Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

8295078 .. 8296941

Gene Structure 1864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGCTCTACTCGGTATCGTCTCTCCTGTGACTTTCACCGGAAAGCACCCGGTAAATTCCCGATCGCGACGGAGAACGGTAGTAAAATGCTCGAACGAACGCCGGATTCTCTTCAACCGCATTGCTCCAGTTTACGATAATTTGAATGATCTCTTAAGCTTAGGCCAGCATCGAATTTGGAAAAACATGGCTGTCTCATGGAGTGGAGCAAAAAAAGGAGATTACGTTCTTGATTTGTGTTGTGGAAGTGGTGATTTAGCGTTTCTCTTATCTGAGAAAGTTGGTTCAACTGGCAAGGTGATGGGCTTGGATTTCTCATCTGAACAACTAGCTGTTGCAGCAACTAGACAGAGTCTTAAAGCAAGGTCTTGTTACAAGTGTATAGAGTGGATTGAAGGTGATGCTATTGATTTGCCATTTGATGATTGTGAATTCGATGCGGTTACGATGGGTTATGGTCTTCGAAACGTTGTTGATAGACTTAGAGCTATGAAGGAGATGTATCGGGTTTTGAAACCAGGTTCAAGAGTATCTATACTTGATTTCAATAAGAGCAACCAATCCGTTACTACGTTTATGCAGGGCTGGATGATTGACAATGTAGTTGTCCCTGTGGCTACTGTTTATGATCTTGCAAAGGAGTATGAATATCTCAAGTATTCAATCAATGGCTATCTAACAGGAGAAGAGCTAGAGACTCTTGCTCTAGAAGCTGGCTTCTCAAGTGCCTGCCATTATGAGATAAGCGGTGGTTTCATGGGGAATTTGGTCGCTATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

261

Amino Acids

29.05

Weight (kDa)

