATCACTGGAGAACCTCCAAAAGCTGAAGCAATGAAGGAGACTATGGAAGCATACTTCAACGCTCTTCAAGGATTTTTGCTGCATTGTCATGGAAGCATGGTTGGTGCTGGGACTACACTCTCTTCGACCATACACGCTTCTGTGAAGCAAATTGTTGATTCCAGCTTCAGATTGTTGCAGGGTTCTGTTTCCTTATACGAGGGATCATATGAGAAAGGAAGGAAGCCCACGATTCCGCAGCTTGCAGGAGCAGTGTGGGAAGCATGTTCTAATTTAAAGAACGTGCCTGAAACAAACATCAAAGCGATTGGAAGAGCGATGGCACATGTAGCTGTTTCTATGAAGGATGTGCTTAGGGAGATGAAAGAACTGAAGCCTGCTTCTTCTTCACCTGATCATAATGTTTCGACAAACTCGGATGACGATGATTTAGGCGATGAACTGTCTCCTGAAGAATTTGAAGTTGCTAAAATGGTAGCAGATATTGTGTCTGAGACGCTCGTTGTTATAAAAGAGCTTATCCGTGCTATCACATGCATGATCAAGCTGGAGAATCCAAAGGATAATAGTGAGTTTGTGGATTCGTTTGAGAAGTTACTGAAGTTGTGTCAAGGAATTGGTGTACAGATTGATGAGCTTGGAGCTTGTGTTTACCCGCCGCAAGAGTTTGGTCTCATGAAACAAACAGTGGAGAACATGAGGGAAAGTATTGGTGAGATTGAGTCTGATGTTAAGAGTTCCAAGAATTCTTCATCAGAAGCTTTATCAGGATCATGCAGAAGGCTGCAGAGTTTGATTGAACATATGGTAACCGAGTTGGACACAAGAATCGAAGCTGAAGTAGTTTACAAAATGCAGAATGTTACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

351

Amino Acids

38.83

Weight (kDa)

