Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002414

Physical Location & Seq

Genomic Coordinates Forward (+)

27792644 .. 27794543

Gene Structure 1900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTAGAGCCGAGAAAGAGCAACTGAACCGAACTCTGAGCCAGCACCTCAACACCATCCATGAGATCTTAGAGGTGTTGGATCAAAACCCACCTTCTACAGTTGAGAAGGTGAGCTGGGAAGATGTCATCCAGATGGGTAACCAAGTCTCCAAACAAGCCACCATTGTTGGAATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGATTGAAGAAAACATGACTGCCTACTTTAATATGCTACAAAGTTTTCTTCTTCTTTCGCATGGGAGTATGGTTGGTGCTGGGCCTACTCTTTCTTCTTGTGTCCACGCTTCTGTAAAGCAAGTTGTTGACTCCAGTTTCAAGTTGATGAAGGAATCTGTCTCCTTATATGGAGCAGTGAATAAAGACTGGAAATCGTCAATTCCACAGTTGGCTGGTGCAGTATGGGAAGCCTGTTCTGCTCTTAAGAAGACCCCTGCCGCAAATGTCACAGCAATTGGACGGGCAGTGACACAGGTTGCAGTCACTATGAAAGATGTTCTTCGTGAGATGAAGGAGCTTAAACCGGCTACTGACCCAACAGAAGATGAGGCTGAAGCAGAGATTGAGCCTCATGATGATGAAACTTCTAGTGACAGTGATCTGGGAAACGACTTGTCACCTGAAGAGATGAAAGTTGCTGAGCTAGCAATTGATGCCGTGTCTGAGACTCTTGTAGTGATGAAGGAACTAATTCGGACCATCACAGGTTTGCTTAAACGGGAAAATCCAAATGACAGTAGTCTTGTGGATTCTCTAGAGAAATTGTTGAAGATGTGTCAAGGAATTGGAGAACAGATAGATGAGCTTGGAGCTTGTCTCTACCCCCCACAAGAGGTTTCCACTATCAAGACAATAGTGGAAAAAATGTCCAGCCTTGCTGATGATATGAAAGCTGAACTACAGAGTCTTGGAGGAAATTTGGAAGCTTTTATTCAGGCATGTGATTGTTTGAAGAGTTCATTGAGACGGCTTGATTCTGCTGTAGACTGTCCAACGACTGTTGATTTAGAAAACAGAGTGCAGAAGATTGATTTGAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

358

Amino Acids

39.08

Weight (kDa)