7.54

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	37 - 255	1.8e-55	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	71 - 241	1e-09	Methyltransferase domain
Methyltransf_31	PF13847	72 - 189	4.5e-20	Methyltransferase domain
Methyltransf_25	PF13649	77 - 175	1e-19	Methyltransferase domain
Methyltransf_11	PF08241	78 - 178	6.7e-19	Methyltransferase domain
Methyltransf_12	PF08242	78 - 177	2.5e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	4 cut(s)	5, 121, 443, 750
AclI	AACGTT	1 cut(s)	471
AcsI	RAATTY	4 cut(s)	58, 177, 434, 766
AflII	CTTAAG	1 cut(s)	157
AgsI	TTSAA	8 cut(s)	118, 148, 291, 398, 517, 528, 550, 666
AjnI	CCWGG	1 cut(s)	520
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	5 cut(s)	162, 335, 491, 694, 716
AluI	AGCT	5 cut(s)	162, 335, 491, 694, 716
Alw26I	GTCTC	3 cut(s)	28, 202, 692
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	4 cut(s)	58, 177, 434, 766
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	31, 266, 313, 413
AsuII	TTCGAA	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	2 cut(s)	298, 445
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	28, 202, 692
BfaI	CTAG	4 cut(s)	332, 348, 695, 710
BfrI	CTTAAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	6, 342
BlsI	GCNGC	2 cut(s)	7, 343
Bme1390I	CCNGG	2 cut(s)	53, 522
BmrFI	CCNGG	2 cut(s)	53, 522
BmsI	GCATC	3 cut(s)	181, 394, 430
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	466
BpuEI	CTTGAG	2 cut(s)	641, 709
BpuMI	CCSGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bse1I	ACTGG	2 cut(s)	131, 298
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	131, 298
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	42, 53, 106
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	3 cut(s)	28, 202, 692
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	466
Bsp143I	GATC	3 cut(s)	65, 151, 631
Bsp68I	TCGCGA	1 cut(s)	70
BspACI	CCGC	4 cut(s)	5, 121, 443, 750
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	131, 298
BssMI	GATC	3 cut(s)	65, 151, 631
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	82, 625
Bst6I	CTCTTC	2 cut(s)	119, 684
BstAFI	CTTAAG	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	170, 718, 733
BstDEI	CTNAG	3 cut(s)	163, 276, 485
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	68, 154, 634
BstMAI	GTCTC	3 cut(s)	28, 202, 692
BstMBI	GATC	3 cut(s)	65, 151, 631
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 713
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	2 cut(s)	51, 520
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	597
BtuMI	TCGCGA	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	170, 718, 733
CsiI	ACCWGGT	1 cut(s)	520
CviAII	CATG	3 cut(s)	190, 201, 760
DdeI	CTNAG	3 cut(s)	163, 276, 485
DpnI	GATC	3 cut(s)	67, 153, 633
DpnII	GATC	3 cut(s)	65, 151, 631
Eam1104I	CTCTTC	2 cut(s)	119, 684
EarI	CTCTTC	2 cut(s)	119, 684
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	193, 204, 763
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	189, 200, 759
Fnu4HI	GCNGC	2 cut(s)	6, 342
FokI	GGATG	1 cut(s)	604
Fsp4HI	GCNGC	2 cut(s)	6, 342
FspBI	CTAG	4 cut(s)	332, 348, 695, 710
GluI	GCNGC	2 cut(s)	6, 342
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	3 cut(s)	42, 53, 106
Hin1II	CATG	3 cut(s)	193, 204, 763
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	109, 355, 700
HpaII	CCGG	3 cut(s)	42, 53, 106
HphI	GGTGA	4 cut(s)	31, 266, 313, 413
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	277, 325
Hpy188III	TCNNGA	5 cut(s)	63, 69, 233, 528, 710
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	392, 490
HpyCH4III	ACNGT	2 cut(s)	82, 625
HpyCH4IV	ACGT	3 cut(s)	228, 471, 575
HpyCH4V	TGCA	3 cut(s)	341, 583, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 713
HpyF3I	CTNAG	3 cut(s)	163, 276, 485
HpySE526I	ACGT	3 cut(s)	228, 471, 575
Hsp92II	CATG	3 cut(s)	193, 204, 763
Kzo9I	GATC	3 cut(s)	65, 151, 631
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	2 cut(s)	133, 209
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	3 cut(s)	181, 394, 430
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	4 cut(s)	332, 348, 695, 710
MaeII	ACGT	3 cut(s)	228, 471, 575
MaeIII	GTNAC	4 cut(s)	31, 374, 445, 568
MalI	GATC	3 cut(s)	67, 153, 633
MboI	GATC	3 cut(s)	65, 151, 631
MboII	GAAGA	3 cut(s)	106, 455, 701
MluCI	AATT	5 cut(s)	58, 142, 177, 434, 766
MlyI	GAGTC	2 cut(s)	364, 694
MnlI	CCTC	1 cut(s)	774
MseI	TTAA	2 cut(s)	158, 360
MspCI	CTTAAG	1 cut(s)	157
MspI	CCGG	3 cut(s)	42, 53, 106
MspR9I	CCNGG	2 cut(s)	53, 522
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	341, 713
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	65, 151, 631
NlaIII	CATG	3 cut(s)	193, 204, 763
NmuCI	GTSAC	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	7, 343
Ple19I	CGATCG	1 cut(s)	68
PleI	GAGTC	2 cut(s)	363, 694
PpsI	GAGTC	2 cut(s)	363, 694
Psp1406I	AACGTT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	354
PvuI	CGATCG	1 cut(s)	68
RruI	TCGCGA	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	158, 360
SatI	GCNGC	2 cut(s)	6, 342
Sau3AI	GATC	3 cut(s)	65, 151, 631
SchI	GAGTC	2 cut(s)	364, 694
ScrFI	CCNGG	2 cut(s)	53, 522
SexAI	ACCWGGT	1 cut(s)	520
SfaNI	GCATC	3 cut(s)	181, 394, 430
SfuI	TTCGAA	1 cut(s)	466
SmlI	CTYRAG	3 cut(s)	157, 656, 724
SmoI	CTYRAG	3 cut(s)	157, 656, 724
Sse9I	AATT	5 cut(s)	58, 142, 177, 434, 766
SsiI	CCGC	4 cut(s)	5, 121, 443, 750
SspMI	CTAG	4 cut(s)	332, 348, 695, 710
StyD4I	CCNGG	2 cut(s)	51, 520
TaaI	ACNGT	2 cut(s)	82, 625
TaiI	ACGT	3 cut(s)	231, 474, 578
TaqI	TCGA	4 cut(s)	95, 175, 438, 466
TasI	AATT	5 cut(s)	58, 142, 177, 434, 766
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	158, 360
Tru9I	TTAA	2 cut(s)	158, 360
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	509, 663, 748
TspGWI	ACGGA	2 cut(s)	88, 556
Tth111I	GACNNNGTC	1 cut(s)	354
Vha464I	CTTAAG	1 cut(s)	157
XapI	RAATTY	4 cut(s)	58, 177, 434, 766
XbaI	TCTAGA	1 cut(s)	709
XspI	CTAG	4 cut(s)	332, 348, 695, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.