4.82

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	1 - 129	3.3e-44	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	144 - 244	1.1e-30	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AciI	CCGC	3 cut(s)	419, 839, 842
AclWI	GGATC	3 cut(s)	191, 394, 961
AcsI	RAATTY	2 cut(s)	638, 928
AcuI	CTGAAG	7 cut(s)	116, 228, 334, 575, 654, 803, 1041
AfaI	GTAC	1 cut(s)	807
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	5 cut(s)	28, 241, 251, 644, 983
AhlI	ACTAGT	1 cut(s)	41
Alw26I	GTCTC	5 cut(s)	99, 215, 633, 671, 860
AlwI	GGATC	3 cut(s)	191, 394, 961
ApeKI	GCWGC	3 cut(s)	262, 421, 967
ApoI	RAATTY	2 cut(s)	638, 928
AsuHPI	GGTGA	2 cut(s)	564, 908
BbvI	GCAGC	3 cut(s)	249, 433, 954
BccI	CCATC	2 cut(s)	65, 496
BclI	TGATCA	3 cut(s)	142, 577, 723
BcoDI	GTCTC	5 cut(s)	99, 215, 633, 671, 860
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	165, 968
BisI	GCNGC	4 cut(s)	263, 422, 842, 968
BlsI	GCNGC	4 cut(s)	264, 423, 843, 969
BpmI	CTGGAG	3 cut(s)	56, 210, 752
Bpu10I	CCTNAGC	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	860
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bse1I	ACTGG	2 cut(s)	73, 193
Bse3DI	GCAATG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	535, 607
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	73, 193
BseXI	GCAGC	3 cut(s)	249, 433, 954
BseYI	CCCAGC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	307
BsmAI	GTCTC	5 cut(s)	99, 215, 633, 671, 860
BsmBI	CGTCTC	2 cut(s)	99, 671
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	860
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
BspACI	CCGC	3 cut(s)	419, 839, 842
BspCNI	CTCAG	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	972
BspPI	GGATC	3 cut(s)	191, 394, 961
BspQI	GCTCTTC	2 cut(s)	252, 490
BspTNI	GGTCTC	1 cut(s)	860
BsrDI	GCAATG	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	73, 193
BssMI	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
Bst4CI	ACNGT	2 cut(s)	627, 871
Bst6I	CTCTTC	3 cut(s)	252, 310, 490
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	426, 561
BstDEI	CTNAG	2 cut(s)	536, 675
BstEII	GGTNACC	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	535, 607
BstKTI	GATC	6 cut(s)	145, 186, 389, 580, 726, 956
BstMAI	GTCTC	5 cut(s)	99, 215, 633, 671, 860
BstMBI	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNSI	RCATGY	3 cut(s)	450, 512, 720
BstPI	GGTNACC	1 cut(s)	991
BstSFI	CTRYAG	2 cut(s)	165, 968
BstV1I	GCAGC	3 cut(s)	249, 433, 954
BtgZI	GCGATG	2 cut(s)	515, 633
BtsCI	GGATG	2 cut(s)	535, 607
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	3 cut(s)	186, 441, 876
Cac8I	GCNNGC	2 cut(s)	426, 561
CciI	TCATGA	1 cut(s)	858
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	9 cut(s)	272, 280, 447, 509, 717, 721, 859, 880, 957
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	2 cut(s)	536, 675
DpnI	GATC	6 cut(s)	144, 185, 388, 579, 725, 955
DpnII	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
DraI	TTTAAA	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	252, 310, 490
EarI	CTCTTC	3 cut(s)	252, 310, 490
Eco31I	GGTCTC	1 cut(s)	860
Eco57I	CTGAAG	7 cut(s)	116, 228, 334, 575, 654, 803, 1041
Eco91I	GGTNACC	1 cut(s)	991
EcoO65I	GGTNACC	1 cut(s)	991
EcoRI	GAATTC	1 cut(s)	928
EcoT22I	ATGCAT	1 cut(s)	722
Esp3I	CGTCTC	2 cut(s)	99, 671
FaeI	CATG	9 cut(s)	275, 283, 450, 512, 720, 724, 862, 883, 960
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	9 cut(s)	271, 279, 446, 508, 716, 720, 858, 879, 956
FauI	CCCGC	1 cut(s)	846
FauNDI	CATATG	2 cut(s)	391, 987
FbaI	TGATCA	3 cut(s)	142, 577, 723
Fnu4HI	GCNGC	4 cut(s)	263, 422, 842, 968
FokI	GGATG	2 cut(s)	542, 614
Fsp4HI	GCNGC	4 cut(s)	263, 422, 842, 968
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	4 cut(s)	263, 422, 842, 968
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	3 cut(s)	56, 210, 752
HgaI	GACGC	1 cut(s)	688
Hin1II	CATG	9 cut(s)	275, 283, 450, 512, 720, 724, 862, 883, 960
HindIII	AAGCTT	1 cut(s)	942
HinfI	GANTC	7 cut(s)	28, 341, 415, 736, 764, 905, 1011
HphI	GGTGA	2 cut(s)	564, 908
Hpy166II	GTNNAC	3 cut(s)	806, 835, 1030
Hpy188I	TCNGA	8 cut(s)	99, 135, 142, 353, 601, 676, 910, 940
Hpy188III	TCNNGA	3 cut(s)	632, 859, 951
Hpy8I	GTNNAC	3 cut(s)	806, 835, 1030
HpyAV	CCTTC	5 cut(s)	140, 211, 396, 520, 957
HpyCH4III	ACNGT	2 cut(s)	627, 871
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	7 cut(s)	265, 361, 428, 720, 960, 970, 1039
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	2 cut(s)	536, 675
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	9 cut(s)	275, 283, 450, 512, 720, 724, 862, 883, 960
Ksp22I	TGATCA	3 cut(s)	142, 577, 723
Kzo9I	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
LguI	GCTCTTC	2 cut(s)	252, 490
LmnI	GCTCC	2 cut(s)	431, 824
Lsp1109I	GCAGC	3 cut(s)	249, 433, 954
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	3 cut(s)	777, 991, 1045
MalI	GATC	6 cut(s)	144, 185, 388, 579, 725, 955
MboI	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
MboII	GAAGA	7 cut(s)	239, 297, 507, 558, 561, 647, 924
MluCI	AATT	7 cut(s)	23, 110, 333, 454, 638, 798, 928
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	2 cut(s)	122, 981
MnlI	CCTC	3 cut(s)	207, 376, 876
Mph1103I	ATGCAT	1 cut(s)	722
MseI	TTAA	2 cut(s)	458, 915
MslI	CAYNNNNRTG	2 cut(s)	270, 719
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeI	CATATG	2 cut(s)	391, 987
NdeII	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
NlaIII	CATG	9 cut(s)	275, 283, 450, 512, 720, 724, 862, 883, 960
NsiI	ATGCAT	1 cut(s)	722
NspI	RCATGY	3 cut(s)	450, 512, 720
PagI	TCATGA	1 cut(s)	858
PciI	ACATGT	1 cut(s)	508
PciSI	GCTCTTC	2 cut(s)	252, 490
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	6 cut(s)	28, 341, 415, 736, 764, 1011
PkrI	GCNGC	4 cut(s)	264, 423, 843, 969
PleI	GAGTC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	913
PscI	ACATGT	1 cut(s)	508
PsiI	TTATAA	1 cut(s)	692
PspEI	GGTNACC	1 cut(s)	991
PspFI	CCCAGC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	972
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	2 cut(s)	270, 719
SapI	GCTCTTC	2 cut(s)	252, 490
SaqAI	TTAA	2 cut(s)	458, 915
SatI	GCNGC	4 cut(s)	263, 422, 842, 968
Sau3AI	GATC	6 cut(s)	142, 183, 386, 577, 723, 953
SchI	GAGTC	1 cut(s)	914
SfcI	CTRYAG	2 cut(s)	165, 968
SmiMI	CAYNNNNRTG	2 cut(s)	270, 719
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	7 cut(s)	23, 110, 333, 454, 638, 798, 928
SsiI	CCGC	3 cut(s)	419, 839, 842
SspMI	CTAG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	627, 871
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	4 cut(s)	81, 308, 590, 1014
TasI	AATT	7 cut(s)	23, 110, 333, 454, 638, 798, 928
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	1 cut(s)	844
TfiI	GAWTC	6 cut(s)	28, 341, 415, 736, 764, 1011
Tru1I	TTAA	2 cut(s)	458, 915
Tru9I	TTAA	2 cut(s)	458, 915
TscAI	CASTG	3 cut(s)	193, 441, 876
TseI	GCWGC	3 cut(s)	262, 421, 967
TspDTI	ATGAA	6 cut(s)	230, 539, 560, 636, 875, 924
TspGWI	ACGGA	2 cut(s)	81, 695
TspRI	CASTG	3 cut(s)	193, 441, 876
XapI	RAATTY	2 cut(s)	638, 928
XceI	RCATGY	3 cut(s)	450, 512, 720
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.