4.64

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	42 - 185	3.1e-46	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	202 - 306	6e-26	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22970 AT1G22970 AT1G22970 AT1G22970 AT1G22980 AT1G22980 AT1G71150 AT1G71150
fragaria_vesca	FvH4_4g26370 FvH4_4g26370 FvH4_4g26370 FvH4_4g26380
malus_domestica	MD13G1032100.v1.1 MD14G1231700.v1.1
prunus_persica	Prupe.1G320100_v2.0.a1 Prupe.1G320200_v2.0.a1
pyrus_communis	pycom13g02810 pycom16g02930
rosa_chinensis	RchiOBHm_Chr4g0403431 RchiOBHm_Chr4g0434001 RchiOBHm_Chr4g0434011 RchiOBHm_Chr7g0223611
rosa_laevigata	RLG00000006709
rosa_multiflora	Rmu_co8474767.1_g000001 Rmu_sc0000352.1_g000023 Rmu_sc0002775.1_g000039
rosa_roxburghii	Rroxscaffold_5G00375410 Rroxscaffold_5G00375420
rosa_rugosa	Rorug04G0272600
rosa_samantha	Rh2AG359200 Rh2CG573900 Rh4AG328100 Rh4AG328300 Rh4BG335500 Rh4BG335600 Rh4CG351000 Rh4CG351100 Rh4DG332000 Rh5AG338400
rosa_wichuraiana	Rw4G028450 Rw4G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1014
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	2 cut(s)	603, 672
AfiI	CCNNNNNNNGG	1 cut(s)	862
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	5 cut(s)	215, 349, 799, 982, 1066
AluBI	AGCT	8 cut(s)	117, 203, 547, 673, 835, 842, 923, 956
AluI	AGCT	8 cut(s)	117, 203, 547, 673, 835, 842, 923, 956
Alw26I	GTCTC	5 cut(s)	154, 373, 689, 851, 988
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	946
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	2 cut(s)	290, 726
AsuHPI	GGTGA	2 cut(s)	124, 639
AsuNHI	GCTAGC	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	464
BccI	CCATC	3 cut(s)	65, 130, 737
BceAI	ACGGC	2 cut(s)	671, 1013
BcoDI	GTCTC	5 cut(s)	154, 373, 689, 851, 988
BfaI	CTAG	4 cut(s)	204, 618, 674, 785
BfmI	CTRYAG	3 cut(s)	99, 929, 1011
BfrI	CTTAAG	1 cut(s)	452
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	290, 726
BmsI	GCATC	1 cut(s)	673
BmtI	GCTAGC	1 cut(s)	677
BoxI	GACNNNNGTC	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	831, 863
BpmI	CTGGAG	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	669
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	342, 401
BseGI	GGATG	2 cut(s)	57, 129
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMII	CTCAG	3 cut(s)	29, 660, 684
BseNI	ACTGG	2 cut(s)	342, 401
BseYI	CCCAGC	2 cut(s)	117, 287
BsgI	GTGCAG	2 cut(s)	447, 1070
BshFI	GGCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmAI	GTCTC	5 cut(s)	154, 373, 689, 851, 988
BsmBI	CGTCTC	1 cut(s)	988
BsnI	GGCC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	66, 82, 628
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	3 cut(s)	30, 661, 685
BspHI	TCATGA	1 cut(s)	601
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	342, 401
BssAI	RCCGGY	1 cut(s)	553
BssMI	GATC	3 cut(s)	66, 82, 628
Bst4CI	ACNGT	6 cut(s)	103, 417, 626, 767, 1019, 1030
Bst6I	CTCTTC	2 cut(s)	648, 977
BstAFI	CTTAAG	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	2 cut(s)	44, 675
BstDEI	CTNAG	4 cut(s)	38, 70, 669, 693
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	57, 129
BstKTI	GATC	3 cut(s)	69, 85, 631
BstMAI	GTCTC	5 cut(s)	154, 373, 689, 851, 988
BstMBI	GATC	3 cut(s)	66, 82, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
BstNSI	RCATGY	1 cut(s)	972
BstPAI	GACNNNNGTC	1 cut(s)	768
BstPI	GGTNACC	1 cut(s)	140
BstSFI	CTRYAG	3 cut(s)	99, 929, 1011
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	57, 129
BtsI	GCAGTG	2 cut(s)	390, 501
BtsIMutI	CAGTG	3 cut(s)	390, 501, 631
Cac8I	GCNNGC	2 cut(s)	44, 675
CciI	TCATGA	1 cut(s)	601
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	290, 726
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	5 cut(s)	62, 223, 269, 602, 969
DdeI	CTNAG	4 cut(s)	38, 70, 669, 693
DpnI	GATC	3 cut(s)	68, 84, 630
DpnII	GATC	3 cut(s)	66, 82, 628
Eam1104I	CTCTTC	2 cut(s)	648, 977
EarI	CTCTTC	2 cut(s)	648, 977
Eco47I	GGWCC	1 cut(s)	726
Eco57I	CTGAAG	2 cut(s)	603, 672
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	988
FaeI	CATG	5 cut(s)	65, 226, 272, 605, 972
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FatI	CATG	5 cut(s)	61, 222, 268, 601, 968
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	44, 116
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	4 cut(s)	204, 618, 674, 785
GluI	GCNGC	1 cut(s)	468
GsaI	CCCAGC	2 cut(s)	121, 291
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	5 cut(s)	65, 226, 272, 605, 972
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	6 cut(s)	338, 362, 697, 779, 934, 1004
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	124, 639
Hpy166II	GTNNAC	3 cut(s)	313, 337, 1015
Hpy188I	TCNGA	3 cut(s)	39, 694, 726
Hpy188III	TCNNGA	5 cut(s)	133, 533, 602, 785, 877
Hpy8I	GTNNAC	3 cut(s)	313, 337, 1015
HpyAV	CCTTC	5 cut(s)	103, 105, 352, 535, 706
HpyCH4III	ACNGT	6 cut(s)	103, 417, 626, 767, 1019, 1030
HpyCH4V	TGCA	3 cut(s)	428, 509, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
HpyF3I	CTNAG	4 cut(s)	38, 70, 669, 693
Hsp92II	CATG	5 cut(s)	65, 226, 272, 605, 972
Kzo9I	GATC	3 cut(s)	66, 82, 628
LmnI	GCTCC	3 cut(s)	380, 544, 839
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	4 cut(s)	204, 618, 674, 785
MaeIII	GTNAC	6 cut(s)	140, 475, 496, 511, 620, 645
MalI	GATC	3 cut(s)	68, 84, 630
MboI	GATC	3 cut(s)	66, 82, 628
MfeI	CAATTG	2 cut(s)	483, 678
MflI	RGATCY	1 cut(s)	66
MluCI	AATT	8 cut(s)	408, 483, 678, 720, 791, 813, 946, 1069
MlyI	GAGTC	3 cut(s)	332, 691, 943
MmeI	TCCRAC	3 cut(s)	60, 151, 1046
MnlI	CCTC	6 cut(s)	59, 67, 571, 609, 856, 935
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	5 cut(s)	237, 453, 549, 744, 1072
MslI	CAYNNNNRTG	2 cut(s)	134, 606
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	1 cut(s)	554
MunI	CAATTG	2 cut(s)	483, 678
MwoI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
NdeII	GATC	3 cut(s)	66, 82, 628
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	5 cut(s)	65, 226, 272, 605, 972
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	5 cut(s)	475, 496, 511, 620, 645
NspI	RCATGY	1 cut(s)	972
PagI	TCATGA	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	362, 779, 1004
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	3 cut(s)	332, 691, 942
PpsI	GAGTC	3 cut(s)	332, 691, 942
PshAI	GACNNNNGTC	1 cut(s)	768
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	2 cut(s)	117, 287
PspPI	GGNCC	2 cut(s)	290, 726
PsuI	RGATCY	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	134, 606
SaqAI	TTAA	5 cut(s)	237, 453, 549, 744, 1072
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	66, 82, 628
Sau96I	GGNCC	2 cut(s)	290, 726
SchI	GAGTC	3 cut(s)	332, 691, 943
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	3 cut(s)	99, 929, 1011
SinI	GGWCC	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	134, 606
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	8 cut(s)	408, 483, 678, 720, 791, 813, 946, 1069
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	4 cut(s)	204, 618, 674, 785
TaaI	ACNGT	6 cut(s)	103, 417, 626, 767, 1019, 1030
TasI	AATT	8 cut(s)	408, 483, 678, 720, 791, 813, 946, 1069
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	362, 779, 1004
Tru1I	TTAA	5 cut(s)	237, 453, 549, 744, 1072
Tru9I	TTAA	5 cut(s)	237, 453, 549, 744, 1072
TscAI	CASTG	3 cut(s)	390, 501, 631
TseFI	GTSAC	5 cut(s)	475, 496, 511, 620, 645
Tsp45I	GTSAC	5 cut(s)	475, 496, 511, 620, 645
TspDTI	ATGAA	8 cut(s)	371, 533, 554, 624, 674, 725, 932, 978
TspRI	CASTG	3 cut(s)	390, 501, 631
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	726
XapI	RAATTY	1 cut(s)	946
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	1 cut(s)	972
XmiI	GTMKAC	1 cut(s)	1014
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	4 cut(s)	204, 618, 674, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.